genome.fa.s15364.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015364.1 Kokia drynarioides strain JFW-HI SEQ_130411, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142054

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3273--3338	34	2.0	34	93	3	116	21	21	4	53	1.64
14722--15108	125	3.1	126	83	3	478	27	10	26	35	1.89
16665--16690	3	8.7	3	100	0	52	30	0	34	34	1.58
22365--22409	12	3.8	12	84	0	63	68	20	2	8	1.27
22450--22484	18	1.9	18	88	0	52	77	17	0	5	0.96
22434--22523	28	3.2	28	81	10	103	71	18	3	6	1.23
22733--22765	14	2.3	15	84	10	50	24	0	0	75	0.80
22739--22766	14	2.0	14	100	0	56	28	0	0	71	0.86
25930--26005	38	2.0	38	100	0	152	36	10	15	36	1.82
28003--28273	132	2.1	132	88	4	406	24	21	27	27	1.99
39895--39996	31	3.3	31	76	2	107	48	10	7	33	1.67
39895--40016	62	2.0	62	82	6	149	47	11	8	32	1.69
41240--41295	23	2.3	26	79	14	66	33	3	0	62	1.12
43118--43169	24	2.2	24	82	3	70	28	9	3	57	1.48
43412--43457	20	2.3	20	85	7	58	28	0	6	65	1.17
46353--46389	19	1.9	20	94	5	67	24	0	2	72	0.97
48636--48729	47	2.0	47	100	0	188	38	21	12	27	1.90
51914--52053	48	2.8	48	82	4	163	27	25	16	30	1.96
57426--57462	16	2.2	18	85	9	51	78	2	8	10	1.06
61718--61785	34	2.0	34	85	5	93	39	16	2	41	1.63
72263--72530	107	2.5	106	80	4	261	34	14	16	34	1.89
74377--74507	65	2.0	65	98	0	253	35	18	18	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87850--87903	24	2.2	24	90	0	81	22	11	29	37	1.89
93612--93777	29	5.7	30	77	7	155	37	21	5	36	1.76
102444--102522	32	2.5	32	95	0	140	34	7	29	29	1.85
115592--115655	32	2.0	32	96	0	119	28	17	15	39	1.90
115784--115877	21	4.7	21	74	20	76	60	4	4	30	1.35
115759--115857	36	2.8	34	78	13	92	64	3	3	29	1.23
115831--115900	31	2.3	30	78	7	77	60	5	4	30	1.39
118273--118323	24	2.1	24	88	0	75	23	9	9	56	1.61
123129--123184	28	2.0	29	83	16	73	26	3	1	67	1.16
123226--123273	21	2.3	20	79	10	51	25	4	0	70	1.04
123226--123274	22	2.3	20	80	13	53	24	4	0	71	1.03
124000--124166	89	1.9	90	80	13	202	62	6	3	27	1.37
124310--124353	10	4.4	10	80	11	54	34	2	4	59	1.30
124310--124353	20	2.2	21	84	12	65	34	2	4	59	1.30
124328--124402	30	2.5	28	79	14	71	29	2	1	66	1.13
124360--124419	27	2.4	24	76	17	59	25	1	0	73	0.93
126591--126641	24	2.1	24	88	0	75	23	9	9	56	1.61
128524--128556	12	2.6	13	90	4	50	45	0	3	51	1.16
128645--128678	17	1.9	18	88	5	52	41	5	0	52	1.25
132827--132913	28	3.1	28	96	0	156	31	21	16	31	1.95
136065--136127	7	9.3	7	78	13	69	41	26	15	15	1.88
136063--136124	20	3.0	20	88	2	97	45	25	14	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136065--136127	27	2.3	27	83	5	74	41	26	15	15	1.88
139359--139392	17	1.9	18	88	5	52	41	5	0	52	1.25
139360--139450	45	2.0	44	89	2	137	40	8	0	50	1.33
139374--139447	25	3.2	25	65	31	63	40	9	0	50	1.35

Tables:   1

The End!