Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015365.1 Kokia drynarioides strain JFW-HI SEQ_130412, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 483592
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 525 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:351880 original size:6 final size:6
Alignment explanation
Indices: 351851--351882 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
351841 CGGAGGTGGA
*
351851 GCCGGA GCCGGT GCCGGT GCCGGT GCCGGT GC
1 GCCGGT GCCGGT GCCGGT GCCGGT GCCGGT GC
351883 TGGAGCTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.03, C:0.34, G:0.50, T:0.12
Consensus pattern (6 bp):
GCCGGT
Found at i:356059 original size:25 final size:24
Alignment explanation
Indices: 356018--356065 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
356008 TAATATTTAA
*
356018 AATATTAAAAATCA-TTTTAAAAC
1 AATATTAAAAATAATTTTTAAAAC
356041 AATATATAAAAACTAATTTTTAAAA
1 AATAT-TAAAAA-TAATTTTTAAAA
356066 TACTGTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 5 0.24
24 6 0.29
25 2 0.10
26 8 0.38
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (24 bp):
AATATTAAAAATAATTTTTAAAAC
Found at i:364738 original size:12 final size:12
Alignment explanation
Indices: 364723--364756 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
364713 TGTTTACACT
364723 TTGCCTTTGCCC
1 TTGCCTTTGCCC
*
364735 TTGCCCTTGCCC
1 TTGCCTTTGCCC
364747 TTGCCCTTTG
1 TTG-CCTTTG
364757 TCTTTCAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.00, C:0.41, G:0.18, T:0.41
Consensus pattern (12 bp):
TTGCCTTTGCCC
Found at i:370479 original size:20 final size:19
Alignment explanation
Indices: 370445--370483 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
370435 TTTTATTCAC
370445 ATTTTGGTACTTAATTATCA
1 ATTTTGGTACTTAA-TATCA
370465 ATTTTGGTA-TCTAATATCA
1 ATTTTGGTACT-TAATATCA
370484 TCTATCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.49
Consensus pattern (19 bp):
ATTTTGGTACTTAATATCA
Found at i:372075 original size:60 final size:58
Alignment explanation
Indices: 371898--372245 Score: 339
Period size: 60 Copynumber: 5.9 Consensus size: 58
371888 TGAAAAAAAA
**
371898 TTTTGGGTGTTGGCCATGCAATGGTCGACAACCCTTTTTAATCTGATAAAAAAAATCAAAT
1 TTTTGGGTGTTGGCCATGCAATGACCGAC-ACCC-TTTT-ATCTGATAAAAAAAATCAAAT
* * * * *
371959 TTTTGAGTGTTGGCCATGCAATGACTGACA-TCTTTT-TTTG-TCAAAAAAAT-ACAAT
1 TTTTGGGTGTTGGCCATGCAATGACCGACACCCTTTTATCTGATAAAAAAAATCA-AAT
** * * *
372014 TTTTTTGTGTTGTCCATACAATGGCCGACACCTCTATTTATCTGATAAAAAAAATCAAAT
1 TTTTGGGTGTTGGCCATGCAATGACCGACACC-CT-TTTATCTGATAAAAAAAATCAAAT
* * * *
372074 TTTTGGGTGTTGACCATGCAATGGCCAACATCCCTTTTTTATCAGAT-AAAAAAATC-AAT
1 TTTTGGGTGTTGGCCATGCAATGACCGACA-CCC--TTTTATCTGATAAAAAAAATCAAAT
* * *
372133 TTTTTGGTGTTGGCCATGCAATAACCGACATCCCTATTTATCTAATAAAAAAAATCAAAT
1 TTTTGGGTGTTGGCCATGCAATGACCGACA-CCCT-TTTATCTGATAAAAAAAATCAAAT
* * *
372193 TTTTGGGTGTTGGTCATACAATGACCGACACTCACTTTTATCAGATAAAAAAA
1 TTTTGGGTGTTGGCCATGCAATGACCGACAC-C-CTTTTATCTGATAAAAAAA
372246 TTTCAATTTT
Statistics
Matches: 237, Mismatches: 35, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
54 1 0.00
55 36 0.15
56 3 0.01
57 3 0.01
58 15 0.06
59 46 0.19
60 93 0.39
61 39 0.16
62 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Consensus pattern (58 bp):
TTTTGGGTGTTGGCCATGCAATGACCGACACCCTTTTATCTGATAAAAAAAATCAAAT
Found at i:372191 original size:119 final size:118
Alignment explanation
Indices: 371898--372257 Score: 435
Period size: 119 Copynumber: 3.0 Consensus size: 118
371888 TGAAAAAAAA
* * *
371898 TTTTGGGTGTTGGCCATGCAATGGTCGACAACCCTTTTTAATCTGATAAAAAAAATCAAATTTTT
1 TTTTTGGTGTTGGCCATGCAATGGCCGAC-ACCCTATTT-ATCTGATAAAAAAAATCAAATTTTT
* * * * *
371963 GAGTGTTGGCCATGCAATGACTGACAT-CTTTTTTTGTCA-A-AAAAATA-CAAT
64 GGGTGTTGGCCATGCAATGACCGACATCCCTTTTTTATCAGATAAAAAAATCAAT
* * *
372014 TTTTTTGTGTTGTCCATACAATGGCCGACACCTCTATTTATCTGATAAAAAAAATCAAATTTTTG
1 TTTTTGGTGTTGGCCATGCAATGGCCGACACC-CTATTTATCTGATAAAAAAAATCAAATTTTTG
* * *
372079 GGTGTTGACCATGCAATGGCCAACATCCCTTTTTTATCAGATAAAAAAATCAAT
65 GGTGTTGGCCATGCAATGACCGACATCCCTTTTTTATCAGATAAAAAAATCAAT
** *
372133 TTTTTGGTGTTGGCCATGCAATAACCGACATCCCTATTTATCTAATAAAAAAAATCAAATTTTTG
1 TTTTTGGTGTTGGCCATGCAATGGCCGACA-CCCTATTTATCTGATAAAAAAAATCAAATTTTTG
* * *
372198 GGTGTTGGTCATACAATGACCGACACTCAC--TTTTATCAGATAAAAAAATTTCAAT
65 GGTGTTGGCCATGCAATGACCGACA-TCCCTTTTTTATCAGATAAAAAAA--TCAAT
372253 TTTTT
1 TTTTT
372258 TTGGATTTTT
Statistics
Matches: 209, Mismatches: 26, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
115 50 0.24
116 39 0.19
117 1 0.00
118 24 0.11
119 80 0.38
120 15 0.07
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (118 bp):
TTTTTGGTGTTGGCCATGCAATGGCCGACACCCTATTTATCTGATAAAAAAAATCAAATTTTTGG
GTGTTGGCCATGCAATGACCGACATCCCTTTTTTATCAGATAAAAAAATCAAT
Found at i:372279 original size:35 final size:36
Alignment explanation
Indices: 372228--372296 Score: 113
Period size: 35 Copynumber: 1.9 Consensus size: 36
372218 CGACACTCAC
*
372228 TTTTATCAGATAAAAAAATTTC-AATTTTTTTTGGA
1 TTTTATCAGATAAAAAAATTTCAAAATTTTTTTGGA
*
372263 TTTTTTCAGATAAAAAAATTTCAAAATTTTTTTG
1 TTTTATCAGATAAAAAAATTTCAAAATTTTTTTG
372297 TGTTGGCCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 21 0.68
36 10 0.32
ACGTcount: A:0.38, C:0.06, G:0.07, T:0.49
Consensus pattern (36 bp):
TTTTATCAGATAAAAAAATTTCAAAATTTTTTTGGA
Found at i:372340 original size:61 final size:62
Alignment explanation
Indices: 372263--372570 Score: 400
Period size: 60 Copynumber: 5.1 Consensus size: 62
372253 TTTTTTTGGA
*
372263 TTTTTTCAGATAAAAAAATTTCAAAATTTTTTTGTGTTGGCCATTCAATGGCCGACAC-CCT
1 TTTTTTCAGATAAAAAAATTTCAAAATTTTTTTGTGTTGGCCATGCAATGGCCGACACTCCT
* * *
372324 TTTTTTCAGATAAAAAAA-TTCAAAATTTTTTTGTGTAGGTCATGCAATGG-CGACACTCCC
1 TTTTTTCAGATAAAAAAATTTCAAAATTTTTTTGTGTTGGCCATGCAATGGCCGACACTCCT
* * * * *
372384 TTTTCTCAAATAAAAAAATTTCAAAATTTTTTT-TGTTGGTCATGCAATGACCGACACTCCA
1 TTTTTTCAGATAAAAAAATTTCAAAATTTTTTTGTGTTGGCCATGCAATGGCCGACACTCCT
* * * *
372445 TTTTCTCAGATAAAAAATTTTCAAATTTTTTTTGTGTTGGCCATGCAATGGCCAACACTCCTT
1 TTTTTTCAGATAAAAAAATTTCAAAATTTTTTTGTGTTGGCCATGCAATGGCCGACACTCC-T
* * *
372508 TTTTTTCAGATAAAAAAA-TTC--CATTTTTTGGTGTTGGCCATGCAATGG-CGACA-TCCC
1 TTTTTTCAGATAAAAAAATTTCAAAATTTTTTTGTGTTGGCCATGCAATGGCCGACACTCCT
372565 TTTTTT
1 TTTTTT
372571 ATTTGGTAAA
Statistics
Matches: 219, Mismatches: 23, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
57 6 0.03
58 3 0.01
59 10 0.05
60 86 0.39
61 71 0.32
62 27 0.12
63 16 0.07
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (62 bp):
TTTTTTCAGATAAAAAAATTTCAAAATTTTTTTGTGTTGGCCATGCAATGGCCGACACTCCT
Found at i:372351 original size:97 final size:95
Alignment explanation
Indices: 372177--372356 Score: 231
Period size: 96 Copynumber: 1.9 Consensus size: 95
372167 TATTTATCTA
*
372177 ATAAAAAAAATCAAATTTTTGGGTGTTGGTCATACAATGACCGACACTCACTTTTATCAGATAAA
1 ATAAAAAAAATCAAATTTTTGGGTGTTGGCCATACAATGACCGACACTCACTTTTATCAGATAAA
372242 AAAATTTCAATTTTTTTTGGATTTTTTCAG
66 AAAATTTCAATTTTTTTTGGATTTTTTCAG
* ** * * *
372272 ATAAAAAAATTTCAAAATTTTTTTGTGTTGGCCATTCAATGGCCGACAC-C-CTTTTTTTCAGAT
1 ATAAAAAAA-ATC-AAATTTTTGGGTGTTGGCCATACAATGACCGACACTCAC-TTTTATCAGAT
*
372335 AAAAAAA-TTCAAAATTTTTTTG
63 AAAAAAATTTC-AATTTTTTTTG
372357 TGTAGGTCAT
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
95 13 0.18
96 30 0.41
97 30 0.41
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (95 bp):
ATAAAAAAAATCAAATTTTTGGGTGTTGGCCATACAATGACCGACACTCACTTTTATCAGATAAA
AAAATTTCAATTTTTTTTGGATTTTTTCAG
Found at i:372400 original size:157 final size:155
Alignment explanation
Indices: 372109--372418 Score: 387
Period size: 157 Copynumber: 2.0 Consensus size: 155
372099 CAACATCCCT
372109 TTTTTATCAGATAAAAAAATCAATTTTTTGGTGTTGGCCATGCAATAACCGACATCCCTATTTAT
1 TTTTTATCAGATAAAAAAATCAATTTTTTGGTGTTGGCCATGCAATAACCGACATCCCTATTTAT
* *
