genome.fa.s15339.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015339.1 Kokia drynarioides strain JFW-HI SEQ_130386, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  229081

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233--257	12	2.1	12	100	0	50	28	16	16	40	1.89
959--1023	4	16.0	4	79	9	69	0	33	0	66	0.92
959--1024	13	4.6	15	75	20	70	0	34	0	65	0.93
964--1021	29	2.1	27	87	6	80	0	34	0	65	0.93
14346--14483	69	2.0	69	98	0	267	45	10	11	32	1.74
16907--16970	30	2.1	33	83	13	84	32	3	12	51	1.55
17674--17703	3	10.0	3	92	0	51	33	36	0	30	1.58
18663--18700	6	6.3	6	100	0	76	34	18	31	15	1.92
24157--24196	3	13.7	3	89	5	64	35	2	0	62	1.09
24157--24194	20	1.9	20	94	0	67	34	2	0	63	1.09
24150--24206	23	2.7	20	70	15	51	33	8	0	57	1.29
26220--26266	23	2.0	25	83	8	62	36	0	8	55	1.31
27535--27601	18	3.6	19	76	9	75	58	2	1	37	1.23
28211--28474	130	2.0	129	94	0	465	50	14	6	29	1.68
35680--35751	36	2.0	36	88	0	108	56	9	9	23	1.61
36903--36954	24	2.3	23	81	18	65	42	0	11	46	1.40
38759--38825	29	2.3	29	94	0	125	52	10	4	32	1.56
42739--42799	31	2.0	31	87	6	88	45	9	9	34	1.70
45063--45123	29	2.2	28	78	16	67	49	1	3	45	1.28
45300--45326	2	13.5	2	100	0	54	51	0	0	48	1.00
48592--48621	16	1.9	15	93	6	51	36	0	3	60	1.14
51305--51335	9	3.4	9	95	0	53	48	19	6	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52784--52823	17	2.4	17	100	0	80	57	0	0	42	0.98
53052--53089	18	2.1	18	85	9	51	23	5	0	71	1.07
63094--63179	4	21.2	4	74	11	68	2	33	0	63	1.07
63104--63180	20	3.8	20	84	10	93	1	35	0	63	1.03
63094--63179	17	5.3	17	77	13	83	2	33	0	63	1.07
64884--64923	17	2.4	17	87	4	55	57	0	2	40	1.12
68809--68851	16	2.7	15	79	10	50	55	2	0	41	1.12
73313--73356	13	3.4	13	74	0	52	13	29	31	25	1.94
73307--73371	26	2.5	26	92	0	103	18	24	27	29	1.98
73829--73870	11	4.0	11	81	12	52	50	0	2	47	1.14
73925--73966	11	4.0	11	81	12	52	47	2	0	50	1.14
78393--78441	16	3.0	16	78	21	57	55	2	0	42	1.11
83361--83385	10	2.5	10	100	0	50	8	0	0	92	0.40
83745--83790	22	2.0	23	87	4	67	28	2	4	65	1.23
90145--90195	21	2.4	21	79	20	61	64	1	0	33	1.05
90150--90196	24	2.0	22	88	8	67	61	2	0	36	1.08
92402--92443	16	2.5	17	80	3	50	54	0	4	40	1.21
93818--93917	50	2.0	50	100	0	200	38	18	12	32	1.87
94905--94936	2	16.0	2	100	0	64	50	0	0	50	1.00
95278--95399	44	2.8	42	76	9	118	50	9	8	32	1.64
97046--97097	25	2.0	26	81	3	61	53	5	1	38	1.36
97722--97764	16	2.6	17	85	10	54	53	0	6	39	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97722--97764	17	2.7	16	82	7	52	53	0	6	39	1.28
97770--97845	25	3.0	24	71	17	66	53	2	2	40	1.28
97777--97851	27	3.0	24	72	24	66	54	1	2	41	1.23
97828--97908	31	2.7	31	80	12	91	56	1	3	38	1.25
98591--98631	18	2.4	17	91	4	64	36	0	0	63	0.95
101813--102104	146	2.0	146	93	0	494	50	7	4	37	1.51
102194--102220	12	2.2	12	100	0	54	33	0	0	66	0.92
103104--103152	25	1.9	26	91	4	82	63	6	2	28	1.30
103275--103409	21	6.9	19	68	24	61	71	16	2	10	1.24
103277--103379	12	8.9	12	75	10	90	71	16	1	9	1.21
103263--103402	44	3.1	44	78	5	111	70	17	2	10	1.24
103276--103384	56	1.9	57	86	1	157	71	16	1	10	1.21
112586--112657	35	2.1	35	94	0	126	48	6	13	30	1.69
116926--116958	6	5.5	6	92	0	57	12	36	30	21	1.90
119089--119129	13	2.9	15	79	20	52	58	0	0	41	0.98
119674--119714	14	2.8	15	82	13	50	43	7	0	48	1.30
121168--121206	1	39.0	1	84	0	51	92	0	7	0	0.39
121168--121206	9	4.4	9	96	3	71	92	0	7	0	0.39
125751--125819	31	2.2	31	84	5	86	23	15	23	37	1.93
125837--125947	59	1.9	59	88	5	172	36	17	24	21	1.94
137191--137378	98	1.9	97	82	5	236	36	15	18	29	1.91
137639--138007	59	6.2	60	80	7	357	41	2	24	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137634--138020	29	13.1	29	70	15	179	40	2	25	31	1.69
137666--138007	117	2.9	118	83	5	399	41	2	23	31	1.70
137634--138007	30	12.7	30	68	17	178	40	2	25	31	1.69
139809--139872	17	3.9	17	71	22	55	51	4	1	42	1.32
139802--139873	32	2.2	34	87	9	105	51	4	1	43	1.29
139813--139873	15	3.8	16	77	16	63	52	4	1	40	1.33
140484--140674	98	1.9	98	86	0	265	14	25	23	36	1.93
140484--140682	49	4.1	49	70	6	125	14	24	24	36	1.93
140759--140942	49	3.8	49	79	11	182	13	24	21	40	1.89
140688--140892	99	2.1	100	81	7	249	15	24	20	40	1.91
145159--145197	19	2.1	18	85	4	51	35	0	25	38	1.56
148082--148165	29	2.8	29	72	15	82	33	22	2	41	1.67
150421--150457	16	2.4	16	86	8	51	45	0	32	21	1.52
151254--151285	11	3.0	11	95	4	57	18	28	15	37	1.92
154292--154344	18	2.9	18	85	2	61	52	5	3	37	1.43
154308--154344	19	2.0	18	89	5	56	56	2	2	37	1.28
154894--154924	14	2.1	15	94	5	55	51	0	12	35	1.40
156945--156982	3	12.7	3	94	0	67	31	2	0	65	1.06
167985--168425	194	2.3	193	82	6	509	26	18	27	26	1.98
177609--177691	31	2.7	31	76	14	84	55	9	7	27	1.58
178137--178208	30	2.4	31	81	6	85	50	16	11	22	1.77
179659--179724	30	2.2	30	91	0	105	25	10	24	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180982--181020	20	2.0	20	84	0	51	48	25	7	17	1.74
182534--182576	21	2.0	22	86	4	61	55	2	4	37	1.33
192952--192981	12	2.6	11	90	10	51	80	0	0	20	0.72
225725--225792	17	4.1	17	75	3	68	42	0	35	22	1.54
228097--228130	16	2.1	17	88	5	52	14	20	5	58	1.57

Tables:   1

The End!