Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015362.1 Kokia drynarioides strain JFW-HI SEQ_130409, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8549
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.34

Warning! 450 characters in sequence are not A, C, G, or T


Found at i:5207 original size:21 final size:20

Alignment explanation


    Indices: 5183--5234  Score: 54
    Period size: 19  Copynumber: 2.6  Consensus size: 20

       5173 TCATTTTAAA

                                 
       5183 TTTATAATTTAAGCTAAGAAT
          1 TTTATAATTTAAG-TAAGAAT

                     *  *        
       5204 TTTATAA--CACTGTAAGAAT
          1 TTTATAATTTA-AGTAAGAAT

                        
       5223 TTTATAATTTAA
          1 TTTATAATTTAA

       5235 ATATCATTAT


Statistics
Matches: 24,  Mismatches: 4, Indels: 7
        0.69            0.11        0.20

Matches are distributed among these distances:
  19   15  0.62
  20    1  0.04
  21    8  0.33

ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44


Consensus pattern (20 bp):   
TTTATAATTTAAGTAAGAAT

Found at i:7031 original size:21 final size:21

Alignment explanation


    Indices: 7006--7046  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       6996 TGCCAATTCA

                                 
       7006 CACACCAAGCAATTCTGTAAT
          1 CACACCAAGCAATTCTGTAAT

                                
       7027 CACACCAAGCAATTCTGTAA
          1 CACACCAAGCAATTCTGTAA

       7047 CTTCCACATG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.39, C:0.29, G:0.10, T:0.22


Consensus pattern (21 bp):   
CACACCAAGCAATTCTGTAAT
Done.