genome.fa.s15341.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015341.1 Kokia drynarioides strain JFW-HI SEQ_130388, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  327941

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28--69	22	1.9	22	85	0	57	35	0	4	59	1.19
73--138	31	2.1	31	86	5	89	46	1	0	51	1.10
373--421	25	2.0	25	87	0	71	38	2	10	48	1.48
3490--3572	24	3.5	24	81	0	94	51	9	10	27	1.68
7508--7558	23	2.2	24	82	10	61	27	25	0	47	1.53
9704--9737	14	2.4	14	95	0	59	23	8	14	52	1.69
9722--9902	96	1.9	96	84	6	242	36	14	20	28	1.92
10169--10478	30	10.5	29	76	15	264	31	3	30	34	1.75
10156--10478	59	5.5	59	85	4	366	32	3	29	34	1.75
12240--12319	15	5.3	15	73	0	79	21	15	21	42	1.88
12248--12320	30	2.4	30	86	4	103	20	16	21	41	1.90
15981--16033	11	4.8	11	77	9	54	64	7	0	28	1.21
16728--16761	17	1.9	18	88	5	52	50	2	2	44	1.32
20145--20475	174	1.9	171	82	5	407	31	15	29	22	1.95
40037--40072	19	1.9	19	88	5	56	58	0	5	36	1.22
40295--40323	2	15.0	2	92	7	51	51	0	0	48	1.00
42235--42259	7	3.6	7	100	0	50	48	0	24	28	1.52
43557--43748	62	3.0	64	83	8	248	40	11	15	32	1.83
53032--53075	21	2.1	21	91	4	72	18	2	9	70	1.24
53631--53701	18	3.8	17	76	16	61	66	2	1	29	1.15
66563--66603	21	2.0	21	90	0	64	29	7	39	24	1.82
74531--74563	12	2.7	12	95	4	57	60	3	0	36	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79273--79315	2	21.5	2	90	0	68	44	0	55	0	0.99
79273--79315	14	3.1	14	96	0	77	44	0	55	0	0.99
82573--82644	35	2.1	35	94	0	126	23	25	19	31	1.98
83536--83575	12	3.4	12	79	6	55	42	0	0	57	0.98
84357--84405	6	8.2	6	86	6	64	51	0	48	0	1.00
84357--84405	18	2.7	18	90	0	71	51	0	48	0	1.00
84453--84496	22	2.0	23	86	13	65	52	0	0	47	1.00
97087--97128	18	2.4	19	80	15	54	45	0	4	50	1.23
97090--97144	19	2.9	18	79	12	58	38	1	5	54	1.34
106527--106695	84	2.0	84	100	0	338	30	15	15	39	1.88
106940--106980	20	2.0	20	100	0	82	29	24	21	24	1.99
107203--107250	21	2.2	23	92	7	82	54	2	0	43	1.12
107619--107667	20	2.4	21	90	6	75	61	18	0	20	1.35
108225--108334	57	1.9	57	88	3	168	23	12	12	50	1.74
108225--108349	57	2.2	56	84	5	162	24	13	11	51	1.73
109667--109709	22	2.0	21	81	9	50	58	16	2	23	1.50
112513--112542	15	2.0	15	93	0	51	23	0	0	76	0.78
115466--115504	19	2.1	19	100	0	78	33	25	20	20	1.97
118045--118085	20	2.0	20	86	9	57	65	14	12	7	1.45
121108--121146	19	2.1	19	85	0	51	38	15	15	30	1.88
121639--121710	25	2.8	25	95	2	126	40	19	29	11	1.86
121639--121815	23	7.4	23	82	8	146	42	20	24	11	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123583--123622	11	3.5	11	86	3	53	70	0	0	30	0.88
124402--124466	30	2.2	30	85	0	85	43	0	9	47	1.35
127579--127657	31	2.5	33	82	10	94	25	15	11	48	1.78
127521--127657	31	4.5	31	72	16	88	23	18	13	45	1.84
127519--127712	91	2.1	90	81	2	219	23	17	13	45	1.84
127919--128011	48	1.9	49	84	2	125	50	8	15	25	1.72
