genome.fa.s15361.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015361.1 Kokia drynarioides strain JFW-HI SEQ_130408, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183492

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13138--13171	17	1.9	18	88	5	52	29	17	14	38	1.90
22256--22294	20	1.9	20	84	5	51	35	0	2	61	1.10
22897--22975	40	2.0	39	92	2	131	35	29	8	26	1.87
29967--30010	23	1.9	23	85	0	61	54	0	6	38	1.27
30520--30565	23	2.0	23	83	4	58	21	8	13	56	1.63
31814--31847	3	11.0	3	93	6	59	2	32	0	64	1.08
33606--33631	6	4.3	6	100	0	52	84	0	0	15	0.62
39115--39157	19	2.3	19	84	8	52	60	2	6	30	1.35
40399--40445	22	2.1	22	84	7	60	68	2	0	29	1.02
41935--41977	22	2.0	22	85	0	59	44	2	0	53	1.13
44716--44966	106	2.5	100	81	5	297	26	14	21	37	1.92
44990--45300	100	3.1	98	81	6	358	26	16	18	38	1.92
45282--45308	4	6.8	4	100	0	54	25	22	25	25	2.00
50681--51255	192	3.0	192	95	0	1055	34	21	14	30	1.93
53900--54683	195	4.1	187	75	15	589	47	14	11	26	1.78
64157--64309	75	2.0	75	100	0	306	35	10	14	39	1.80
78961--79040	39	2.1	39	97	0	151	41	13	25	20	1.88
80900--80936	6	6.2	6	93	0	56	32	43	18	5	1.73
85109--85262	77	2.0	77	98	0	299	34	10	18	36	1.85
92171--92352	90	2.0	90	100	0	364	30	16	18	35	1.93
93759--93792	17	2.0	17	94	0	59	26	8	5	58	1.51
94686--94746	13	4.5	13	76	8	50	36	13	4	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93287--96518	938	3.5	917	87	5	4226	36	13	14	35	1.85
109105--109286	98	1.8	100	85	2	260	33	10	23	32	1.88
110140--110183	18	2.4	19	81	14	56	47	9	11	31	1.71
110612--110781	59	2.9	57	82	9	200	25	15	12	45	1.82
111010--111073	31	2.0	32	82	8	78	51	10	12	25	1.72
113001--113221	111	2.0	110	85	0	298	34	12	19	33	1.90
113782--113818	19	1.9	19	88	0	56	45	5	16	32	1.70
113970--114016	19	2.5	19	92	0	76	34	12	6	46	1.67
114215--114310	51	2.0	49	82	13	119	37	7	19	35	1.80
120305--120339	3	11.7	3	100	0	70	31	0	0	68	0.90
120448--120489	19	2.1	21	86	8	61	42	0	2	54	1.13
135167--135208	21	2.0	21	85	0	57	35	0	0	64	0.94
142991--143023	14	2.2	16	89	10	52	45	0	3	51	1.16
144970--145353	204	1.9	209	84	6	523	36	17	18	27	1.93
150576--150864	72	3.8	72	85	10	371	41	6	5	46	1.51
150515--150864	84	4.4	77	85	10	433	41	7	5	46	1.54
150515--150864	162	2.2	158	83	10	432	41	7	5	46	1.54
150870--151069	59	3.3	60	82	6	228	37	13	17	31	1.89
150945--151216	147	1.8	148	83	3	361	36	14	15	33	1.88
150992--151159	88	1.9	89	91	1	275	39	11	13	35	1.81
151077--151234	59	2.6	59	80	5	192	37	13	17	31	1.88
151157--151366	105	2.0	104	98	0	402	31	14	18	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154938--154991	20	2.7	20	82	0	63	64	0	0	35	0.94
155029--155077	6	8.0	6	82	13	55	55	0	0	44	0.99
164922--164979	6	9.7	6	98	0	80	6	15	60	17	1.56
164922--164979	18	3.2	18	92	0	89	6	15	60	17	1.56
180326--180352	13	2.1	13	100	0	54	48	22	0	29	1.51
180642--180695	27	2.0	27	100	0	108	40	18	11	29	1.85
181409--181446	18	2.1	19	85	5	51	50	15	2	31	1.58
181388--181515	65	2.0	65	92	1	211	53	14	5	27	1.62

Tables:   1

The End!