372174 CTAATAAAAAAAATCAAATTTTTGGGTGTTGGTCATACAATGACCGACACTCACTTTTATCAGAT
66 CTAATAAAAAAAATCAAATTTTTGGGTGTAGGTCATACAATGACCGACACTCACTTTTATCAAAT
372239 AAAAAAATTTC-AATTTTTTTTGGA
131 AAAAAAATTTCAAATTTTTTTTGGA
* * ** *
372263 TTTTT-TCAGATAAAAAAATTTCAAAATTTTTTTGTGTTGGCCATTCAATGGCCGACA-CCCTTT
1 TTTTTATCAGATAAAAAAA--TC--AATTTTTTGGTGTTGGCCATGCAATAACCGACATCCCTAT
* * ** * * * *
372326 TTTTC-AGATAAAAAAATTCAAAATTTTTTTGTGTAGGTCATGCAATG-GCGACACTCCCTTTTC
62 TTATCTA-ATAAAAAAAATC-AAATTTTTGGGTGTAGGTCATACAATGACCGACACTCACTTTTA
372389 TCAAATAAAAAAATTTCAAAATTTTTTTTG
125 TCAAATAAAAAAATTTC-AAATTTTTTTTG
372419 TTGGTCATGC
Statistics
Matches: 133, Mismatches: 15, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
153 13 0.10
154 5 0.04
155 3 0.02
156 49 0.37
157 52 0.39
158 11 0.08
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (155 bp):
TTTTTATCAGATAAAAAAATCAATTTTTTGGTGTTGGCCATGCAATAACCGACATCCCTATTTAT
CTAATAAAAAAAATCAAATTTTTGGGTGTAGGTCATACAATGACCGACACTCACTTTTATCAAAT
AAAAAAATTTCAAATTTTTTTTGGA
Found at i:372584 original size:58 final size:60
Alignment explanation
Indices: 372263--372607 Score: 278
Period size: 60 Copynumber: 5.7 Consensus size: 60
372253 TTTTTTTGGA
* * *
372263 TTTTTTCAGATAAAAAAATTTCAAAATTTTTTTGTGTTGGCCATTCAATGGCCGACAC-CC-T
1 TTTTTTCAGATAAAAAAA-TT--AAATTTTTTGGTGTTGGCCATGCAATGGCCAACACTCCTT
* * * * *
372324 TTTTTTCAGATAAAAAAATTCAAAATTTTTTTGTGTAGGTCATGCAATGG-CGACACTCC-C
1 TTTTTTCAGATAAAAAAATT--AAATTTTTTGGTGTTGGCCATGCAATGGCCAACACTCCTT
* * * * * * *
372384 TTTTCTCAAATAAAAAAATTTCAAAATTTTTT-TTGTTGGTCATGCAATGACCGACACTCC-A
1 TTTTTTCAGATAAAAAAA-TT--AAATTTTTTGGTGTTGGCCATGCAATGGCCAACACTCCTT
* * *
372445 TTTTCTCAGATAAAAAATTTTCAAATTTTTTTTGTGTTGGCCATGCAATGGCCAACACTCCTT
1 TTTTTTCAGATAAAAAA-ATT-AAA-TTTTTTGGTGTTGGCCATGCAATGGCCAACACTCCTT
** *
372508 TTTTTTCAGATAAAAAAATTCCATTTTTTGGTGTTGGCCATGCAATGG-CGACA-TCCCTT
1 TTTTTTCAGATAAAAAAATTAAATTTTTTGGTGTTGGCCATGCAATGGCCAACACT-CCTT
* * * *
372567 TTTTATT-TGGT-AAAAAATTAAATTTTTTGGTATTGGTCATG
1 TTTT-TTCAGATAAAAAAATTAAATTTTTTGGTGTTGGCCATG
372608 TAATAGCCGA
Statistics
Matches: 245, Mismatches: 30, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
58 27 0.11
59 20 0.08
60 91 0.37
61 65 0.27
62 26 0.11
63 16 0.07
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (60 bp):
TTTTTTCAGATAAAAAAATTAAATTTTTTGGTGTTGGCCATGCAATGGCCAACACTCCTT
Found at i:372818 original size:31 final size:31
Alignment explanation
Indices: 372782--372841 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
372772 TACAATCAAA
*
372782 TTTCGGGGTTGAACTATATACTGTCATGTAT
1 TTTCGGAGTTGAACTATATACTGTCATGTAT
*
372813 TTTCGGAGTTGAATTATATACTGTCATGT
1 TTTCGGAGTTGAACTATATACTGTCATGT
372842 GAAGCGGCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.23, C:0.12, G:0.22, T:0.43
Consensus pattern (31 bp):
TTTCGGAGTTGAACTATATACTGTCATGTAT
Found at i:376349 original size:11 final size:12
Alignment explanation
Indices: 376309--376357 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
376299 TATTTGTGTA
376309 AAAATTAATTTG
1 AAAATTAATTTG
376321 AAAATTAATTTAAG
1 AAAATTAATTT--G
*
376335 TTGAAATTAATTTG
1 --AAAATTAATTTG
376349 AAAATTAAT
1 AAAATTAAT
376358 GAACATGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
12 19 0.61
14 2 0.06
16 10 0.32
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (12 bp):
AAAATTAATTTG
Found at i:376598 original size:84 final size:84
Alignment explanation
Indices: 376461--377616 Score: 1559
Period size: 84 Copynumber: 13.6 Consensus size: 84
376451 AGTTAAAATT
* * *
376461 AATTTAACATTATTTAAATAAAAAAGATTATTATTATATTACAATTTATATCAAATATTGTGTTC
1 AATTTAA-A-TATTTAAAT-AAAAA-ATTATTATTATATTACAATTTTTATCAAATAATGTGTTG
376526 ATTTGACAATACATTATTTA-TCA
62 ATTTGACAATACATTATTTACT-A
** * * *
376549 AATTTTCATATTTAAAGT-ACAATTTATTATTACATTACAATTTTTATCAAATAATGTGTTGATT
1 AATTTAAATATTTAAA-TAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
376613 TGACAATACATTATTTACTA
65 TGACAATACATTATTTACTA
* * * *
376633 AATTTAAATATTTAAATAAAAAAATTATTATTATATTACAATTTATATCAAATATTATGTTAATT
1 AATTTAAATATTTAAAT-AAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
*
376698 TGACAATACATTATTTATCAA
65 TGACAATACATTATTTA-CTA
* * * * * * *
376719 AATTT-CATATTTGAAGT-ACAAACTATTATTATATTACATTTTTTATTAAATAATATGTTGATT
1 AATTTAAATATTT-AAATAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
*
376782 TGACAATACATTATTTATTA
65 TGACAATACATTATTTACTA
* * *
376802 ATTTTAAATATTTAAATCAACAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTT
1 AATTTAAATATTTAAATAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTT
*
376867 GACAATACATTATTTATTA
66 GACAATACATTATTTACTA
* * *
376886 AATTTAAAAATTTAAATAAAAAAAGAATATTATTATTTTACAATTTTTATCAAATAATGTGTTGA
1 AATTTAAATATTTAAAT--AAAAA-ATTATTATTATATTACAATTTTTATCAAATAATGTGTTGA
*
376951 TTTGACAATATATTATTTACTA
63 TTTGACAATACATTATTTACTA
* *
376973 AATTTAAATATTTAAATAAAAAAGATTATTATTATATTACAATTTTTATTAAATAATTTGTTGAT
1 AATTTAAATATTTAAAT-AAAAA-ATTATTATTATATTACAATTTTTATCAAATAATGTGTTGAT
* *
377038 TTGATAATATATTATTTACTA
64 TTGACAATACATTATTTACTA
*
377059 AATTTAAATATTTAGATAAAAATATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
1 AATTTAAATATTTAAATAAAAA-ATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
* * *
377124 TAATAATATATTATTTACTA
65 TGACAATACATTATTTACTA
*
377144 AATTTAAATATTTAAATAAAAAATTATTATTATGTTACAATTTTTATCAAATAATGTGTTGA-TT
1 AATTTAAATATTTAAATAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTT
377208 GAACAATACATTATTTACTA
66 G-ACAATACATTATTTACTA
377228 AATTTAAATATTTTAAATAAAAATTATTATTATTATATTACAATTTTTATCAAATAATGTGTTGA
1 AATTTAAATA-TTTAAATAAAAA--ATTATTATTATATTACAATTTTTATCAAATAATGTGTTGA
* * *
377293 TTTGATAATATATTATTTATTA
63 TTTGACAATACATTATTTACTA
* * **
377315 ATTTTAAATATTTAAAGT-ATAAATTATTATTATATTACAATTTTTATCAAATAATACGTTGATT
1 AATTTAAATATTTAAA-TAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
*
377379 TGACAATATATTATTTACTA
65 TGACAATACATTATTTACTA
**
377399 AATTTAAATATTTAAATAAAAAACATTATTATTATATTTTAATTTTTATCAAATAATGTGTTGAT
1 AATTTAAATATTTAAAT-AAAAA-ATTATTATTATATTACAATTTTTATCAAATAATGTGTTGAT
*
377464 TTGACAATATATTATTTACTA
64 TTGACAATACATTATTTACTA
*
377485 AATTTAAATATTTAAATAAAAAAATAATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
1 AATTTAAATATTTAAAT-AAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
* *
377550 TAACAATACATTATTTATTA
65 TGACAATACATTATTTACTA
* * * *
377570 ATTTTAAATATTTAAATCAACAATTATTATTATATTACATTTTTTAT
1 AATTTAAATATTTAAATAAAAAATTATTATTATATTACAATTTTTAT
377617 TAGATTTTAA
Statistics
Matches: 959, Mismatches: 89, Indels: 44
0.88 0.08 0.04
Matches are distributed among these distances:
83 12 0.01
84 370 0.39
85 238 0.25
86 191 0.20
87 140 0.15
88 8 0.01
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.47
Consensus pattern (84 bp):
AATTTAAATATTTAAATAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTT
GACAATACATTATTTACTA
Found at i:376960 original size:171 final size:169
Alignment explanation
Indices: 376461--377616 Score: 1590
Period size: 171 Copynumber: 6.8 Consensus size: 169
376451 AGTTAAAATT
* * *
376461 AATTTAACATTATTTAAATAAAAAAGATTATTATTATATTACAATTTATATCAAATATTGTGTTC
1 AATTTAA-A-TATTTAAATAAAAAA-ATTATTATTATATTACAATTTTTATCAAATAATGTGTTG
* ** * * *
376526 ATTTGACAATACATTATTTATCAAATTTTCATATTTAAAGT-ACAATTTATTATTACATTACAAT
63 ATTTGACAATACATTATTTATTAAATTTAAATATTTAAA-TAAAAAATTATTATTATATTACAAT
*
376590 TTTTATCAAATAATGTGTTGATTTGACAATACATTATTTACTA
127 TTTTATCAAATAATGTGTTGATTTGACAATATATTATTTACTA
* * * *
376633 AATTTAAATATTTAAATAAAAAAATTATTATTATATTACAATTTATATCAAATATTATGTTAATT
1 AATTTAAATATTTAAATAAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
* * * * * *
376698 TGACAATACATTATTTATCAAAATTT-CATATTTGAAGT-ACAAACTATTATTATATTACATTTT
66 TGACAATACATTATTTAT-TAAATTTAAATATTT-AAATAAAAAATTATTATTATATTACAATTT
* * * *
376761 TTATTAAATAATATGTTGATTTGACAATACATTATTTATTA
129 TTATCAAATAATGTGTTGATTTGACAATATATTATTTACTA