128521--128577	27	2.1	27	100	0	114	47	8	7	36	1.62
137611--137688	25	3.1	25	100	0	156	38	7	7	46	1.61
147711--147796	42	2.0	42	100	0	172	29	18	13	38	1.90
149508--149540	16	2.1	16	94	0	57	39	21	6	33	1.78
156329--156412	28	2.8	31	82	8	86	50	0	2	47	1.14
156353--156409	28	2.0	28	89	6	87	47	0	1	50	1.11
157247--157279	6	5.8	6	86	13	52	48	0	33	18	1.48
157248--157279	11	2.9	11	100	0	64	46	0	34	18	1.49
159825--159866	21	2.0	22	86	13	61	57	19	14	9	1.64
160371--160423	28	2.0	26	82	14	63	39	1	1	56	1.21
161502--161540	21	1.9	21	94	5	71	23	10	10	56	1.63
168240--168281	22	1.9	22	85	9	59	21	35	2	40	1.66
184899--185037	70	2.0	72	85	2	192	34	4	6	54	1.46
187297--187321	13	1.9	13	100	0	50	64	4	24	8	1.38
195256--195282	5	5.4	5	100	0	54	81	0	0	18	0.69
198575--198607	17	1.9	17	88	11	50	33	0	3	63	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199364--199411	22	2.2	22	84	0	60	16	6	12	64	1.46
199376--199418	11	3.9	11	81	0	50	18	4	11	65	1.42
202873--202968	44	2.2	45	88	3	142	33	9	20	36	1.85
209666--209690	4	6.2	4	100	0	50	48	0	0	52	1.00
213550--213574	2	12.5	2	100	0	50	52	0	0	48	1.00
215189--215215	13	2.1	13	100	0	54	29	14	7	48	1.71
232447--232528	41	2.0	41	100	0	164	31	4	17	46	1.69
242104--242134	6	5.2	6	100	0	62	16	19	32	32	1.94
263306--263330	7	3.6	7	100	0	50	52	0	0	48	1.00
269862--269886	3	8.3	3	100	0	50	64	0	0	36	0.94
271056--271098	18	2.5	17	79	20	54	58	0	0	41	0.98
275392--275444	16	3.4	16	79	10	74	24	5	0	69	1.09
275384--275446	30	2.1	30	100	0	126	25	7	0	66	1.18
280603--280628	2	13.0	2	100	0	52	50	0	0	50	1.00
286049--286149	34	3.0	34	89	1	141	36	8	13	40	1.76
287395--287730	24	13.4	24	85	10	383	21	33	16	28	1.95
287376--287446	19	3.5	19	77	17	70	23	32	14	29	1.94
287414--287707	29	10.3	29	73	17	172	20	34	17	28	1.95
287493--287537	19	2.4	19	88	0	63	24	35	15	24	1.94
287395--287739	53	6.8	52	77	10	331	22	33	16	27	1.95
287742--288147	216	1.9	212	93	2	704	43	18	9	27	1.82
289764--289808	23	1.9	24	86	4	65	17	4	6	71	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300166--300209	23	1.9	23	90	0	70	22	2	15	59	1.48
300204--300306	31	3.4	31	77	5	86	35	7	11	44	1.70
300684--300709	2	13.0	2	100	0	52	50	0	0	50	1.00
301125--301206	35	2.3	36	77	8	98	51	0	6	42	1.26
309528--309579	16	3.4	16	78	10	72	17	26	5	50	1.69
309540--309585	15	3.1	15	75	12	58	21	26	6	45	1.76
309528--309585	30	1.9	30	100	0	116	20	25	6	46	1.75
314014--314046	8	4.1	8	100	0	66	24	51	0	24	1.48
320614--320647	5	6.8	5	89	0	50	2	20	0	76	0.92
322772--322835	30	2.1	30	85	0	83	39	14	3	43	1.61
322801--322891	31	2.9	32	81	4	96	39	20	4	35	1.73
322782--322941	30	5.3	29	76	13	135	36	21	5	36	1.75
326046--326114	33	2.1	33	84	10	88	63	1	7	27	1.29
326207--326234	14	2.0	14	100	0	56	71	0	14	14	1.15

Tables:   1

The End!