genome.fa.s15358.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015358.1 Kokia drynarioides strain JFW-HI SEQ_130405, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  211375

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3004--3046	11	3.8	11	80	17	52	65	0	2	32	1.06
3417--3447	3	10.0	3	93	6	53	32	0	0	67	0.91
4123--4211	20	4.3	20	67	22	51	62	4	3	29	1.31
4295--4493	108	1.8	109	92	3	339	30	12	13	44	1.80
4295--4517	108	2.1	108	88	3	333	30	13	14	41	1.83
4833--4887	27	2.1	26	86	10	76	27	3	5	63	1.33
17703--17737	17	2.0	18	94	5	63	65	0	0	34	0.93
30197--30263	6	11.7	6	70	9	50	44	2	2	49	1.32
30196--30260	17	3.8	17	83	4	78	44	3	3	49	1.33
30196--30260	34	1.9	34	87	0	94	44	3	3	49	1.33
32043--32166	29	4.2	29	79	11	144	35	29	4	31	1.76
32043--32170	59	2.2	59	85	2	186	35	28	3	32	1.76
32043--32282	59	4.1	57	77	8	170	33	28	5	32	1.79
32288--32347	27	2.2	27	87	0	84	31	25	15	28	1.95
45591--45821	123	1.9	122	92	0	390	21	22	18	38	1.94
45770--46080	114	2.7	114	89	1	462	22	23	19	34	1.97
46003--46182	95	1.9	95	86	2	254	22	26	18	32	1.97
46541--47170	99	6.4	99	75	8	534	20	27	15	36	1.93
46803--47211	50	8.4	48	66	10	161	19	28	15	36	1.93
46556--47167	196	3.1	196	80	4	563	19	27	15	37	1.93
47131--47225	47	2.0	47	97	0	181	17	27	16	37	1.92
47684--47798	42	2.7	42	81	5	117	19	25	13	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47859--48484	99	6.4	99	77	6	493	20	27	16	35	1.94
47866--48314	197	2.3	196	82	5	519	21	28	15	34	1.94
48196--48332	50	2.8	50	71	13	129	20	29	16	33	1.94
49402--49452	6	8.2	6	75	16	50	1	15	1	80	0.89
54360--54427	37	1.9	33	88	11	100	55	4	13	26	1.56
54372--54453	37	2.2	38	80	12	89	54	2	13	29	1.51
55565--55595	2	15.5	2	100	0	62	51	0	0	48	1.00
71243--71307	32	2.0	32	81	0	76	30	1	12	55	1.46
78230--78290	32	1.9	32	89	0	95	39	4	11	44	1.62
85927--85954	2	14.0	2	100	0	56	50	0	0	50	1.00
88500--88524	2	12.5	2	100	0	50	48	0	0	52	1.00
101067--101106	21	1.9	21	94	0	71	50	20	15	15	1.79
101109--101154	21	2.2	21	84	0	56	39	19	17	23	1.92
101100--101147	14	3.4	14	85	8	71	39	20	18	20	1.92
105834--105867	17	2.0	17	94	0	59	29	32	23	14	1.94
107125--107166	21	2.0	21	81	13	50	47	11	2	38	1.53
108285--108317	3	11.0	3	100	0	66	33	0	0	66	0.92
109630--109674	19	2.4	19	88	3	65	48	4	0	46	1.22
110011--110049	14	2.8	13	85	14	51	64	0	0	35	0.94
115076--115100	8	3.1	8	100	0	50	48	0	12	40	1.40
117001--117050	19	2.5	20	78	9	59	20	2	4	74	1.08
122414--122452	14	2.8	14	81	11	53	71	5	2	20	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122579--122963	30	13.2	29	73	13	188	36	1	24	37	1.64
122674--122956	29	9.8	28	75	11	105	37	1	23	37	1.64
122646--122861	58	3.8	56	78	7	195	35	1	25	37	1.65
124284--124331	20	2.4	20	96	0	87	12	20	12	54	1.70
124585--124626	17	2.5	17	96	0	75	59	2	0	38	1.10
125926--125962	19	1.9	19	100	0	74	27	24	16	32	1.96
127938--127981	14	3.1	14	83	3	52	59	2	0	38	1.10
132157--132201	7	6.0	7	84	10	54	2	20	0	77	0.87
132942--132990	24	2.0	24	88	0	71	24	30	20	24	1.98
133634--133686	6	8.8	6	100	0	106	50	15	0	33	1.44
136161--136222	20	3.3	18	73	15	54	59	0	1	38	1.07
136159--136230	19	3.8	19	69	9	58	61	0	1	37	1.05
136161--136238	20	4.1	18	69	14	50	61	1	1	35	1.12
136290--136357	20	3.4	20	74	11	68	57	8	0	33	1.30
136282--136357	40	1.9	40	83	5	100	57	9	1	31	1.38
136273--136390	20	5.8	20	70	17	55	58	6	0	33	1.30
136375--136426	27	2.0	27	85	11	72	65	0	5	28	1.16
137170--137214	20	2.2	20	84	7	56	26	0	8	64	1.23
137140--137235	30	3.3	29	72	15	72	30	0	6	63	1.19
137128--137225	49	2.0	47	83	11	119	30	0	8	61	1.25
137204--137242	20	1.9	20	89	5	60	30	0	7	61	1.24
137264--137325	29	2.1	29	88	11	92	29	6	3	61	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144883--144955	37	2.0	36	97	0	128	28	6	5	57	1.47
155472--155498	2	13.5	2	100	0	54	51	0	0	48	1.00
157623--157657	6	5.8	6	96	0	61	34	45	0	20	1.51
157738--157781	6	7.3	6	89	0	70	52	2	29	15	1.55
162263--162300	17	2.2	18	86	9	53	34	0	0	65	0.93
162257--162312	24	2.3	24	78	9	60	41	0	0	58	0.98
162285--162369	30	2.6	32	81	10	84	44	0	3	51	1.18
165195--165239	22	2.0	22	100	0	90	40	8	15	35	1.79
165529--165557	3	9.7	3	100	0	58	0	34	0	65	0.93
171253--171287	17	2.1	17	88	0	52	51	2	0	45	1.16
171657--171699	7	6.0	7	82	15	52	60	0	0	39	0.97
171649--171697	14	3.4	14	81	10	55	65	0	0	34	0.93
171901--174536	368	7.2	368	96	0	4844	38	19	16	25	1.92
174716--174771	22	2.6	22	91	2	87	35	1	0	62	1.06
175545--175696	30	5.1	30	79	4	155	37	25	1	34	1.68
175568--175682	60	1.9	61	87	5	171	36	26	1	35	1.67
180931--180968	8	4.9	8	80	6	51	28	0	0	71	0.87
184273--184340	34	2.0	34	97	0	127	57	8	0	33	1.30
186675--186718	18	2.5	17	82	10	52	15	2	4	77	1.04
202624--202657	15	2.2	16	89	5	52	67	0	0	32	0.91
203493--203561	34	2.0	34	100	0	138	27	14	8	49	1.73
206900--207411	260	1.9	265	85	5	698	54	11	3	30	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208198--208261	22	2.8	23	73	7	58	20	1	10	67	1.30

Tables:   1

The End!