* * *
376802 ATTTTAAATATTTAAAT-CAACAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
1 AATTTAAATATTTAAATAAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
* * *
376866 TGACAATACATTATTTATTAAATTTAAAAATTTAAATAAAAAAAGAATATTATTATTTTACAATT
66 TGACAATACATTATTTATTAAATTTAAATATTTAAAT--AAAAA-ATTATTATTATATTACAATT
376931 TTTATCAAATAATGTGTTGATTTGACAATATATTATTTACTA
128 TTTATCAAATAATGTGTTGATTTGACAATATATTATTTACTA
* *
376973 AATTTAAATATTTAAATAAAAAAGATTATTATTATATTACAATTTTTATTAAATAATTTGTTGAT
1 AATTTAAATATTTAAATAAAAAA-ATTATTATTATATTACAATTTTTATCAAATAATGTGTTGAT
* * * *
377038 TTGATAATATATTATTTACTAAATTTAAATATTTAGATAAAAATATTATTATTATATTACAATTT
65 TTGACAATACATTATTTATTAAATTTAAATATTTAAATAAAAA-ATTATTATTATATTACAATTT
* *
377103 TTATCAAATAATGTGTTGATTTAATAATATATTATTTACTA
129 TTATCAAATAATGTGTTGATTTGACAATATATTATTTACTA
*
377144 AATTTAAATATTTAAAT-AAAAAATTATTATTATGTTACAATTTTTATCAAATAATGTGTTGA-T
1 AATTTAAATATTTAAATAAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
*
377207 TGAACAATACATTATTTACTAAATTTAAATATTTTAAATAAAAATTATTATTATTATATTACAAT
66 TG-ACAATACATTATTTATTAAATTTAAATA-TTTAAATAAAAA--ATTATTATTATATTACAAT
* *
377272 TTTTATCAAATAATGTGTTGATTTGATAATATATTATTTATTA
127 TTTTATCAAATAATGTGTTGATTTGACAATATATTATTTACTA
* * **
377315 ATTTTAAATATTTAAAGT--ATAAATTATTATTATATTACAATTTTTATCAAATAATACGTTGAT
1 AATTTAAATATTTAAA-TAAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGAT
* * **
377378 TTGACAATATATTATTTACTAAATTTAAATATTTAAATAAAAAACATTATTATTATATTTTAATT
65 TTGACAATACATTATTTATTAAATTTAAATATTTAAAT-AAAAA-ATTATTATTATATTACAATT
377443 TTTATCAAATAATGTGTTGATTTGACAATATATTATTTACTA
128 TTTATCAAATAATGTGTTGATTTGACAATATATTATTTACTA
*
377485 AATTTAAATATTTAAATAAAAAAATAATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
1 AATTTAAATATTTAAATAAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
* * * * *
377550 TAACAATACATTATTTATTAATTTTAAATATTTAAATCAACAATTATTATTATATTACATTTTTT
66 TGACAATACATTATTTATTAAATTTAAATATTTAAATAAAAAATTATTATTATATTACAATTTTT
377615 AT
131 AT
377617 TAGATTTTAA
Statistics
Matches: 889, Mismatches: 78, Indels: 37
0.89 0.08 0.04
Matches are distributed among these distances:
167 9 0.01
168 67 0.08
169 227 0.26
170 125 0.14
171 375 0.42
172 14 0.02
173 72 0.08
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.47
Consensus pattern (169 bp):
AATTTAAATATTTAAATAAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATT
TGACAATACATTATTTATTAAATTTAAATATTTAAATAAAAAATTATTATTATATTACAATTTTT
ATCAAATAATGTGTTGATTTGACAATATATTATTTACTA
Found at i:377365 original size:426 final size:422
Alignment explanation
Indices: 376472--377616 Score: 1647
Period size: 426 Copynumber: 2.7 Consensus size: 422
376462 ATTTAACATT
* * *
376472 ATTTAAATAAAAAAGATTATTATTATATTACAATTTATATCAAATATTGTGTTCATTTGACAATA
1 ATTTAAAT-AAAAAGATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGACAATA
* ** * * *
376537 CATTATTTA-TCAAATTTTCATATTTAAAGT--ACAATTTATTATTACATTACAATTTTTATCAA
65 TATTATTTACT-AAATTTAAATATTTAAA-TAAAAAAATTATTATTATATTACAATTTTTATCAA
*
376599 ATAATGTGTTGATTTGACAATACATTATTTACTAAATTTAAATATTTAAATAAAAAAATTATTAT
128 ATAATGTGTTGATTTGACAATATATTATTTACTAAATTTAAATATTTAAATAAAAAAATTATTAT
* * * * * * *
376664 TATATTACAATTTATATCAAATATTATGTTAATTTGACAATACATTATTTATCAAAATTT-CATA
193 TATATTACAATTTTTATCAAATAATGTGTTGATTTAACAATACATTATTTA-CTAAATTTAAATA
* * * *
376728 TTTGAAGTACAAACTATTATTATATTACATTTTTTATTAAATAATATGTTGATTTGACAATACAT
257 TTT-AAATAAAAATTATTATTATATTACATTTTTTATCAAATAATATGTTGATTTGACAATACAT
* * * *
376793 TATTTATTAATTTTAAATATTTAAATCAACAATTATTATTATATTACAATTTTTATCAAATAATG
321 TATTTACTAAATTTAAATATTTAAATAAAAAATTATTATTATATTACAATTTTTATCAAATAATG
376858 TGTTGATTTGACAATACATTATTTATTAAATTTAAAA
386 TGTTGATTTGACAATACATTATTTATTAAATTTAAAA
* *
376895 ATTTAAATAAAAAAAGAATATTATTATTTTACAATTTTTATCAAATAATGTGTTGATTTGACAAT
1 ATTTAAAT--AAAAAGATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGACAAT
*
376960 ATATTATTTACTAAATTTAAATATTTAAATAAAAAAGATTATTATTATATTACAATTTTTATTAA
64 ATATTATTTACTAAATTTAAATATTTAAATAAAAAA-ATTATTATTATATTACAATTTTTATCAA
* * * *
377025 ATAATTTGTTGATTTGATAATATATTATTTACTAAATTTAAATATTTAGATAAAAATATTATTAT
128 ATAATGTGTTGATTTGACAATATATTATTTACTAAATTTAAATATTTAAATAAAAAAATTATTAT
* *
377090 TATATTACAATTTTTATCAAATAATGTGTTGATTTAATAATATATTATTTACTAAATTTAAATAT
193 TATATTACAATTTTTATCAAATAATGTGTTGATTTAACAATACATTATTTACTAAATTTAAATAT
* * *
377155 TTAAATAAAAAATTATTATTATGTTACAATTTTTATCAAATAATGTGTTGA-TTGAACAATACAT
258 TTAAAT-AAAAATTATTATTATATTACATTTTTTATCAAATAATATGTTGATTTG-ACAATACAT
377219 TATTTACTAAATTTAAATATTTTAAATAAAAATTATTATTATTATATTACAATTTTTATCAAATA
321 TATTTACTAAATTTAAATA-TTTAAATAAAAA--ATTATTATTATATTACAATTTTTATCAAATA
* * * *
377284 ATGTGTTGATTTGATAATATATTATTTATTAATTTTAAAT
383 ATGTGTTGATTTGACAATACATTATTTATTAAATTTAAAA
* **
377324 ATTTAAAGT-ATAA-ATTATTATTATATTACAATTTTTATCAAATAATACGTTGATTTGACAATA
1 ATTTAAA-TAAAAAGATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGACAATA
**
377387 TATTATTTACTAAATTTAAATATTTAAATAAAAAACATTATTATTATATTTTAATTTTTATCAAA
65 TATTATTTACTAAATTTAAATATTTAAATAAAAAA-ATTATTATTATATTACAATTTTTATCAAA
*
377452 TAATGTGTTGATTTGACAATATATTATTTACTAAATTTAAATATTTAAATAAAAAAATAATTATT
129 TAATGTGTTGATTTGACAATATATTATTTACTAAATTTAAATATTTAAATAAAAAAATTATTATT
* *
377517 ATATTACAATTTTTATCAAATAATGTGTTGATTTAACAATACATTATTTATTAATTTTAAATATT
194 ATATTACAATTTTTATCAAATAATGTGTTGATTTAACAATACATTATTTACTAAATTTAAATATT
*
377582 TAAATCAACAATTATTATTATATTACATTTTTTAT
259 TAAAT-AAAAATTATTATTATATTACATTTTTTAT
377617 TAGATTTTAA
Statistics
Matches: 647, Mismatches: 63, Indels: 21
0.89 0.09 0.03
Matches are distributed among these distances:
423 9 0.01
424 75 0.12
425 17 0.03
426 458 0.71
427 13 0.02
429 74 0.11
430 1 0.00
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.47
Consensus pattern (422 bp):
ATTTAAATAAAAAGATTATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGACAATAT
ATTATTTACTAAATTTAAATATTTAAATAAAAAAATTATTATTATATTACAATTTTTATCAAATA
ATGTGTTGATTTGACAATATATTATTTACTAAATTTAAATATTTAAATAAAAAAATTATTATTAT
ATTACAATTTTTATCAAATAATGTGTTGATTTAACAATACATTATTTACTAAATTTAAATATTTA
AATAAAAATTATTATTATATTACATTTTTTATCAAATAATATGTTGATTTGACAATACATTATTT
ACTAAATTTAAATATTTAAATAAAAAATTATTATTATATTACAATTTTTATCAAATAATGTGTTG
ATTTGACAATACATTATTTATTAAATTTAAAA
Found at i:379352 original size:30 final size:30
Alignment explanation
Indices: 379318--379378 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
379308 ATTTTTTTTC
379318 CGTTTACT-TTTTAAATTTAATTTATAATTT
1 CGTTT-CTATTTTAAATTTAATTTATAATTT
* *
379348 CGTTTTTATTTTAAATTTAATTTCTAATTT
1 CGTTTCTATTTTAAATTTAATTTATAATTT
379378 C
1 C
379379 CTGTATATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 27 0.96
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (30 bp):
CGTTTCTATTTTAAATTTAATTTATAATTT
Found at i:379388 original size:30 final size:30
Alignment explanation
Indices: 379326--379415 Score: 112
Period size: 30 Copynumber: 3.1 Consensus size: 30
379316 TCCGTTTACT
* * * *
379326 TTTTAAATTTAATTTATAATTTCGTTTTTA
1 TTTTAAATTTAATTTCTAATTTCCTATATA
*
379356 TTTTAAATTTAATTTCTAATTTCCTGTATA
1 TTTTAAATTTAATTTCTAATTTCCTATATA
*
379386 TTTT-AATTT-TTTTCTAATTTCCTATATA
1 TTTTAAATTTAATTTCTAATTTCCTATATA
379414 TT
1 TT
379416 CTAATTATTA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
28 19 0.35
29 5 0.09
30 30 0.56
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.62
Consensus pattern (30 bp):
TTTTAAATTTAATTTCTAATTTCCTATATA
Found at i:380322 original size:42 final size:42
Alignment explanation
Indices: 380255--380338 Score: 159
Period size: 43 Copynumber: 2.0 Consensus size: 42
380245 ATTACATGGT
380255 CAACACAAAAAAATTTGAAATTTTTTTATTTGAGAAAAGGGC
1 CAACACAAAAAAATTTGAAATTTTTTTATTTGAGAAAAGGGC
380297 CAACACCAAAAAAATTTGAAATTTTTTTATTTGAGAAAAGGG
1 CAACA-CAAAAAAATTTGAAATTTTTTTATTTGAGAAAAGGG
380339 GGTGTCGGCC
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 5 0.12
