genome.fa.s15346.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015346.1 Kokia drynarioides strain JFW-HI SEQ_130393, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  273082

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274--319	25	1.9	23	86	8	65	39	4	2	54	1.32
1357--1422	21	3.1	21	84	0	78	43	15	3	37	1.62
2364--2440	17	4.5	17	80	6	84	41	1	5	51	1.32
4117--4579	117	3.9	117	86	4	644	33	32	3	30	1.76
4117--4579	176	2.6	176	86	3	671	33	32	3	30	1.76
4117--4579	59	7.9	58	89	3	626	33	32	3	30	1.76
6051--6192	29	4.8	29	80	13	137	33	4	26	35	1.78
6051--6183	59	2.3	59	83	7	155	34	5	25	34	1.79
14887--14936	20	2.5	20	81	15	59	46	0	4	50	1.20
23753--23777	3	8.3	3	100	0	50	64	0	36	0	0.94
24227--24287	24	2.9	19	68	23	50	31	0	6	62	1.21
27149--27216	35	1.9	35	85	5	93	22	13	14	50	1.77
27370--27503	61	2.3	58	82	7	146	52	16	10	20	1.73
36314--36376	31	2.0	31	90	6	101	55	12	7	23	1.63
54810--54919	30	3.7	30	69	20	79	39	1	0	58	1.15
54881--54931	24	2.3	22	78	21	54	41	3	0	54	1.19
55725--55854	60	2.2	60	97	0	242	13	23	26	36	1.91
65669--65706	20	1.9	20	89	10	60	31	10	2	55	1.48
67726--67798	26	2.8	26	89	0	101	31	28	21	17	1.97
75769--75799	10	3.1	10	90	0	53	87	0	12	0	0.55
76307--76395	41	2.2	41	97	0	169	50	4	1	43	1.29
85752--85786	18	1.9	18	88	0	52	20	14	8	57	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90738--90803	31	2.1	30	81	8	78	48	15	6	30	1.69
93296--93366	28	2.6	28	82	8	76	49	1	4	45	1.30
98693--98733	22	1.9	21	90	5	64	7	34	24	34	1.83
106775--106813	14	2.7	15	80	8	53	56	10	7	25	1.59
107193--107239	23	2.0	25	87	8	71	53	6	4	36	1.46
107304--107364	13	4.6	13	74	11	61	57	9	0	32	1.32
107296--107352	27	2.1	27	100	0	114	56	7	0	36	1.27
108291--108349	21	2.6	22	84	7	66	6	15	3	74	1.16
108291--108358	24	3.0	23	81	10	68	5	14	2	76	1.09
109318--109367	8	6.1	8	74	21	50	24	2	2	72	1.06
109325--109377	18	2.8	18	81	13	63	22	3	1	71	1.12
109325--109380	19	3.0	18	77	15	60	25	3	1	69	1.14
119491--119550	21	2.9	21	82	9	61	33	10	6	50	1.62
132060--132271	110	1.9	111	89	0	327	42	17	19	20	1.89
132184--132372	95	2.0	94	84	4	247	46	14	16	22	1.83
135167--135223	17	3.4	17	72	0	60	28	26	24	21	1.99
136269--137061	381	2.2	357	82	8	920	33	10	16	39	1.83
144243--144287	7	6.4	7	81	0	54	17	11	35	35	1.86
148718--148764	23	2.0	23	83	4	58	36	4	4	55	1.39
150724--150838	57	2.0	57	98	0	221	33	3	12	50	1.57
163714--163747	16	2.1	16	100	0	68	29	14	20	35	1.93
163865--163923	23	2.6	23	97	2	111	28	15	11	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175371--175515	75	1.9	75	95	0	263	17	15	31	35	1.91
180008--180065	27	2.1	28	83	3	73	48	10	1	39	1.48
186961--187001	21	2.0	20	85	4	55	43	0	0	56	0.99
194059--194097	14	2.7	15	84	11	55	17	5	15	61	1.51
201592--201650	31	1.9	31	89	0	91	27	13	15	44	1.84
201674--201814	59	2.4	59	79	3	149	42	13	18	25	1.87
207854--207896	22	2.0	22	81	9	52	11	13	11	62	1.54
218499--218549	15	3.4	15	75	24	54	41	0	0	58	0.98
218501--218561	30	2.2	29	83	16	76	42	0	0	57	0.98
224292--224334	21	2.0	21	95	0	77	41	6	23	27	1.80
227512--227542	16	1.9	16	93	0	53	70	0	0	29	0.87
230156--230198	16	2.8	16	82	3	52	58	25	2	13	1.48
236451--236506	29	1.9	29	96	0	103	44	3	12	39	1.60
239164--239197	15	2.3	15	90	10	52	26	17	0	55	1.42
247724--247754	6	5.2	6	100	0	62	16	0	0	83	0.64
248021--248077	29	2.0	29	89	6	89	47	10	0	42	1.38
248029--248084	29	1.9	29	88	0	85	51	8	0	39	1.33
258444--258474	15	2.1	15	100	0	62	67	19	0	12	1.22
261035--261097	21	3.0	21	95	0	117	23	23	17	34	1.96
261499--261653	51	3.2	51	65	20	130	34	7	6	50	1.57
261453--261728	96	3.0	96	89	6	416	37	7	5	48	1.56
262547--262610	31	2.1	31	87	0	92	37	9	9	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266070--266124	28	1.9	29	96	3	103	54	12	1	30	1.48
266181--266276	41	2.3	41	94	0	165	36	27	6	30	1.81
266265--266304	17	2.4	17	86	0	53	42	25	17	15	1.88
269789--269815	13	2.1	13	100	0	54	14	22	22	40	1.90
269873--269921	11	4.5	11	79	2	55	26	10	2	61	1.39

Tables:   1

The End!