genome.fa.s15336.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015336.1 Kokia drynarioides strain JFW-HI SEQ_130383, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  257659

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6017--6092	34	2.2	34	83	4	91	44	11	18	25	1.83
8260--8312	21	2.5	21	100	0	106	32	30	9	28	1.88
9923--10213	51	5.6	51	85	4	352	31	16	22	29	1.95
11338--11374	19	1.9	19	88	0	56	59	16	2	21	1.49
11605--11823	52	4.2	52	80	5	237	33	19	14	32	1.92
11558--11823	104	2.6	104	83	2	302	33	21	14	30	1.93
11757--11893	70	2.0	70	95	0	247	35	14	13	36	1.85
13126--13416	52	5.6	52	94	0	483	35	24	15	25	1.94
19257--19287	2	15.5	2	100	0	62	51	0	0	48	1.00
21761--21815	4	14.8	4	92	3	73	0	25	1	72	0.94
23256--23564	154	2.0	154	100	0	618	34	20	13	30	1.92
27701--27754	23	2.3	23	87	6	74	51	0	0	48	1.00
27703--27753	12	4.2	12	82	7	68	52	0	0	47	1.00
27787--27834	21	2.4	19	77	12	51	47	10	2	39	1.49
27844--27917	22	3.3	22	79	9	69	48	8	0	43	1.32
35013--35089	28	2.8	28	85	0	91	25	32	14	27	1.94
35170--35214	18	2.5	18	85	7	56	11	20	28	40	1.86
37466--37494	15	1.9	15	100	0	58	37	13	6	41	1.72
40669--40788	52	2.3	52	85	0	150	28	15	20	35	1.93
40740--40857	60	2.0	60	83	3	148	30	16	20	33	1.94
41526--41582	21	2.7	21	73	10	62	31	15	17	35	1.92
47843--47977	52	2.6	52	91	2	209	26	13	24	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49245--49400	24	6.2	24	73	11	123	21	27	17	33	1.95
49250--49371	52	2.3	52	90	0	190	19	26	18	36	1.94
49403--49541	52	2.7	52	82	0	170	24	27	14	33	1.94
55421--55477	20	2.8	20	86	0	69	35	26	28	10	1.89
66558--66755	98	2.0	98	97	0	369	44	18	16	20	1.87
78861--78888	14	2.0	14	100	0	56	64	0	0	35	0.94
79990--80028	19	2.1	19	85	9	53	51	5	0	43	1.24
88772--88825	21	2.6	21	82	5	65	33	22	12	31	1.92
91942--91977	18	2.0	18	94	0	63	0	25	0	75	0.81
91935--91968	14	2.4	14	95	0	59	0	20	0	79	0.73
93042--93088	20	2.4	19	76	16	51	72	0	25	2	0.96
93502--93562	28	2.2	27	83	13	72	26	0	3	70	1.02
93505--93573	17	3.8	17	78	14	59	27	0	4	68	1.09
96756--96808	2	26.0	2	92	3	88	47	1	0	50	1.12
115236--115281	23	2.0	23	83	8	58	52	13	17	17	1.75
115848--115873	7	3.7	7	100	0	52	30	15	0	53	1.42
116966--116991	13	2.0	13	100	0	52	30	0	0	69	0.89
118264--118302	6	6.5	6	87	0	51	23	30	0	46	1.53
120217--120283	27	2.4	28	83	11	84	44	0	0	55	0.99
129063--129087	12	2.1	12	100	0	50	0	16	0	84	0.63
145381--145423	13	3.4	12	80	6	50	83	4	11	0	0.78
157974--158013	20	2.1	19	85	4	53	27	7	0	65	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159817--159842	5	5.2	5	100	0	52	23	0	57	19	1.40
165161--165200	21	1.9	21	89	0	62	37	20	2	40	1.66
167334--167386	15	3.5	15	84	0	61	54	3	0	41	1.18
167717--167847	47	2.7	50	68	12	119	46	3	4	45	1.42
169923--170166	52	4.7	52	77	7	217	33	25	15	26	1.95
176581--177182	316	1.9	309	85	4	823	36	15	11	36	1.84
179568--179608	8	5.4	8	80	8	50	60	0	0	39	0.96
179565--179594	15	2.0	15	100	0	60	66	0	0	33	0.92
179565--179614	15	3.2	16	80	5	59	66	0	0	34	0.92
180837--180911	37	2.0	37	100	0	150	29	24	21	25	1.99
190143--190211	29	2.4	27	77	11	75	26	4	4	65	1.30
193941--193975	17	2.0	17	88	5	52	57	2	2	37	1.29
195160--195206	2	23.5	2	100	0	94	51	0	0	48	1.00
196887--196935	22	2.2	22	86	13	66	26	8	0	65	1.20
197393--197417	8	3.1	8	100	0	50	48	12	16	24	1.79
201349--201414	26	2.5	26	100	0	132	22	22	25	28	1.99
207415--207452	15	2.4	16	82	8	51	55	2	0	42	1.14
212802--212841	21	2.0	21	85	5	55	37	12	5	45	1.64
212862--212932	32	2.2	32	100	0	142	28	18	21	32	1.96
213634--213763	23	5.6	23	83	6	127	43	23	23	9	1.83
214586--214644	27	2.2	26	96	3	109	42	16	0	40	1.49
220388--220482	47	2.0	47	100	0	190	16	10	36	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220840--220864	13	1.9	13	100	0	50	32	0	0	68	0.90
227003--227059	29	2.0	29	83	13	73	38	3	3	54	1.35
227087--227118	14	2.4	14	90	10	50	31	0	3	65	1.08
228200--228242	15	2.9	15	83	13	61	34	0	0	65	0.93
229745--229852	11	10.4	11	69	24	67	55	3	1	38	1.28
229766--229864	17	5.5	17	75	17	85	54	3	2	40	1.27
229732--229822	20	4.4	20	69	24	64	51	6	1	40	1.35
229745--229882	37	3.8	35	76	14	127	54	3	1	40	1.27
238254--238286	14	2.4	14	85	5	50	24	18	15	42	1.88
241689--241732	3	14.3	3	90	4	70	63	0	36	0	0.95
242813--242839	5	5.4	5	100	0	54	18	62	0	18	1.32
248324--248476	23	6.6	23	75	12	125	11	23	20	43	1.85
248327--248472	71	2.1	69	84	7	188	12	24	19	43	1.86
255571--255662	23	4.0	23	79	0	103	15	20	20	43	1.88

Tables:   1

The End!