43 36 0.88
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (42 bp):
CAACACAAAAAAATTTGAAATTTTTTTATTTGAGAAAAGGGC
Found at i:380402 original size:61 final size:62
Alignment explanation
Indices: 380294--380554 Score: 341
Period size: 61 Copynumber: 4.3 Consensus size: 62
380284 TTGAGAAAAG
* * *
380294 GGCCAACACCAAAAAAA-TTTGAAATTTTTTTATTTGAGAAAAGGGGGTGTCGGCCATGGCAT
1 GGCCAACA-CAAAAAAATTTTGAAATTTTTTTATCTGAGAAAAAGGGGTGTCGGCCATTGCAT
380356 GGCCAACACAAAAAAATTTTGAAATTTTTTTATCTGA-AAAAAGGGGTGTCGGCCATTGCAT
1 GGCCAACACAAAAAAATTTTGAAATTTTTTTATCTGAGAAAAAGGGGTGTCGGCCATTGCAT
* * * * *
380417 GACCAACACCAAAAAATTTTGAAA-TTTTTTATCTGAGAAAAGGGGGTATTGGCCATTGCAT
1 GGCCAACACAAAAAAATTTTGAAATTTTTTTATCTGAGAAAAAGGGGTGTCGGCCATTGCAT
** * * * ** *
380478 GGCCAACACCCAAAAATTTT-AATTTTTTTTATCAGATAATTAGGGGTGTCGACCATTGCAT
1 GGCCAACACAAAAAAATTTTGAAATTTTTTTATCTGAGAAAAAGGGGTGTCGGCCATTGCAT
380539 GGCCAACACAAAAAAA
1 GGCCAACACAAAAAAA
380555 AATTGTATTT
Statistics
Matches: 175, Mismatches: 21, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
60 14 0.08
61 134 0.77
62 27 0.15
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (62 bp):
GGCCAACACAAAAAAATTTTGAAATTTTTTTATCTGAGAAAAAGGGGTGTCGGCCATTGCAT
Found at i:380459 original size:122 final size:122
Alignment explanation
Indices: 380296--380572 Score: 378
Period size: 122 Copynumber: 2.3 Consensus size: 122
380286 GAGAAAAGGG
* *
380296 CCAACACCAAAAAAATTTGAAATTTTTTTATTTGAGAAAAGGGGGTGTCGGCCATGGCATGGCCA
1 CCAACACCAAAAAAATTTGAAA-TTTTTTATCTGAGAAAAGGGGGTATCGGCCATGGCATGGCCA
* *
380361 ACACAAAAAAATTTTGAAATTTTTTTATCTGA-AAAAAGGGGTGTCGGCCATTGCATGA
65 ACACAAAAAAATTTT-AAATTTTTTTATCAGATAAAAAGGGGTGTCGACCATTGCATGA
* * *
380419 CCAACACCAAAAAATTTTGAAATTTTTTATCTGAGAAAAGGGGGTATTGGCCATTGCATGGCCAA
1 CCAACACCAAAAAAATTTGAAATTTTTTATCTGAGAAAAGGGGGTATCGGCCATGGCATGGCCAA
** * ** *
380484 CACCCAAAAATTTTAATTTTTTTTATCAGATAATTAGGGGTGTCGACCATTGCATGG
66 CACAAAAAAATTTTAAATTTTTTTATCAGATAAAAAGGGGTGTCGACCATTGCATGA
* * *
380541 CCAACACAAAAAAAAATTG-TATTTTTTATCTG
1 CCAACACCAAAAAAATTTGAAATTTTTTATCTG
380573 GCAATGGCCA
Statistics
Matches: 136, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
121 26 0.19
122 89 0.65
123 21 0.15
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (122 bp):
CCAACACCAAAAAAATTTGAAATTTTTTATCTGAGAAAAGGGGGTATCGGCCATGGCATGGCCAA
CACAAAAAAATTTTAAATTTTTTTATCAGATAAAAAGGGGTGTCGACCATTGCATGA
Found at i:385937 original size:25 final size:24
Alignment explanation
Indices: 385886--385951 Score: 60
Period size: 25 Copynumber: 2.6 Consensus size: 24
385876 AAATATTTTA
* *
385886 GAATCAAAACCCCAAATCAAAATT
1 GAATCAAAACCCAAAATCAAAACT
* *
385910 GAATCCAAATCCCAAAATCATAACT
1 GAAT-CAAAACCCAAAATCAAAACT
*
385935 GAAAATGAAAACCCAAA
1 G--AATCAAAACCCAAA
385952 TCGACACCTA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 4 0.12
25 17 0.52
26 9 0.27
27 3 0.09
ACGTcount: A:0.55, C:0.24, G:0.06, T:0.15
Consensus pattern (24 bp):
GAATCAAAACCCAAAATCAAAACT
Found at i:386068 original size:2 final size:2
Alignment explanation
Indices: 386061--386090 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
386051 ACCATCTTTC
386061 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
386091 TCTTCTCCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:387746 original size:2 final size:2
Alignment explanation
Indices: 387741--387771 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
387731 CAATACACAC
387741 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
387772 ATCAACTCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:393003 original size:184 final size:184
Alignment explanation
Indices: 392600--393284 Score: 1207
Period size: 182 Copynumber: 3.7 Consensus size: 184
392590 GTACCATACA
392600 ACTTTTGTTATAGTGATATGATTTCCAATTCTTCTCTTATTAACAATCCATTTTGTGACTTTATG
1 ACTTTTGTTATAGTGATATGATTTCCAATTCTTCTCTTATTAACAATCCATTTTGTGACTTTATG
*
392665 CGCTTCATTTTTATTTTAATAACCCTC--TTTTTTTTCTTTTGGATTATTGAGCATTTTAATGAC
66 CACTTCATTTTTATTTTAATAACCCTCTTTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGAC
* * *
392728 TCTCGAAAGTATTATTGTCTAACACTCAGCTATGTACTGTGGTCATTATACACT
131 TCTCTAAAGTATTATTGTCTAACACTCAGCTACGTACCGTGGTCATTATACACT
*
392782 ACTTTTGTTATAGTGATATGATTTCCAATTATTCTCTTATTAACAATCCATTTTGTGACTTTATG
1 ACTTTTGTTATAGTGATATGATTTCCAATTCTTCTCTTATTAACAATCCATTTTGTGACTTTATG
*
392847 CACTTCATTTTTATTTTAATAACCCTCTTTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGCC
66 CACTTCATTTTTATTTTAATAACCCTCTTTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGAC
* *
392912 TCTCTAAAGTATTATTGTCTAGCACTCAGCTACGTACCGTGGTTATTATACACT
131 TCTCTAAAGTATTATTGTCTAACACTCAGCTACGTACCGTGGTCATTATACACT
* *
392966 ACTTTTGTTATAGTGATATGATTTCCAGTTCTTCTCTTATTAACAATCCCTTTTGTGACTTTATG
1 ACTTTTGTTATAGTGATATGATTTCCAATTCTTCTCTTATTAACAATCCATTTTGTGACTTTATG
393031 CACTTCATTTTTATTTTAATAACCCT-TTTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGAC
66 CACTTCATTTTTATTTTAATAACCCTCTTTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGAC
* * *
393095 TCTCTAAATTATTATTGTCTAACACTCAGCTACATACCGTGGTCATTATACACA
131 TCTCTAAAGTATTATTGTCTAACACTCAGCTACGTACCGTGGTCATTATACACT
*
393149 AC-TTTGTTATAGTGATATGATTTCCAATTCTTCTCTTGTTAACAATCCATTTTGTGACTTTATG
1 ACTTTTGTTATAGTGATATGATTTCCAATTCTTCTCTTATTAACAATCCATTTTGTGACTTTATG
*
393213 CACTTCATTTTTATTTTAATAACCCTCTTTTTTTTTTCTTTTGTATTATTGAGCATTTTAATGAC
66 CACTTCATTTTTATTTTAATAACCCTCTTTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGAC
393278 TCTCTAA
131 TCTCTAA
393285 TATATTTTGT
Statistics
Matches: 479, Mismatches: 21, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
182 175 0.37
183 132 0.28
184 172 0.36
ACGTcount: A:0.24, C:0.17, G:0.10, T:0.48
Consensus pattern (184 bp):
ACTTTTGTTATAGTGATATGATTTCCAATTCTTCTCTTATTAACAATCCATTTTGTGACTTTATG
CACTTCATTTTTATTTTAATAACCCTCTTTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGAC
TCTCTAAAGTATTATTGTCTAACACTCAGCTACGTACCGTGGTCATTATACACT
Found at i:393272 original size:366 final size:366
Alignment explanation
Indices: 392600--393284 Score: 1228
Period size: 366 Copynumber: 1.9 Consensus size: 366
392590 GTACCATACA
392600 ACTTTTGTTATAGTGATATGATTTCCAATTCTTCTCTTATTAACAATCCATTTTGTGACTTTATG
1 ACTTTTGTTATAGTGATATGATTTCCAATTCTTCTCTTATTAACAATCCATTTTGTGACTTTATG
*
392665 CGCTTCATTTTTATTTTAATAACCCTCTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGACTC
66 CACTTCATTTTTATTTTAATAACCCTCTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGACTC
** * *
392730 TCGAAAGTATTATTGTCTAACACTCAGCTATGTACTGTGGTCATTATACACTACTTTTGTTATAG
131 TCGAAAGTATTATTGTCTAACACTCAGCTACATACCGTGGTCATTATACACAACTTTTGTTATAG
392795 TGATATGATTTCCAATTATTCTCTTATTAACAATCCATTTTGTGACTTTATGCACTTCATTTTTA
196 TGATATGATTTCCAATTATTCTCTTATTAACAATCCATTTTGTGACTTTATGCACTTCATTTTTA
*
392860 TTTTAATAACCCTCTTTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGCCTCTCTAAAGTATT
261 TTTTAATAACCCTCTTTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGACTCTCTAAAGTATT
392925 ATTGTCTAGCACTCAGCTACGTACCGTGGTTATTATACACT
326 ATTGTCTAGCACTCAGCTACGTACCGTGGTTATTATACACT
* *
392966 ACTTTTGTTATAGTGATATGATTTCCAGTTCTTCTCTTATTAACAATCCCTTTTGTGACTTTATG
1 ACTTTTGTTATAGTGATATGATTTCCAATTCTTCTCTTATTAACAATCCATTTTGTGACTTTATG
*
393031 CACTTCATTTTTATTTTAATAACCCTTTTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGACT
66 CACTTCATTTTTATTTTAATAACCC-TCTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGACT
* *
393096 CTCTAAATTATTATTGTCTAACACTCAGCTACATACCGTGGTCATTATACACAAC-TTTGTTATA
130 CTCGAAAGTATTATTGTCTAACACTCAGCTACATACCGTGGTCATTATACACAACTTTTGTTATA
* *
393160 GTGATATGATTTCCAATTCTTCTCTTGTTAACAATCCATTTTGTGACTTTATGCACTTCATTTTT
195 GTGATATGATTTCCAATTATTCTCTTATTAACAATCCATTTTGTGACTTTATGCACTTCATTTTT
*
393225 ATTTTAATAACCCTCTTTTTTTTTTCTTTTGTATTATTGAGCATTTTAATGACTCTCTAA
260 ATTTTAATAACCCTCTTTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGACTCTCTAA
393285 TATATTTTGT
