genome.fa.s15343.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015343.1 Kokia drynarioides strain JFW-HI SEQ_130390, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  430638

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214--281	23	3.0	23	86	2	102	48	19	20	11	1.80
282--331	23	2.2	23	92	0	82	40	24	22	14	1.90
394--441	24	1.9	26	84	16	66	31	22	0	45	1.53
2522--2555	11	3.2	10	88	12	50	32	2	0	64	1.08
11466--11500	2	17.5	2	100	0	70	0	48	0	51	1.00
14671--14814	72	2.0	72	98	0	279	29	13	13	43	1.83
29965--30304	180	1.9	180	82	2	423	40	10	12	37	1.77
30998--31068	23	3.1	22	81	4	79	39	26	18	15	1.90
33183--33210	6	4.7	6	100	0	56	17	32	0	50	1.47
54508--54574	28	2.5	25	79	13	64	29	7	0	62	1.22
62018--62061	16	3.0	15	80	12	56	45	0	0	54	0.99
62020--62085	29	2.2	30	84	10	82	43	1	0	54	1.09
62076--62117	13	2.9	14	80	13	50	52	0	2	45	1.13
62081--62110	15	1.9	16	93	6	53	56	0	3	40	1.16
62413--62459	18	2.6	18	83	10	60	51	2	4	42	1.33
62460--62506	20	2.4	19	89	7	67	36	0	2	61	1.08
62612--62650	19	2.0	20	85	14	55	35	0	2	61	1.10
74533--74584	18	2.9	18	73	18	54	21	3	3	71	1.18
77718--77782	33	2.0	32	93	3	112	33	12	16	36	1.87
77728--77783	17	3.4	17	69	20	55	33	12	14	39	1.83
101122--101176	27	2.0	27	100	0	110	43	14	7	34	1.73
105423--105455	3	11.0	3	100	0	66	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107388--107427	14	2.9	14	88	0	53	72	0	27	0	0.85
107384--107430	18	2.7	18	86	3	60	72	0	27	0	0.85
107392--107444	14	3.7	14	82	2	52	64	0	35	0	0.94
110248--110301	26	2.0	27	85	3	74	35	7	3	53	1.47
110432--110513	7	11.7	7	74	14	53	21	3	25	48	1.66
110733--110776	21	2.1	21	87	8	63	27	13	34	25	1.93
110771--110906	45	3.0	45	92	0	218	20	19	27	31	1.97
112695--112961	133	2.0	133	97	0	498	46	10	7	35	1.67
112990--113039	16	3.2	16	71	21	52	32	2	8	58	1.39
113749--113793	21	2.2	21	92	4	74	60	11	0	28	1.31
113886--113929	23	1.9	23	85	0	61	72	9	0	18	1.10
114159--114195	4	9.5	4	88	5	58	0	21	0	78	0.75
116298--116335	17	2.2	19	86	13	55	52	10	0	36	1.36
116543--116577	2	18.5	2	88	11	56	51	0	0	48	1.00
119048--119102	16	3.2	16	73	14	56	29	3	7	60	1.41
127918--127945	2	14.0	2	100	0	56	50	0	0	50	1.00
134275--134301	14	1.9	14	100	0	54	92	0	7	0	0.38
148806--148832	2	13.5	2	100	0	54	48	51	0	0	1.00
152470--152496	14	1.9	14	100	0	54	0	25	0	74	0.83
154125--154159	18	1.9	18	88	11	54	57	0	0	42	0.99
154123--154159	12	3.0	12	88	7	56	56	0	0	43	0.99
154123--154182	26	2.4	25	82	2	66	61	1	1	35	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161463--161505	2	21.5	2	100	0	86	51	0	0	48	1.00
168338--168390	18	3.3	18	66	33	57	47	5	11	35	1.63
168336--168394	29	2.0	29	100	0	118	47	6	10	35	1.64
189666--189706	21	2.0	21	90	0	64	21	56	4	17	1.60
199746--199776	3	10.3	3	100	0	62	32	0	32	35	1.58
201092--201135	18	2.4	18	100	0	88	38	27	13	20	1.90
213623--213663	21	2.0	20	85	4	55	34	14	12	39	1.84
213755--213780	4	6.5	4	100	0	52	76	0	23	0	0.78
245699--245756	30	1.9	30	82	6	73	53	10	0	36	1.35
245771--245819	22	2.2	22	82	10	55	48	6	4	40	1.47
251069--251095	8	3.4	8	100	0	54	44	0	0	55	0.99
257598--257698	50	2.0	50	90	0	157	21	27	15	34	1.94
277633--279195	859	1.8	847	81	7	1942	29	17	17	35	1.93
287883--288000	46	2.6	46	95	0	209	27	15	15	41	1.87
289308--289338	16	1.9	16	93	0	53	35	12	3	48	1.58
294478--294512	13	2.6	14	86	9	54	40	2	14	42	1.60
294658--294746	23	3.9	23	84	7	110	13	19	24	42	1.87
294658--294747	46	2.0	46	90	0	144	13	18	24	43	1.86
295662--295713	26	2.0	26	88	0	77	28	17	5	48	1.70
297265--297315	24	2.1	24	88	0	75	23	11	9	54	1.66
299109--299247	23	6.3	23	75	12	132	12	23	20	43	1.85
307537--307737	100	2.0	100	99	0	393	38	12	16	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330145--330178	17	1.9	17	88	5	50	70	8	14	5	1.31
330145--330193	18	2.8	17	78	9	53	65	6	20	8	1.41
347917--347967	25	2.0	25	96	0	93	23	9	15	50	1.73
349500--349537	19	2.0	20	84	5	51	52	2	5	39	1.38
375509--375574	25	2.6	25	80	4	80	28	3	1	66	1.15
384645--384674	8	3.8	8	100	0	60	13	0	0	86	0.57
391212--391358	58	2.5	57	81	9	190	29	14	19	37	1.91
404031--404118	23	3.8	23	87	3	70	11	25	23	39	1.88
404040--404118	23	3.4	24	89	3	110	11	24	24	40	1.87
407239--407318	23	3.2	26	63	23	64	42	10	5	42	1.60
412040--412096	20	2.9	19	80	12	55	49	1	1	47	1.22
414451--414480	13	2.3	13	94	0	51	53	23	6	16	1.66
414901--414953	26	2.1	25	85	3	70	47	5	1	45	1.37
415593--415636	19	2.3	19	80	4	52	65	2	2	29	1.16
418367--418403	16	2.3	16	90	0	56	48	5	13	32	1.65
418599--418638	17	2.4	16	84	8	53	52	17	5	25	1.64
429423--429502	23	3.5	22	87	3	106	36	27	22	13	1.92
429420--429567	23	6.5	22	79	3	98	41	22	22	12	1.88
429645--429674	10	3.0	10	95	0	51	26	23	0	50	1.50

Tables:   1

The End!