Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001534.1 Kokia drynarioides strain JFW-HI SEQ_113104, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17604
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34

Warning! 167 characters in sequence are not A, C, G, or T


Found at i:6141 original size:27 final size:24

Alignment explanation


    Indices: 6079--6153  Score: 132
    Period size: 24  Copynumber: 3.1  Consensus size: 24

       6069 TACTGCTGGA

                 *                  
       6079 ATGCCTCCCAACAACATGGGAGGG
          1 ATGCCACCCAACAACATGGGAGGG

                                    
       6103 ATGCCACCCAACAACATGGGAGGG
          1 ATGCCACCCAACAACATGGGAGGG

                                 *  
       6127 ATGCCACCCAACAACATGGGAAGG
          1 ATGCCACCCAACAACATGGGAGGG

               
       6151 ATG
          1 ATG

       6154 ACTCCGAATC


Statistics
Matches: 49,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   49  1.00

ACGTcount: A:0.33, C:0.28, G:0.28, T:0.11


Consensus pattern (24 bp):   
ATGCCACCCAACAACATGGGAGGG
Done.