Statistics
Matches: 304, Mismatches: 14, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
366 217 0.71
367 87 0.29
ACGTcount: A:0.24, C:0.17, G:0.10, T:0.48
Consensus pattern (366 bp):
ACTTTTGTTATAGTGATATGATTTCCAATTCTTCTCTTATTAACAATCCATTTTGTGACTTTATG
CACTTCATTTTTATTTTAATAACCCTCTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGACTC
TCGAAAGTATTATTGTCTAACACTCAGCTACATACCGTGGTCATTATACACAACTTTTGTTATAG
TGATATGATTTCCAATTATTCTCTTATTAACAATCCATTTTGTGACTTTATGCACTTCATTTTTA
TTTTAATAACCCTCTTTTTTTTTTCTTTTGGATTATTGAGCATTTTAATGACTCTCTAAAGTATT
ATTGTCTAGCACTCAGCTACGTACCGTGGTTATTATACACT
Found at i:396066 original size:3 final size:3
Alignment explanation
Indices: 396058--396086 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
396048 TGAAATCCCC
396058 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
396087 ATGCAAGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:397508 original size:16 final size:15
Alignment explanation
Indices: 397487--397516 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
397477 GAAAATGAAA
397487 AGAATAAAGAAAAAAG
1 AGAATAAA-AAAAAAG
397503 AGAATAAAAAAAAA
1 AGAATAAAAAAAAA
397517 TTGGAAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (15 bp):
AGAATAAAAAAAAAG
Found at i:397679 original size:6 final size:6
Alignment explanation
Indices: 397670--397694 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
397660 ATATATATAT
397670 AAATTA AAATTA AAATTA AAATTA A
1 AAATTA AAATTA AAATTA AAATTA A
397695 GATCCTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATTA
Found at i:398470 original size:17 final size:18
Alignment explanation
Indices: 398437--398470 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
398427 GCTGAGGCAA
398437 ATCAAACAAAATAAATAT
1 ATCAAACAAAATAAATAT
*
398455 ATCAAA-AAAATTAATA
1 ATCAAACAAAATAAATA
398471 ATAATAGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.68, C:0.09, G:0.00, T:0.24
Consensus pattern (18 bp):
ATCAAACAAAATAAATAT
Found at i:400678 original size:2 final size:2
Alignment explanation
Indices: 400637--400669 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
400627 GAATCTTCTT
400637 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
400670 TGAATATATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:402028 original size:9 final size:9
Alignment explanation
Indices: 402014--402065 Score: 50
Period size: 9 Copynumber: 5.8 Consensus size: 9
402004 TCAAAACTCT
*
402014 TTATTATTA
1 TTATTATTG
402023 TTATTATTG
1 TTATTATTG
* *
402032 TTGTTGTTG
1 TTATTATTG
* *
402041 TTGTTGTTG
1 TTATTATTG
*
402050 TTATTATTA
1 TTATTATTG
402059 TTATTAT
1 TTATTAT
402066 CATCAATTCA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.19, C:0.00, G:0.13, T:0.67
Consensus pattern (9 bp):
TTATTATTG
Found at i:402400 original size:25 final size:25
Alignment explanation
Indices: 402372--402425 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
402362 TAAAGAAAAT
402372 TATTTTTATAAATTTCATAATTTGA
1 TATTTTTATAAATTTCATAATTTGA
402397 TATTTTTATAAATTTCATAATTTGA
1 TATTTTTATAAATTTCATAATTTGA
402422 TATT
1 TATT
402426 ATAACTTTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (25 bp):
TATTTTTATAAATTTCATAATTTGA
Found at i:408906 original size:54 final size:54
Alignment explanation
Indices: 408820--409086 Score: 279
Period size: 54 Copynumber: 4.9 Consensus size: 54
408810 TTTTATACAA
* * *
408820 GCAAGTCCTTCAACTCAAAAAT-TCTTTCCATTCATCTTGTAATCACAGGCACAG
1 GCAACTCCTTCAACTC-AAAATCTCTTTCCATTCACCTTGTGATCACAGGCACAG
* * * * *
408874 GCACCTCCTGCAAGTCAGAGA-CTCTTTCCATTCACCTTGTAATCACAGGCAACAG
1 GCAACTCCTTCAACTCA-AAATCTCTTTCCATTCACCTTGTGATCACAGGC-ACAG
* * * * * * * * *
408929 GTAAATCTTTCACCTCAAAATATTTTTCCATTTATCTTGTGATCACAGGTACAG
1 GCAACTCCTTCAACTCAAAATCTCTTTCCATTCACCTTGTGATCACAGGCACAG
* *
408983 ACGACTCCTTCAACTCAGAAAT-TCTTTCCATTCACCTTGTGATCACAGGCACAG
1 GCAACTCCTTCAACTCA-AAATCTCTTTCCATTCACCTTGTGATCACAGGCACAG
* * *
409037 GCAAGTCCTTCAACTCAAAATCTCTTTCCATTCAGCTTGTGATCATAGGC
1 GCAACTCCTTCAACTCAAAATCTCTTTCCATTCACCTTGTGATCACAGGC
409087 CTAAGACGAT
Statistics
Matches: 172, Mismatches: 35, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
53 5 0.03
54 126 0.73
55 41 0.24
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.30
Consensus pattern (54 bp):
GCAACTCCTTCAACTCAAAATCTCTTTCCATTCACCTTGTGATCACAGGCACAG
Found at i:409094 original size:109 final size:110
Alignment explanation
Indices: 408820--409095 Score: 339
Period size: 109 Copynumber: 2.5 Consensus size: 110
408810 TTTTATACAA
* *
408820 GCAAGTCCTTCAACTCAAAAATTCTTTCCATTCATCTTGTAATCACAGGC-ACAGGC-ACCTCCT
1 GCAAGTCCTTCAACTC-AAAATTCTTTCCATTCATCTTGTGATCACAGGCTACAGACGACCTCCT
* *
408883 GCAAGTCAGAGACTCTTTCCATTCACCTTGTAATCACAGGCAACAG
65 GCAACTCAGAAACTCTTTCCATTCACCTTGTAATCACAGGCAACAG
* * * * * *
408929 GTAAATCTTTCACCTCAAAATATTTTTCCATTTATCTTGTGATCACAGG-TACAGACGA-CTCCT
1 GCAAGTCCTTCAACTCAAAAT-TCTTTCCATTCATCTTGTGATCACAGGCTACAGACGACCTCCT
* * *
408992 TCAACTCAGAAATTCTTTCCATTCACCTTGTGATCACAGGC-ACAG
65 GCAACTCAGAAACTCTTTCCATTCACCTTGTAATCACAGGCAACAG
* *
409037 GCAAGTCCTTCAACTCAAAATCTCTTTCCATTCAGCTTGTGATCATAGGCCTA-AGACGA
1 GCAAGTCCTTCAACTCAAAAT-TCTTTCCATTCATCTTGTGATCACAGG-CTACAGACGA
409096 TATAGCATAA
Statistics
Matches: 140, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
108 49 0.35
109 88 0.63
110 3 0.02
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (110 bp):
GCAAGTCCTTCAACTCAAAATTCTTTCCATTCATCTTGTGATCACAGGCTACAGACGACCTCCTG
CAACTCAGAAACTCTTTCCATTCACCTTGTAATCACAGGCAACAG
Found at i:409520 original size:21 final size:22
Alignment explanation
Indices: 409494--409540 Score: 71
Period size: 20 Copynumber: 2.2 Consensus size: 22
409484 ATTTTCACCC
409494 TGAAAAAAATT-AAATTC-ATA
1 TGAAAAAAATTGAAATTCAATA
*
409514 TGAAAAATATTGAAATTCAATA
1 TGAAAAAAATTGAAATTCAATA
409536 TGAAA
1 TGAAA
409541 TTGCTGATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 10 0.42
21 6 0.25
22 8 0.33
ACGTcount: A:0.57, C:0.04, G:0.09, T:0.30
Consensus pattern (22 bp):
TGAAAAAAATTGAAATTCAATA
Found at i:409979 original size:20 final size:20
Alignment explanation
Indices: 409954--409997 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
409944 TAAGCAACAT
*
409954 AAATTAATAATAACT-AAGAA
1 AAATT-ATAAAAACTCAAGAA
*
409974 AAATTATAAAAATTCAAGAA
1 AAATTATAAAAACTCAAGAA
409994 AAAT
1 AAAT
409998 ATAGCAGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.25
Consensus pattern (20 bp):
AAATTATAAAAACTCAAGAA
Found at i:410990 original size:26 final size:27
Alignment explanation
Indices: 410936--410990 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
410926 TTCTTCCTTT
*
410936 TTCATCCATTACCACTTATTTCTCATC
1 TTCATCCACTACCACTTATTTCTCATC
410963 TTCATCCACTACCACTT-TTTCTCATC
1 TTCATCCACTACCACTTATTTCTCATC
410989 TT
1 TT
410991 TTTTCTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 11 0.41
27 16 0.59
ACGTcount: A:0.20, C:0.35, G:0.00, T:0.45
Consensus pattern (27 bp):
TTCATCCACTACCACTTATTTCTCATC
Found at i:411875 original size:30 final size:31
Alignment explanation
Indices: 411811--411882 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 31
411801 ACAACAAGAG
* *
411811 GACTATTTTGTCACTTTTCGATAACTTTAGT
1 GACTATTTTGTCACTTTTCGATAAATTGAGT
*
411842 GACTGTTTTGTCACATTTTC-A-AAATTGAGT
1 GACTATTTTGTCAC-TTTTCGATAAATTGAGT
411872 GACTATTTTGT
1 GACTATTTTGT
411883 TAAACGTATC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
30 17 0.47
31 14 0.39
32 5 0.14
ACGTcount: A:0.24, C:0.14, G:0.15, T:0.47
Consensus pattern (31 bp):
GACTATTTTGTCACTTTTCGATAAATTGAGT
Found at i:414764 original size:8 final size:8
Alignment explanation
Indices: 414742--414780 Score: 51
Period size: 8 Copynumber: 4.5 Consensus size: 8
414732 TGACATCGTC
414742 AATAATTCA
1 AATAATT-A
414751 ACATAATTA
1 A-ATAATTA
414760 AATAATTA
1 AATAATTA
414768 AATAATATA
1 AATAAT-TA
414777 AATA
1 AATA
