genome.fa.s15349.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015349.1 Kokia drynarioides strain JFW-HI SEQ_130396, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  220987

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4132--4201	25	2.8	24	87	8	88	11	20	11	57	1.64
5432--5522	17	5.3	17	72	12	60	41	3	4	50	1.38
5489--5526	18	2.2	18	90	4	60	47	0	0	52	1.00
5629--5674	18	2.5	18	86	13	67	47	39	4	8	1.54
5629--5674	19	2.5	19	89	10	69	47	39	4	8	1.54
7324--7582	29	9.0	28	78	9	256	35	25	1	37	1.66
7319--7683	59	6.3	57	82	12	390	35	25	2	36	1.70
7319--7683	58	6.3	58	83	11	371	35	25	2	36	1.70
7323--7741	29	14.5	28	72	14	228	35	25	3	36	1.72
19628--19900	49	5.6	48	72	10	196	38	20	25	15	1.91
19613--19901	98	2.9	98	87	1	391	38	20	25	15	1.92
20357--20418	27	2.3	27	88	0	88	35	1	6	56	1.35
20402--20436	18	1.9	18	100	0	70	42	0	0	57	0.99
20405--20442	18	2.2	18	90	4	60	50	0	0	50	1.00
21216--21255	3	13.3	3	89	10	64	67	0	0	32	0.91
21208--21251	9	4.7	10	86	8	58	65	0	0	34	0.93
21208--21255	22	2.3	22	86	13	66	66	0	0	33	0.92
22314--22635	29	10.9	30	75	14	269	34	23	1	40	1.64
22314--22635	59	5.5	58	81	12	372	34	23	1	40	1.64
22314--22635	30	10.9	28	75	13	258	34	23	1	40	1.64
22613--22800	59	3.2	57	74	12	141	36	23	4	34	1.76
33848--33884	18	2.1	18	100	0	74	43	8	21	27	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38677--38748	29	2.5	29	95	0	126	31	18	2	47	1.63
40073--40106	17	1.9	18	88	5	52	41	23	2	32	1.69
42659--42712	29	1.9	28	81	7	65	51	0	3	44	1.19
45719--45752	15	2.1	16	89	10	52	50	0	0	50	1.00
51208--51242	18	1.9	18	94	0	61	57	5	31	5	1.46
55330--55493	28	5.8	28	79	5	152	42	9	20	26	1.83
55467--55519	27	2.0	27	84	0	70	45	7	15	32	1.74
64763--64827	3	21.7	3	75	17	55	1	30	1	66	1.10
73342--73442	23	4.4	23	80	0	94	13	21	19	44	1.86
75158--75195	18	2.2	18	85	4	51	15	31	5	47	1.68
77269--77518	128	1.9	129	80	5	283	42	14	20	22	1.88
79189--79315	63	2.0	63	96	0	236	51	8	16	22	1.71
79394--79442	25	2.0	25	92	4	82	36	26	22	14	1.92
82605--82658	9	5.9	9	85	12	74	12	3	0	83	0.78
82605--82649	5	9.4	5	81	18	60	13	2	0	84	0.72
92260--92306	20	2.3	21	85	7	62	51	6	0	42	1.27
95322--95367	5	9.2	5	90	0	74	0	58	2	39	1.10
99366--99495	61	2.1	61	98	0	251	39	25	10	24	1.88
100034--100060	2	13.5	2	100	0	54	51	0	0	48	1.00
105444--105581	23	6.0	23	79	10	147	11	23	23	42	1.86
105510--105607	25	4.0	24	83	12	119	13	28	20	37	1.90
105459--105606	48	3.1	47	82	7	158	12	26	20	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109442--109569	24	5.3	24	88	0	184	45	10	32	10	1.74
112530--112606	28	2.7	28	78	11	84	55	1	5	37	1.30
116091--116842	375	2.0	375	99	0	1495	30	21	16	31	1.95
117042--117626	302	1.9	298	90	1	936	34	13	21	30	1.92
147823--147866	21	2.1	21	100	0	88	18	11	29	40	1.85
152132--152162	3	10.3	3	100	0	62	32	0	35	32	1.58
160361--160432	29	2.4	29	86	4	90	23	12	15	48	1.79
171305--171345	19	2.2	19	86	8	57	56	0	0	43	0.99
171317--171355	17	2.3	17	81	0	51	53	0	0	46	1.00
187298--187324	2	13.5	2	100	0	54	48	0	0	51	1.00
190300--190341	21	2.0	21	90	0	66	14	7	21	57	1.61
190301--190357	21	2.7	21	83	5	62	17	10	15	56	1.67
191582--191638	23	2.5	23	100	0	114	49	3	3	43	1.36
191572--191638	23	2.9	23	93	0	98	52	2	2	41	1.32
198481--198514	3	11.3	3	100	0	68	32	0	0	67	0.91
209026--209057	16	2.0	16	100	0	64	43	0	12	43	1.42
210197--210289	34	2.7	35	80	8	111	41	2	3	52	1.29
210197--210289	17	5.5	17	78	8	100	41	2	3	52	1.29
212070--212677	29	20.8	29	71	13	288	34	25	3	36	1.73
212058--212678	59	10.6	58	79	10	477	34	25	3	36	1.73
212134--212688	29	19.0	29	72	16	339	34	26	4	35	1.76

Tables:   1

The End!