genome.fa.s15338.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015338.1 Kokia drynarioides strain JFW-HI SEQ_130385, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115558

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595--783	98	1.9	100	86	4	276	32	31	6	30	1.82
688--863	59	3.0	59	82	5	205	32	28	6	32	1.82
690--873	30	6.2	29	73	10	133	32	29	5	32	1.82
6309--6351	3	14.7	3	85	4	61	30	2	2	65	1.18
11385--11449	30	2.1	31	82	2	78	44	0	3	52	1.16
13294--13330	16	2.3	16	90	0	56	18	0	2	78	0.87
13340--13367	7	4.0	7	100	0	56	42	14	0	42	1.45
21343--21378	18	2.0	18	100	0	72	50	11	5	33	1.61
22134--22175	18	2.3	18	91	0	66	59	0	4	35	1.19
22142--22180	18	2.2	18	86	4	53	53	2	2	41	1.28
22834--22875	21	2.0	21	86	9	59	35	0	0	64	0.94
22854--22902	24	2.0	25	84	4	64	46	0	4	48	1.20
23391--23429	18	2.1	19	85	4	53	38	0	0	61	0.96
24579--24634	20	2.8	19	76	15	51	32	0	7	60	1.24
25108--25151	18	2.3	19	85	14	56	31	6	2	59	1.36
30120--30165	24	1.9	24	86	8	67	56	2	0	41	1.11
31228--31351	57	2.1	59	82	4	153	43	3	1	51	1.27
31335--31390	28	2.0	27	82	3	67	44	7	0	48	1.30
31474--31513	16	2.5	16	83	0	53	35	20	2	42	1.65
35613--35652	21	1.9	21	84	0	53	40	0	2	57	1.12
36047--36101	22	2.5	20	75	16	56	49	9	1	40	1.45
44918--44973	22	2.6	23	78	18	59	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45782--45807	3	8.7	3	100	0	52	0	34	0	65	0.93
53122--53189	9	7.6	9	69	0	55	22	32	44	1	1.62
53125--53196	18	4.0	18	87	0	99	23	33	40	2	1.69
53122--53195	36	2.1	36	89	0	112	21	32	43	2	1.67
53170--53261	39	2.4	39	83	0	103	16	35	40	7	1.77
55762--56389	333	1.9	330	82	4	780	26	18	16	38	1.92
56688--56725	16	2.3	17	90	4	60	60	0	0	39	0.97
61349--61486	31	4.5	31	70	8	113	47	10	15	27	1.77
64548--64572	3	8.3	3	100	0	50	64	0	0	36	0.94
65629--65670	21	2.0	22	86	13	61	76	2	2	19	1.01
66439--66480	2	21.0	2	90	0	66	45	0	4	50	1.23
72777--72827	23	2.2	24	82	10	61	37	0	3	58	1.16
84831--84917	42	2.1	42	80	8	97	58	9	4	27	1.49
86629--86685	28	2.0	28	100	0	114	33	28	7	31	1.84
87052--87099	25	1.9	25	87	8	71	25	12	6	56	1.59
92137--92619	29	16.4	29	78	7	438	34	28	2	33	1.72
92137--92641	59	8.6	58	81	7	445	34	28	2	33	1.71
106999--107307	29	10.4	28	80	8	222	37	29	2	30	1.72
107036--107307	30	9.2	30	82	7	306	37	30	2	29	1.69
106998--107307	59	5.2	58	82	7	286	37	29	2	30	1.72
107559--107740	96	1.9	96	81	4	224	31	17	13	38	1.88
108804--108848	23	2.0	23	86	8	65	48	4	2	44	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110297--110352	7	8.4	7	81	16	57	48	14	0	37	1.44
110289--110349	21	3.0	21	83	11	74	44	14	0	40	1.46
110322--110355	13	2.7	13	90	4	52	44	17	0	38	1.49

Tables:   1

The End!