414781 GTACTAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 13 0.46
9 9 0.32
10 6 0.21
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (8 bp):
AATAATTA
Found at i:414765 original size:18 final size:17
Alignment explanation
Indices: 414742--414780 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
414732 TGACATCGTC
414742 AATAATTCAACATAAT-TA
1 AATAATT-AA-ATAATATA
414760 AATAATTAAATAATATA
1 AATAATTAAATAATATA
414777 AATA
1 AATA
414781 GTACTAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 5 0.25
17 8 0.40
18 7 0.35
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (17 bp):
AATAATTAAATAATATA
Found at i:415069 original size:5 final size:5
Alignment explanation
Indices: 415059--415084 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
415049 CATCATACAC
415059 GGCAT GGCAT GGCAT GGCAT GGCAT G
1 GGCAT GGCAT GGCAT GGCAT GGCAT G
415085 ACTGAATGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.42, T:0.19
Consensus pattern (5 bp):
GGCAT
Found at i:415286 original size:150 final size:152
Alignment explanation
Indices: 415007--415310 Score: 567
Period size: 150 Copynumber: 2.0 Consensus size: 152
414997 TGCAAGGCAA
415007 TTGTGTAGTCTTATTATGCAAATTGATGGCCAAAATCTTATGCATCATACACGGCATGGCATGGC
1 TTGTGTAGTCTTATTATGCAAATTGATGGCCAAAATCTTATGCATCATACA--GCA-GGCATGGC
415072 ATGGCATGGCATGACTGAATGGGATGATTAAGCATGGAAAAGGAAAGTCATTGTTTTCACTTTTC
63 ATGGCATGGCATGACTGAATGGGATGATTAAGCATGGAAAAGGAAAGTCATTGTTTTCACTTTTC
415137 AACTATAATAAGATTGGTTTGGATT
128 AACTATAATAAGATTGGTTTGGATT
415162 TTGTGTAGTCTTATTATGCAAATTGATGGCCAAAATCTTATGCATCATACA-C-GGCATGGCATG
1 TTGTGTAGTCTTATTATGCAAATTGATGGCCAAAATCTTATGCATCATACAGCAGGCATGGCATG
415225 GCATGGCATGACTGAATGGGATGATTAAGCATGGAAAAGGAAAGTCATTGTTTTCACTTTTCAAC
66 GCATGGCATGACTGAATGGGATGATTAAGCATGGAAAAGGAAAGTCATTGTTTTCACTTTTCAAC
415290 TATAATAAGATTGGTTTGGAT
131 TATAATAAGATTGGTTTGGAT
415311 CTCCTACATC
Statistics
Matches: 149, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
150 97 0.65
152 1 0.01
155 51 0.34
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (152 bp):
TTGTGTAGTCTTATTATGCAAATTGATGGCCAAAATCTTATGCATCATACAGCAGGCATGGCATG
GCATGGCATGACTGAATGGGATGATTAAGCATGGAAAAGGAAAGTCATTGTTTTCACTTTTCAAC
TATAATAAGATTGGTTTGGATT
Found at i:416958 original size:154 final size:148
Alignment explanation
Indices: 416678--416980 Score: 446
Period size: 154 Copynumber: 2.0 Consensus size: 148
416668 GACATTAATC
* *
416678 AGGCAGCCTAAAAACCATTTGGCAACCAAACCAAAACATGAACAATCAAAGAGGCCTAGCAATAA
1 AGGCAGCCTAAAAACCATTTGACAACCAAACCAAAACATGAACAATCAAAGAGGCCTAGCAACAA
** * * *
416743 CCCGAATATGTTAATTCAAACCCCATCAGATTTGACTTTATATAGCCTACTGTTATCAAGAATAA
66 CCCGAATATGTTAAGCCAAACCCCATCAGATTCGACTTTATATAGCATACTCTTATCAAGAATAA
416808 GAATAAATTTTCATTTAA
131 GAATAAATTTTCATTTAA
*
416826 AGGCAGCCTAAATACCA-TTGACAACCAAACCAAAACATGGAACTTAGTTGATCAAAGAGGCCTA
1 AGGCAGCCTAAAAACCATTTGACAACCAAACCAAAACAT-GAAC--A----ATCAAAGAGGCCTA
*
416890 GCAACAACCCGAATATGTTAAGCCAAACCCCATCAGATTCGACTTTATATAGCATATTCTTATCA
59 GCAACAACCCGAATATGTTAAGCCAAACCCCATCAGATTCGACTTTATATAGCATACTCTTATCA
*
416955 AGAATAAGAATAATTTTTCATTTAA
124 AGAATAAGAATAAATTTTCATTTAA
416980 A
1 A
416981 CCAAAGAAAC
Statistics
Matches: 138, Mismatches: 10, Indels: 8
0.88 0.06 0.05
Matches are distributed among these distances:
147 20 0.14
148 20 0.14
150 1 0.01
154 97 0.70
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.25
Consensus pattern (148 bp):
AGGCAGCCTAAAAACCATTTGACAACCAAACCAAAACATGAACAATCAAAGAGGCCTAGCAACAA
CCCGAATATGTTAAGCCAAACCCCATCAGATTCGACTTTATATAGCATACTCTTATCAAGAATAA
GAATAAATTTTCATTTAA
Found at i:421652 original size:18 final size:20
Alignment explanation
Indices: 421621--421666 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
421611 TAAAAAACAA
*
421621 ATTTTAGAATTTTTATAAA-T
1 ATTTT-GAATTTTTAAAAATT
421641 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
421660 ATTTTGA
1 ATTTTGA
421667 TTATTTTGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 8 0.33
19 11 0.46
20 5 0.21
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (20 bp):
ATTTTGAATTTTTAAAAATT
Found at i:426150 original size:8 final size:9
Alignment explanation
Indices: 426130--426177 Score: 87
Period size: 9 Copynumber: 5.3 Consensus size: 9
426120 TTATTAATTT
*
426130 AAAACTTTA
1 AAAATTTTA
426139 AAAATTTTA
1 AAAATTTTA
426148 AAAATTTTA
1 AAAATTTTA
426157 AAAATTTTA
1 AAAATTTTA
426166 AAAATTTTA
1 AAAATTTTA
426175 AAA
1 AAA
426178 GGTGTAAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (9 bp):
AAAATTTTA
Found at i:426185 original size:18 final size:18
Alignment explanation
Indices: 426130--426185 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
426120 TTATTAATTT
* * *
426130 AAAACTTTAAAAATTTTA
1 AAAATTTTAAAAAGTGTA
* *
426148 AAAATTTTAAAAATTTTA
1 AAAATTTTAAAAAGTGTA
*
426166 AAAATTTTAAAAGGTGTA
1 AAAATTTTAAAAAGTGTA
426184 AA
1 AA
426186 TAAAAAATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTTTAAAAAGTGTA
Found at i:426185 original size:27 final size:27
Alignment explanation
Indices: 426130--426185 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
426120 TTATTAATTT
* *
426130 AAAACTTTAAAAATTTTAAAAATTTTA
1 AAAACTTTAAAAATTTTAAAAAGTGTA
* *
426157 AAAATTTTAAAAATTTTAAAAGGTGTA
1 AAAACTTTAAAAATTTTAAAAAGTGTA
426184 AA
1 AA
426186 TAAAAAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (27 bp):
AAAACTTTAAAAATTTTAAAAAGTGTA
Found at i:431173 original size:23 final size:23
Alignment explanation
Indices: 431147--431190 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
431137 TAGTTTTATT
* *
431147 AAATTTGATTATGTTTAAATTCA
1 AAATTTCATTATATTTAAATTCA
*
431170 AAATTTCATTTTATTTAAATT
1 AAATTTCATTATATTTAAATT
431191 ATTTGAGTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.52
Consensus pattern (23 bp):
AAATTTCATTATATTTAAATTCA
Found at i:432520 original size:26 final size:25
Alignment explanation
Indices: 432490--432542 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 25
432480 GAATTTTAGT
*
432490 TTATTTTTAATTTTATTTTTAATA-AA
1 TTATTTTT-A-TTGATTTTTAATATAA
432516 TTATTTTTATTGATTTTTAATATAA
1 TTATTTTTATTGATTTTTAATATAA
432541 TT
1 TT
432543 TTTAGATTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 12 0.48
25 5 0.20
26 8 0.32
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (25 bp):
TTATTTTTATTGATTTTTAATATAA
Found at i:432521 original size:14 final size:12
Alignment explanation
Indices: 432490--432546 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
432480 GAATTTTAGT
*
432490 TTATTTTTAATT
1 TTATTTTTAATA
432502 TTATTTTTAATAAA
1 TTATTTTTAAT--A
432516 TTATTTTT-AT-
1 TTATTTTTAATA
*
432526 TGATTTTTAATA
1 TTATTTTTAATA
*
432538 TAATTTTTA
1 TTATTTTTA
432547 GATTGTGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
10 7 0.18
11 2 0.05
12 19 0.50
13 2 0.05
14 8 0.21
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (12 bp):
TTATTTTTAATA
Found at i:432551 original size:24 final size:24
Alignment explanation
Indices: 432504--432551 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
432494 TTTTAATTTT
**
432504 ATTTTTAATAAATTATTTTTATTG
1 ATTTTTAATAAATTATTTAGATTG
432528 ATTTTTAATATAATT-TTTAGATTG
1 ATTTTTAATA-AATTATTTAGATTG
432552 TGATATTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.60
Consensus pattern (24 bp):
ATTTTTAATAAATTATTTAGATTG
Found at i:432924 original size:30 final size:30
Alignment explanation
Indices: 432890--432959 Score: 124
Period size: 30 Copynumber: 2.4 Consensus size: 30
432880 TCTTCTATTT
*
432890 TTTTCATAGTTCTCTAGTTTTCTTCTTCTA
1 TTTTCATAGTTCTCTAGTTTTATTCTTCTA
432920 TTTTCATAGTTCTCTAGTTTTATTCTTCTA
1 TTTTCATAGTTCTCTAGTTTTATTCTTCTA
432950 TTTTCA-AGTT
1 TTTTCATAGTT
432960 ACATCCACAT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
29 4 0.10
30 35 0.90
ACGTcount: A:0.16, C:0.17, G:0.07, T:0.60
Consensus pattern (30 bp):
