genome.fa.s15351.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015351.1 Kokia drynarioides strain JFW-HI SEQ_130398, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  277395

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4880--4923	22	2.0	23	90	4	72	61	0	34	4	1.16
4930--5174	123	2.0	122	95	0	445	35	12	20	31	1.90
13062--13100	5	7.8	5	97	0	51	30	0	48	20	1.50
13062--13103	15	2.8	15	85	0	57	28	0	52	19	1.46
13702--13727	1	26.0	1	100	0	52	0	0	0	100	0.00
15491--15527	2	18.5	2	94	0	65	45	0	54	0	1.00
20675--20820	71	2.1	71	90	0	229	36	20	19	22	1.95
21630--21673	23	1.9	23	85	0	61	43	4	2	50	1.35
21662--21719	25	2.3	25	79	8	64	63	1	0	34	1.04
21679--21725	25	1.9	24	91	4	76	68	0	0	31	0.90
21797--21833	15	2.4	16	86	8	51	62	2	0	35	1.10
21791--21833	17	2.5	18	82	17	56	62	2	0	34	1.08
21791--21864	9	8.7	9	72	8	57	59	6	0	33	1.24
22430--22479	21	2.4	21	80	3	57	54	4	4	38	1.38
23709--24309	226	2.6	225	81	7	669	33	11	11	43	1.76
28341--28428	44	2.0	44	97	0	167	54	5	11	28	1.58
30233--30262	10	3.1	10	90	9	53	70	0	0	30	0.88
43324--43355	10	3.2	10	95	0	55	6	59	34	0	1.23
43327--43358	15	2.1	15	94	0	55	9	62	28	0	1.26
44072--44117	24	1.9	24	95	0	83	28	30	0	41	1.56
44257--44281	5	5.0	5	100	0	50	0	80	0	20	0.72
44555--44601	19	2.5	19	82	0	58	40	0	6	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44540--44592	19	2.5	21	76	17	56	37	0	3	58	1.16
45277--45319	22	1.9	23	85	4	61	18	0	6	74	1.04
46425--46452	6	4.7	6	100	0	56	0	0	64	35	0.94
49539--49594	28	2.0	29	82	10	71	39	1	14	44	1.55
49554--49622	27	2.4	27	80	20	70	44	1	7	46	1.40
60584--60666	33	2.4	34	84	6	123	54	0	14	31	1.41
62750--62820	26	2.7	26	72	10	81	42	4	4	49	1.41
70477--70582	53	2.0	53	98	0	203	16	16	26	40	1.89
73242--73271	2	15.0	2	100	0	60	0	50	0	50	1.00
73787--73845	29	2.0	30	83	3	75	50	13	5	30	1.63
81792--81837	23	2.0	23	91	0	74	54	6	4	34	1.46
86275--86368	47	2.0	48	81	10	113	28	1	11	58	1.40
86487--86542	29	2.0	29	82	10	71	41	10	3	44	1.56
87447--87486	11	3.4	12	87	12	57	67	0	0	32	0.91
101583--101607	3	8.3	3	100	0	50	32	36	0	32	1.58
102609--102657	24	2.0	24	96	0	89	53	10	12	24	1.69
104142--104323	90	2.0	91	97	1	348	29	9	7	53	1.60
105208--105270	31	2.1	30	81	3	72	63	6	3	26	1.34
108552--108588	19	1.9	19	89	10	58	54	2	0	43	1.14
108715--108784	30	2.3	29	76	11	70	47	2	5	44	1.41
132586--132612	12	2.2	12	100	0	54	0	40	0	59	0.98
132590--132619	15	2.0	15	100	0	60	0	40	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141177--141214	15	2.4	17	86	8	53	60	0	5	34	1.19
150104--150177	30	2.4	29	79	14	78	51	2	1	44	1.24
153082--153236	77	2.0	78	97	1	294	30	3	33	32	1.74
160830--160922	22	4.2	21	72	8	78	61	1	1	36	1.10
161438--161505	3	23.0	3	75	19	63	33	1	2	61	1.20
161406--161505	53	1.9	51	84	11	132	32	1	5	62	1.24
162671--162765	40	2.4	39	87	6	131	58	23	5	12	1.54
166962--167367	202	2.0	203	98	0	787	23	12	20	43	1.86
168628--168680	21	2.5	20	82	11	63	71	3	1	22	1.12
169936--169976	21	1.9	22	90	5	66	29	0	17	53	1.44
170364--170433	35	2.0	35	97	0	131	27	15	22	34	1.95
182347--182410	25	2.6	25	94	0	110	42	14	25	18	1.88
182373--182526	48	3.2	46	83	10	168	42	21	23	12	1.86
182398--182526	23	5.4	23	88	5	170	43	23	22	10	1.84
182372--182526	25	6.4	25	84	10	182	42	21	23	12	1.87
185934--185964	15	2.1	15	100	0	62	54	6	12	25	1.62
187250--187300	26	2.0	26	84	0	66	33	13	3	49	1.61
187895--187953	30	2.0	30	96	0	109	33	23	10	32	1.88
189364--189395	16	2.0	16	100	0	64	56	0	6	37	1.25
192190--192373	91	2.0	91	100	0	368	42	13	20	23	1.87
194788--194822	14	2.5	14	95	0	61	45	0	17	37	1.48
195283--195324	17	2.5	17	76	3	50	42	0	2	54	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196783--196841	23	2.5	24	88	5	84	18	11	1	67	1.30
206564--206622	29	2.0	29	96	0	109	25	6	30	37	1.82
214623--214667	24	1.9	24	90	4	74	26	0	6	66	1.16
214630--214660	14	2.1	15	94	5	55	25	0	6	67	1.14
214623--214668	23	2.0	23	87	8	67	28	0	6	65	1.17
220025--220064	19	2.1	19	85	0	53	20	12	17	50	1.78
221961--222115	28	5.6	27	78	9	107	36	12	20	30	1.90
221978--222084	55	1.9	56	84	5	146	35	13	21	29	1.91
222262--222323	27	2.3	27	82	0	70	41	9	24	24	1.84
227897--228176	148	1.9	148	79	5	316	41	16	14	27	1.87
232762--232822	31	2.0	31	90	0	95	13	0	34	52	1.40
238449--238516	35	2.1	32	83	10	84	33	20	32	13	1.91
239285--239368	41	2.1	40	86	2	114	17	3	11	66	1.37
239341--239366	12	2.2	12	100	0	52	23	0	7	69	1.14
239716--239751	2	18.0	2	94	0	63	50	47	0	2	1.15
239872--239906	18	1.9	18	100	0	70	68	0	5	25	1.11
240912--240949	20	1.9	20	94	0	67	47	23	15	13	1.81
248590--248665	18	4.2	18	86	0	98	40	21	19	18	1.91
248590--248665	36	2.1	36	90	0	116	40	21	19	18	1.91
250460--250499	21	2.0	21	90	5	64	45	15	15	25	1.84
250857--250931	18	4.3	18	72	6	73	6	16	0	77	0.97
250890--250932	9	4.9	9	85	2	52	0	16	0	83	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250847--250915	34	2.0	34	97	0	129	15	18	0	65	1.28
252526--252558	17	2.0	17	88	5	50	0	30	6	63	1.18
261865--261906	17	2.6	16	82	14	50	78	0	19	2	0.86
261865--261906	11	3.8	11	75	12	50	78	0	19	2	0.86
270986--271024	21	1.9	21	89	5	62	41	15	17	25	1.89
274752--274790	19	2.1	19	85	0	51	35	2	2	58	1.25

Tables:   1

The End!