genome.fa.s15337.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015337.1 Kokia drynarioides strain JFW-HI SEQ_130384, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  210647

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286--321	18	1.9	19	88	5	56	38	2	8	50	1.47
5183--5221	21	1.9	20	84	5	51	38	7	10	43	1.67
6174--6262	30	2.9	30	80	3	106	37	13	8	40	1.76
6182--6262	31	2.7	30	78	3	99	38	13	7	40	1.73
6501--6588	29	3.0	29	78	5	86	42	12	11	34	1.79
8298--8354	21	2.7	21	86	0	69	29	21	17	31	1.96
23216--23281	31	2.1	31	91	0	105	37	9	9	43	1.68
25137--25363	116	1.9	117	88	5	341	36	13	21	28	1.91
30056--30091	13	2.8	13	95	0	63	36	2	13	47	1.58
36150--36329	95	1.9	96	82	10	226	36	14	19	29	1.91
36554--36900	29	12.0	29	73	13	236	32	4	29	34	1.77
36556--36695	60	2.3	59	82	4	163	32	4	30	33	1.77
36712--36900	59	3.2	59	85	5	224	31	4	28	35	1.76
38028--38083	11	4.8	12	82	10	55	57	1	1	39	1.20
38026--38090	6	11.0	6	77	14	64	55	1	1	41	1.18
38008--38118	17	6.4	17	82	7	134	54	2	0	42	1.21
38026--38118	35	2.7	35	88	6	127	55	3	1	39	1.23
38008--38118	52	2.1	52	86	3	152	54	2	0	42	1.21
39756--39798	22	2.0	21	81	4	50	65	4	0	30	1.13
40041--40071	14	2.3	14	94	5	55	12	0	0	87	0.55
40036--40074	15	2.7	15	84	15	55	12	2	0	84	0.72
59192--59276	29	2.9	31	79	8	97	29	8	30	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59238--59315	31	2.6	30	80	8	86	37	6	25	30	1.81
59536--59639	30	3.5	29	84	7	138	33	2	26	36	1.72
59548--59690	59	2.4	59	82	9	157	31	4	28	34	1.78
59617--59703	30	2.9	30	81	8	88	32	5	26	35	1.80
60806--60895	3	29.7	3	77	10	67	35	5	1	57	1.29
61604--61640	17	2.2	17	90	0	56	51	0	2	45	1.15
73133--73196	31	2.1	31	88	2	94	50	17	12	20	1.78
90368--90464	37	2.6	37	93	1	167	41	8	5	45	1.56
98840--98883	14	3.1	14	80	3	52	54	0	0	45	0.99
99978--100007	7	4.3	7	91	0	51	30	26	26	16	1.97
110369--110460	30	3.1	30	84	9	125	31	2	21	44	1.64
111787--111835	17	2.8	18	80	17	50	55	2	2	40	1.23
111824--111865	20	2.1	20	90	0	66	40	0	0	59	0.97
111834--111865	10	3.2	10	90	0	55	37	0	0	62	0.95
111823--111865	16	2.7	16	85	0	50	41	0	0	58	0.98
116749--116787	6	6.5	6	100	0	78	33	0	51	15	1.44
130665--130725	31	2.0	31	93	0	104	27	11	18	42	1.84
136609--136634	8	3.2	8	100	0	52	88	0	0	11	0.52
141755--141796	9	4.3	10	82	11	52	33	0	2	64	1.07
141754--141796	19	2.3	19	88	8	61	34	0	2	62	1.08
143005--143050	18	2.6	18	77	16	51	52	0	2	45	1.13
143593--143619	7	3.9	7	100	0	54	14	0	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150633--150675	19	2.3	19	83	0	50	44	2	0	53	1.13
156174--156227	27	2.0	27	82	7	65	38	16	18	25	1.92
156715--156749	10	3.4	10	84	7	52	17	0	25	57	1.40
157380--157404	4	6.2	4	100	0	50	24	0	24	52	1.48
187677--187716	21	2.0	21	90	5	64	27	7	42	22	1.80
190257--190293	3	12.3	3	94	0	65	32	2	0	64	1.07
191211--191264	26	2.1	26	100	0	108	22	11	31	35	1.89
197835--198079	52	4.7	52	84	5	287	27	15	25	31	1.96
197835--198079	105	2.3	104	85	3	314	27	15	25	31	1.96
202217--202272	11	4.9	11	78	6	58	42	1	1	53	1.21
202183--202287	6	18.2	6	69	16	71	45	0	1	51	1.18
202183--202279	17	5.6	17	80	2	113	44	1	2	52	1.19
202183--202287	34	3.0	34	86	5	131	45	0	1	51	1.18
202995--203047	27	1.9	28	84	3	72	47	0	0	52	1.00
204098--204479	29	13.0	29	68	12	199	32	31	4	31	1.78
204107--204480	58	6.4	59	87	4	542	32	31	4	31	1.79
204103--204480	118	3.2	116	87	5	546	32	31	4	31	1.79
208117--208144	14	2.0	14	100	0	56	35	7	14	42	1.73

Tables:   1

The End!