TTTTCATAGTTCTCTAGTTTTATTCTTCTA
Found at i:433883 original size:19 final size:20
Alignment explanation
Indices: 433846--433883 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
433836 CCCAAATTCA
433846 AAATGACCCAAACTAAGCCT
1 AAATGACCCAAACTAAGCCT
*
433866 AAATGGCCCAAA-TAAGCC
1 AAATGACCCAAACTAAGCC
433884 CAAACCAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.45, C:0.29, G:0.13, T:0.13
Consensus pattern (20 bp):
AAATGACCCAAACTAAGCCT
Found at i:435529 original size:29 final size:29
Alignment explanation
Indices: 435479--435878 Score: 305
Period size: 29 Copynumber: 13.8 Consensus size: 29
435469 GGAGGTCTCG
* *
435479 AAACTTCCAAAAATTCCGTTTTTACCCCC
1 AAACTTCCAAAAATCCCATTTTTACCCCC
* * * *
435508 AAACTTTCAAATATCCCATTTTTAACCTCA
1 AAACTTCCAAAAATCCCATTTTT-ACCCCC
* *
435538 AAACTTTCAAAAAAT-CTATTTTTACCCCC
1 AAAC-TTCCAAAAATCCCATTTTTACCCCC
* * * *
435567 GAACTTCCAAAAATCCCATCTTTGACACCA
1 AAACTTCCAAAAATCCCAT-TTTTACCCCC
*
435597 AAACTTCCAAAAATTCCA-TTTTACCCCC
1 AAACTTCCAAAAATCCCATTTTTACCCCC
* *
435625 AAACTTCC-AAAATCCCATCTTTGACCCCG
1 AAACTTCCAAAAATCCCAT-TTTTACCCCC
** **
435654 AAACTTCCAAAAAAT-TTATTTTTACCCTT
1 AAACTTCC-AAAAATCCCATTTTTACCCCC
* * *
435683 GAACATCCAAAAATCCCATTTTTGACCCCG
1 AAACTTCCAAAAATCCCATTTTT-ACCCCC
* *
435713 AAACTTCCAAAAATTCTA-TTTTACCCCC
1 AAACTTCCAAAAATCCCATTTTTACCCCC
* *
435741 GAACTTCCAAAAAATCCCATTTTTAACCCCG
1 AAACTTCC-AAAAATCCCATTTTT-ACCCCC
* * *
435772 AAACTTTC-AAAATTCTATTTTTA--CCC
1 AAACTTCCAAAAATCCCATTTTTACCCCC
* * * *
435798 GAACTTCCAAAAATGCCATTTTTCACCTCG
1 AAACTTCCAAAAATCCCATTTTT-ACCCCC
* ** *
435828 AAACTTCTAAAAATTTCATTTTTACCCTC
1 AAACTTCCAAAAATCCCATTTTTACCCCC
*
435857 GAACTTCC-AAAATCTCCATTTT
1 AAACTTCCAAAAATC-CCATTTT
435879 CGACCTCGAA
Statistics
Matches: 285, Mismatches: 68, Indels: 36
0.73 0.17 0.09
Matches are distributed among these distances:
26 8 0.03
27 20 0.07
28 49 0.17
29 103 0.36
30 82 0.29
31 23 0.08
ACGTcount: A:0.34, C:0.30, G:0.04, T:0.32
Consensus pattern (29 bp):
AAACTTCCAAAAATCCCATTTTTACCCCC
Found at i:435572 original size:59 final size:59
Alignment explanation
Indices: 435477--435947 Score: 489
Period size: 59 Copynumber: 8.1 Consensus size: 59
435467 TTGGAGGTCT
** * * * * *
435477 CGAAACTTCCAAAAATTCCGTTTTTACCCCCAAACTTTCAAATATCCCATTTTTAACCT
1 CGAAACTTCCAAAAATTCTATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCC
* * * * *
435536 CAAAACTTTCAAAAAATCTATTTTTACCCCCGAACTTCCAAAAATCCCATCTTTGACAC
1 CGAAACTTCCAAAAATTCTATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCC
* * * *
435595 CAAAACTTCCAAAAATTCCA-TTTTACCCCCAAACTTCC-AAAATCCCATCTTTGACCC
1 CGAAACTTCCAAAAATTCTATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCC
** *
435652 CGAAACTTCCAAAAAATT-TATTTTTACCCTTGAACATCCAAAAATCCCATTTTTGACCC
1 CGAAACTTCC-AAAAATTCTATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCC
*
435711 CGAAACTTCCAAAAATTCTA-TTTTACCCCCGAACTTCCAAAAAATCCCATTTTTAACCC
1 CGAAACTTCCAAAAATTCTATTTTTACCCCCGAACTTCC-AAAAATCCCATTTTTGACCC
* * * *
435770 CGAAACTTTC-AAAATTCTATTTTTA--CCCGAACTTCCAAAAATGCCATTTTTCACCT
1 CGAAACTTCCAAAAATTCTATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCC
* * * *
435826 CGAAACTTCTAAAAATT-TCATTTTTACCCTCGAACTTCC-AAAATCTCCATTTTCGACCT
1 CGAAACTTCCAAAAATTCT-ATTTTTACCCCCGAACTTCCAAAAATC-CCATTTTTGACCC
* ** * * *
435885 CGAAAC-TCTCAAAATTTC-CCTTTTACCCCCGAA-TGTCTAAAAATTCCATTTTTATACCC
1 CGAAACTTC-CAAAAATTCTATTTTTACCCCCGAACT-TCCAAAAATCCCATTTTT-GACCC
435944 CGAA
1 CGAA
435948 TTTTCCCAAA
Statistics
Matches: 348, Mismatches: 48, Indels: 32
0.81 0.11 0.07
Matches are distributed among these distances:
56 26 0.07
57 53 0.15
58 97 0.28
59 172 0.49
ACGTcount: A:0.34, C:0.30, G:0.04, T:0.32
Consensus pattern (59 bp):
CGAAACTTCCAAAAATTCTATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCC
Found at i:435692 original size:116 final size:113
Alignment explanation
Indices: 435477--435898 Score: 497
Period size: 116 Copynumber: 3.6 Consensus size: 113
435467 TTGGAGGTCT
* * * *
435477 CGAAACTTCCAAAAATTCCGTTTTTACCCCCAAACTTTCAAATATCCCATTTTTAACCTCAAAAC
1 CGAAACTTCCAAAAATTCC-ATTTTACCCCCAAACTTCCAAA-ATCCCATTTTTAACCCCGAAAC
* *
435542 TTTCAAAAAATCTATTTTTACCCCCGAACTTCCAAAAATCCCATCTTTGACAC
64 TTTCAAAAAATTTATTTTTA--CCCGAACTTCCAAAAATCCCATTTTTGAC-C
* * *
435595 CAAAACTTCCAAAAATTCCATTTTACCCCCAAACTTCCAAAATCCCATCTTTGACCCCGAAACTT
1 CGAAACTTCCAAAAATTCCATTTTACCCCCAAACTTCCAAAATCCCATTTTTAACCCCGAAACTT
* *
435660 CCAAAAAATTTATTTTTACCCTTGAACATCCAAAAATCCCATTTTTGACCC
66 TCAAAAAATTTATTTTTACCC--GAACTTCCAAAAATCCCATTTTTGA-CC
* *
435711 CGAAACTTCCAAAAATTCTATTTTACCCCCGAACTTCCAAAAAATCCCATTTTTAACCCCGAAAC
1 CGAAACTTCCAAAAATTCCATTTTACCCCCAAACTTCC--AAAATCCCATTTTTAACCCCGAAAC
* *
435776 TTTC--AAAATTCTATTTTTACCCGAACTTCCAAAAATGCCATTTTTCACC
64 TTTCAAAAAATT-TATTTTTACCCGAACTTCCAAAAATCCCATTTTTGACC
* * * * ** *
435825 TCGAAACTTCTAAAAATTTCATTTTTACCCTCGAACTTCCAAAATCTCCATTTTCGACCTCGAAA
1 -CGAAACTTCCAAAAATTCCA-TTTTACCCCCAAACTTCCAAAATC-CCATTTTTAACCCCGAAA
*
435890 CTCTCAAAA
63 CTTTCAAAA
435899 TTTCCCTTTT
Statistics
Matches: 265, Mismatches: 28, Indels: 23
0.84 0.09 0.07
Matches are distributed among these distances:
114 11 0.04
115 58 0.22
116 118 0.45
117 34 0.13
118 44 0.17
ACGTcount: A:0.35, C:0.30, G:0.04, T:0.31
Consensus pattern (113 bp):
CGAAACTTCCAAAAATTCCATTTTACCCCCAAACTTCCAAAATCCCATTTTTAACCCCGAAACTT
TCAAAAAATTTATTTTTACCCGAACTTCCAAAAATCCCATTTTTGACC
Found at i:435937 original size:29 final size:29
Alignment explanation
Indices: 435480--435947 Score: 232
Period size: 29 Copynumber: 16.1 Consensus size: 29
435470 GAGGTCTCGA
* * *
435480 AACTTCCAAAAATTCCGTTTTTACCCCCA
1 AACTTCTAAAAATTCCATTTTTACCCCCG
* * * **
435509 AACTT-TCAAATATCCCATTTTTAACCTCAA
1 AACTTCT-AAAAATTCCATTTTT-ACCCCCG
* *
435539 AACTT-TCAAAAAATCTATTTTTACCCCCG
1 AACTTCT-AAAAATTCCATTTTTACCCCCG
* * * * **
435568 AACTTCCAAAAATCCCATCTTTGACACCAA
1 AACTTCTAAAAATTCCAT-TTTTACCCCCG
* *
435598 AACTTCCAAAAATTCCA-TTTTACCCCCA
1 AACTTCTAAAAATTCCATTTTTACCCCCG
* * *
435626 AACTTC-CAAAATCCCATCTTTGA-CCCCG
1 AACTTCTAAAAATTCCAT-TTTTACCCCCG
* * **
435654 AAACTTCCAAAAAATT-TATTTTTACCCTTG
1 -AACTT-CTAAAAATTCCATTTTTACCCCCG
* * *
435684 AACATCCAAAAATCCCATTTTTGA-CCCCG
1 AACTTCTAAAAATTCCATTTTT-ACCCCCG
* *
435713 AAACTTCCAAAAATTCTA-TTTTACCCCCG
1 -AACTTCTAAAAATTCCATTTTTACCCCCG
* * *
435742 AACTTCCAAAAAATCCCATTTTTAACCCCG
1 AACTT-CTAAAAATTCCATTTTTACCCCCG
* *
435772 AAACTT-TCAAAATTCTATTTTTA--CCCG
1 -AACTTCTAAAAATTCCATTTTTACCCCCG
* * *
435799 AACTTCCAAAAATGCCATTTTT-CACCTCG
1 AACTTCTAAAAATTCCATTTTTAC-CCCCG
* *
435828 AAACTTCTAAAAATTTCATTTTTACCCTCG
1 -AACTTCTAAAAATTCCATTTTTACCCCCG
* * *
435858 AACTTC-CAAAATCTCCATTTTCGA-CCTCG
1 AACTTCTAAAAAT-TCCATTTT-TACCCCCG
* *
435887 AAAC-TCTCAAAATTTCC-CTTTTACCCCCG
1 -AACTTCT-AAAAATTCCATTTTTACCCCCG
*
435916 AA-TGTCTAAAAATTCCATTTTTATACCCCG
1 AACT-TCTAAAAATTCCATTTTTA-CCCCCG
435946 AA
1 AA
435948 TTTTCCCAAA
Statistics
Matches: 335, Mismatches: 71, Indels: 65
0.71 0.15 0.14
Matches are distributed among these distances:
26 5 0.01
27 24 0.07
28 47 0.14
29 129 0.39
30 115 0.34
31 15 0.04
ACGTcount: A:0.34, C:0.30, G:0.04, T:0.32
Consensus pattern (29 bp):
AACTTCTAAAAATTCCATTTTTACCCCCG
Found at i:436376 original size:96 final size:96
Alignment explanation
Indices: 436211--436402 Score: 233
Period size: 96 Copynumber: 2.0 Consensus size: 96
436201 AAAGCTTTAA
** * * * **
436211 AATCGAGACAATATTTTTTTATTTCGAGTTTTGAAATTTTGTGCCTTAACTCAATAGGTGCAATT
1 AATCGAGACAATATTTCCTTATTTCGAGTTCTGAAATATTGCGCCTTAACTCAATAGGTGCAACC
436276 TTTCTTCAAATCGAAATAATCAAATACCCTT
66 TTTCTTCAAATCGAAATAATCAAATACCCTT
* * * *
436307 AATCGAGACAATGTTTCCTTATCTTCGA-TTCTGAAATATTGCGCTTTAACTTACTAGGTGCAAC
1 AATCGAGACAATATTTCCTTAT-TTCGAGTTCTGAAATATTGCGCCTTAACTCAATAGGTGCAAC
* * * *
436371 CTTTCTTTAAATCGAGATAATCGAATATCCTT
65 CTTTCTTCAAATCGAAATAATCAAATACCCTT
436403 TTCGCAAAAA
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
