genome.fa.s15348.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015348.1 Kokia drynarioides strain JFW-HI SEQ_130395, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119902

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1157--1233	23	3.4	22	83	7	75	10	25	24	38	1.87
1224--1301	23	3.5	22	82	3	75	16	23	25	34	1.95
22136--22173	17	2.2	18	85	4	51	26	2	0	71	1.00
24408--24450	21	2.0	22	86	4	61	39	2	9	48	1.48
24414--24469	22	2.6	21	80	8	58	42	0	10	46	1.38
28258--28628	30	12.1	30	81	7	332	29	23	21	25	1.99
28258--28595	63	5.5	61	82	5	333	30	23	20	26	1.98
28305--28461	15	10.3	15	74	4	134	29	22	20	28	1.98
28274--28628	93	3.8	93	83	4	414	29	23	20	26	1.99
28551--28596	15	3.0	16	68	12	51	32	21	19	26	1.97
36465--36493	5	5.8	5	100	0	58	41	20	17	20	1.90
47990--48047	24	2.5	23	91	2	89	39	15	13	31	1.86
49492--49550	12	5.2	12	74	15	54	71	18	1	8	1.20
49482--49550	21	3.2	21	76	15	61	68	20	1	10	1.27
70148--70180	13	2.5	13	100	0	66	39	18	6	36	1.75
73194--73232	19	2.0	19	85	5	51	33	5	5	56	1.43
75298--75346	6	8.5	6	91	8	84	51	16	0	32	1.45
75646--75694	22	2.1	24	85	7	66	24	4	12	59	1.50
77363--77395	16	2.0	17	88	5	50	54	15	9	21	1.68
82294--82346	26	2.0	26	85	10	72	45	0	1	52	1.11
84875--84951	33	2.3	33	82	4	84	29	22	18	29	1.97
84942--85026	30	2.8	30	87	0	116	28	24	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84942--85041	30	3.3	30	84	2	112	30	23	20	27	1.98
86363--86392	12	2.4	13	94	5	53	46	0	53	0	1.00
86511--86544	17	2.0	17	88	0	50	38	8	8	44	1.67
86570--86596	14	1.9	14	100	0	54	37	14	18	29	1.91
89140--89206	34	2.0	34	87	0	98	37	11	4	46	1.61
93476--93534	29	2.0	29	83	0	73	15	28	1	54	1.51
93845--93922	6	13.5	6	72	12	65	41	1	3	53	1.27
93812--93938	35	3.6	34	82	3	137	43	0	3	52	1.22
93812--93938	17	7.3	17	82	4	137	43	0	3	52	1.22
93949--93983	19	1.9	17	88	11	52	57	5	11	25	1.56
94711--94748	19	1.9	21	89	10	62	52	0	0	47	1.00
94716--94759	20	2.2	20	84	11	56	56	2	0	40	1.11
95059--95441	29	12.9	30	78	9	365	35	29	3	31	1.75
95059--95441	59	6.4	59	81	7	461	35	29	3	31	1.75
96728--96775	25	2.0	24	83	4	60	31	2	4	62	1.26
97532--97611	12	7.1	12	75	11	71	70	18	2	8	1.25
97519--97584	31	2.1	31	85	0	87	68	18	3	10	1.32
97649--97726	25	3.1	26	78	9	81	69	12	14	3	1.33
97649--97739	25	3.7	25	75	7	80	68	16	12	3	1.34
113345--113390	18	2.5	19	79	13	51	36	2	0	60	1.09
114057--114089	9	3.7	9	95	0	57	51	3	0	45	1.16
115313--115397	6	14.3	6	71	9	50	38	2	5	52	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115345--115399	17	3.2	17	80	7	67	45	0	5	49	1.25
116087--116165	3	25.7	3	70	5	50	56	5	5	32	1.43
116254--116328	6	13.2	6	70	20	54	45	0	1	53	1.08
116257--116335	11	7.6	11	70	22	64	43	0	1	55	1.07
116258--116321	17	3.5	17	76	15	65	42	0	1	56	1.09
116256--116335	38	2.2	34	84	8	97	43	0	1	55	1.08
116283--116335	17	3.1	17	75	0	61	45	0	0	54	0.99
118074--118596	29	17.8	29	76	12	473	35	28	2	32	1.72
118074--118508	59	7.4	59	86	3	545	36	28	2	33	1.70
118344--118630	58	4.9	57	79	11	189	35	28	2	33	1.71

Tables:   1

The End!