96 75 0.94
97 5 0.06
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (96 bp):
AATCGAGACAATATTTCCTTATTTCGAGTTCTGAAATATTGCGCCTTAACTCAATAGGTGCAACC
TTTCTTCAAATCGAAATAATCAAATACCCTT
Found at i:444807 original size:13 final size:12
Alignment explanation
Indices: 444780--444806 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
444770 GAAAAATTGC
444780 AAATGAAAAAAA
1 AAATGAAAAAAA
444792 AAATGAAAAAAA
1 AAATGAAAAAAA
444804 AAA
1 AAA
444807 AAAAATTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.07, T:0.07
Consensus pattern (12 bp):
AAATGAAAAAAA
Found at i:461458 original size:21 final size:21
Alignment explanation
Indices: 461432--461516 Score: 63
Period size: 21 Copynumber: 4.2 Consensus size: 21
461422 TAGCAGACTT
461432 TGTGCCGGTGTATTCGGGCTA
1 TGTGCCGGTGTATTCGGGCTA
* * *
461453 TGTGCC----TA-GCAGGACTT
1 TGTGCCGGTGTATTC-GGGCTA
* ** *
461470 TGTGCCGGTTTATTCAAGCTT
1 TGTGCCGGTGTATTCGGGCTA
461491 TGTGCCGGTGTATTCGGGCTA
1 TGTGCCGGTGTATTCGGGCTA
461512 TGTGC
1 TGTGC
461517 TTAGCAAGCC
Statistics
Matches: 47, Mismatches: 11, Indels: 12
0.67 0.16 0.17
Matches are distributed among these distances:
16 1 0.02
17 12 0.26
21 33 0.70
22 1 0.02
ACGTcount: A:0.12, C:0.20, G:0.33, T:0.35
Consensus pattern (21 bp):
TGTGCCGGTGTATTCGGGCTA
Found at i:461463 original size:37 final size:38
Alignment explanation
Indices: 461408--461484 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 38
461398 ATCTAAGAAC
*
461408 TCGGGCTATGTGCTTAGCA-GACTTTGTGCCGGTGTAT
1 TCGGGCTATGTGCCTAGCAGGACTTTGTGCCGGTGTAT
*
461445 TCGGGCTATGTGCCTAGCAGGACTTTGTGCCGGTTTAT
1 TCGGGCTATGTGCCTAGCAGGACTTTGTGCCGGTGTAT
461483 TC
1 TC
461485 AAGCTTTGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
37 18 0.49
38 19 0.51
ACGTcount: A:0.13, C:0.21, G:0.31, T:0.35
Consensus pattern (38 bp):
TCGGGCTATGTGCCTAGCAGGACTTTGTGCCGGTGTAT
Found at i:461495 original size:38 final size:37
Alignment explanation
Indices: 461412--461496 Score: 116
Period size: 38 Copynumber: 2.3 Consensus size: 37
461402 AAGAACTCGG
* **
461412 GCTATGTGCTTAGCAGACTTTGTGCCGGTGTATTCGG
1 GCTATGTGCCTAGCAGACTTTGTGCCGGTGTATTCAA
*
461449 GCTATGTGCCTAGCAGGACTTTGTGCCGGTTTATTCAA
1 GCTATGTGCCTAGCA-GACTTTGTGCCGGTGTATTCAA
*
461487 GCTTTGTGCC
1 GCTATGTGCC
461497 GGTGTATTCG
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 14 0.33
38 28 0.67
ACGTcount: A:0.14, C:0.21, G:0.29, T:0.35
Consensus pattern (37 bp):
GCTATGTGCCTAGCAGACTTTGTGCCGGTGTATTCAA
Found at i:461503 original size:59 final size:58
Alignment explanation
Indices: 461429--461545 Score: 180
Period size: 59 Copynumber: 2.0 Consensus size: 58
461419 GCTTAGCAGA
* * *
461429 CTTTGTGCCGGTGTATTCGGGCTATGTGCCTAGCAGGACTTTGTGCCGGTTTATTCAAG
1 CTTTGTGCCGGTGTATTCGGGCTATGTGCCTAGCAAGACTTTATGCCGG-TGATTCAAG
* *
461488 CTTTGTGCCGGTGTATTCGGGCTATGTGCTTAGCAAGCCTTTATGCCGGTGATTCAAG
1 CTTTGTGCCGGTGTATTCGGGCTATGTGCCTAGCAAGACTTTATGCCGGTGATTCAAG
461546 AGTGAGTATT
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 8 0.15
59 45 0.85
ACGTcount: A:0.15, C:0.21, G:0.30, T:0.35
Consensus pattern (58 bp):
CTTTGTGCCGGTGTATTCGGGCTATGTGCCTAGCAAGACTTTATGCCGGTGATTCAAG
Found at i:463670 original size:22 final size:22
Alignment explanation
Indices: 463642--463762 Score: 188
Period size: 22 Copynumber: 5.5 Consensus size: 22
463632 GAATGCTAGC
463642 GTGCTTCTGTTCAGCACTGTGT
1 GTGCTTCTGTTCAGCACTGTGT
*
463664 GTGCTTCTGTTCAGCACTATGT
1 GTGCTTCTGTTCAGCACTGTGT
* *
463686 GTGCTTTTGTTCAGTACTGTGT
1 GTGCTTCTGTTCAGCACTGTGT
* *
463708 GTGCTTCTGTTCAACACTATGT
1 GTGCTTCTGTTCAGCACTGTGT
*
463730 GTGCTTCTGTTCAGCACTGTAT
1 GTGCTTCTGTTCAGCACTGTGT
463752 GTGCTTCTGTT
1 GTGCTTCTGTT
463763 TCCCCAGCAC
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 88 1.00
ACGTcount: A:0.12, C:0.21, G:0.24, T:0.44
Consensus pattern (22 bp):
GTGCTTCTGTTCAGCACTGTGT
Found at i:464928 original size:12 final size:12
Alignment explanation
Indices: 464911--464942 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
464901 TCGTAGACGT
464911 ACACGAGCTAGC
1 ACACGAGCTAGC
464923 ACACGAGCTAGC
1 ACACGAGCTAGC
464935 ACACGAGC
1 ACACGAGC
464943 ATGTGCCCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.34, G:0.25, T:0.06
Consensus pattern (12 bp):
ACACGAGCTAGC
Found at i:470901 original size:23 final size:23
Alignment explanation
Indices: 470871--470989 Score: 114
Period size: 23 Copynumber: 5.2 Consensus size: 23
470861 ACATTAGCAC
*
470871 GCTTACTG-TTCAGCACTGTGTGT
1 GCTTACTGATTC-GCACTATGTGT
* *
470894 GCTTACTGATTCGCACTATATCT
1 GCTTACTGATTCGCACTATGTGT
* *
470917 GCTTATTGATTTGCACTATGTGT
1 GCTTACTGATTCGCACTATGTGT
* * **
470940 GCTTACTGTTTGGCACTGCGTGT
1 GCTTACTGATTCGCACTATGTGT
* * *
470963 GCCTACTGATTTGCACTATATGT
1 GCTTACTGATTCGCACTATGTGT
470986 GCTT
1 GCTT
470990 CCTGTTTCCC
Statistics
Matches: 76, Mismatches: 19, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
23 73 0.96
24 3 0.04
ACGTcount: A:0.16, C:0.21, G:0.22, T:0.41
Consensus pattern (23 bp):
GCTTACTGATTCGCACTATGTGT
Found at i:476312 original size:228 final size:225
Alignment explanation
Indices: 475294--476386 Score: 911
Period size: 228 Copynumber: 4.8 Consensus size: 225
475284 CAACTGCTTC
* * * * *
475294 CCAGCAAAGATCAACCTCTGCTGGTCTGG-AGGAATCCCCTCGTTATCCTGAATCTTCGCTTTCA
1 CCAGCAAAAATCAACCTCTGCTGGTCTGGTAGG-ATACCCTCCTTGTCCTGAATCTTCGCTTTAA
* ** * ** * * *
475358 CATTGTCGATCGTATCCTAGCTCTCCACCTCCGGGGTGATGGTTTTACCGGTCAAGGTCTTCACG
65 CATTGTCAATCGTATCAGAACTCTCCACCTCCAAGGTAATAGTTTT-CCGGTCAA-GTCTTCACA
* * * * * * *
475423 AATATCTGCATCCCTCCTCGAAGTCGTAAAACCAGATGCAGGGTCGATTCCTTTTGGATGTTATA
128 AATATCTGCATCCCACCACGAAGACGTAACACCAAATGGAGGGTCGATTCCTTCTGGATGTTATA
* *
475488 GTCTGCAAGTGTCCTCCCATCCTCAAGCTGCTTT
193 GTCTGCAAGTGTCCTACCATCTTCAAGCTG-TTT
* *
475522 CCAGCAAAAATCAACCTCTGCTGGTCTGG-AGGAATCCCCTCCTTGTCCTGAATTTTCGCTTTAA
1 CCAGCAAAAATCAACCTCTGCTGGTCTGGTAGG-ATACCCTCCTTGTCCTGAATCTTCGCTTTAA
* * * * * * * *
475586 CATTGTCAATGGT-GCCGAACTCTCGACCTCCAGGGTGATGGTTTTACCAGTCAAGGTCTTCACA
65 CATTGTCAATCGTATCAGAACTCTCCACCTCCAAGGTAATAGTTTT-CCGGTCAA-GTCTTCACA
* * * * * * *
475650 AATATCTGCATCCCTCCTCGAAG-CTGCAAAACCAAATGCAAGGTCGATTCCTTTTGGATGTTAT
128 AATATCTGCATCCCACCACGAAGAC-GTAACACCAAATGGAGGGTCGATTCCTTCTGGATGTTAT
* * * * *
475714 AATCTGCAAGTGCCCTCCCATCCTCGAGCTGATTT
192 AGTCTGCAAGTGTCCTACCATCTTCAAGCTG-TTT
* * * * * * * *
475749 CCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATACCCTCCTTATCTTGGATCTTGGCCTTCAC
1 CCAGCAAAAATCAACCTCTGCTGGTCTGGTAGGATACCCTCCTTGTCCTGAATCTTCGCTTTAAC
* * * * * * * *
475814 ATTATCAATTGTGTCTGAGCTCTCCACCTCCAATGTAATAGTTCTTCCAGTCAAAGTTTTCACAA
66 ATTGTCAATCGTATCAGAACTCTCCACCTCCAAGGTAATAGTT-TTCCGGTC-AAGTCTTCACAA
* * * * * *** * * * * * * *
475879 AAATTTGCATTCCACCACGCAGTCGGCGCACCAAGTGGAGGGTAGACTCTTTCTGAATATTATAA
129 ATATCTGCATCCCACCACGAAGACGTAACACCAAATGGAGGGTCGATTCCTTCTGGATGTTATAG
*
475944 TCTGCAAGTGTCCTACCATCTTCGAGCTGTTT
194 TCTGCAAGTGTCCTACCATCTTCAAGCTGTTT
* * * * * * * *
475976 GCCAGCAAAAATTAACCTCTGTTGATCTGGTTGAAT-CCCTTCCTTGTCCTGGATCTTAGCTTTT
1 -CCAGCAAAAATCAACCTCTGCTGGTCTGGTAGGATACCC-TCCTTGTCCTGAATCTTCGCTTTA
* * * * * * *
476040 ACATTGTCGATGGTGTCAGAACTCTCAACTTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCAC
64 ACATTGTCAATCGTATCAGAACTCTCCACCTCCAAGGTAATAGT-TTTCCGGTCA-AGTCTTCAC
* * * ** *
476105 AAAAATTTGCATGCCACCACGGGGACGTAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTAT
127 AAATATCTGCATCCCACCACGAAGACGTAACACCAAATGGAGGGTCGATTCCTTCTGGATGTTAT
* * * **
476170 AGTCCGCAAGAGTTCGGCCATCTTCAAGCTGTTT
192 AGTCTGCAAGTGTCCTACCATCTTCAAGCTGTTT
* * * * *
476204 CCCAGCAAAGATTAACCTCTGCTGGTCCGGTCGGATACCCTCCTTGTCCTGAATCTTCGCCTTAA
1 -CCAGCAAAAATCAACCTCTGCTGGTCTGGTAGGATACCCTCCTTGTCCTGAATCTTCGCTTTAA
* * * * * *
476269 CA-TGATCAATCGTATCAGAACTCTCCACCTCTAATGTAATAGTCTTTCCGGTGAGAGTTTTTAT
65 CATTG-TCAATCGTATCAGAACTCTCCACCTCCAAGGTAATAGT-TTTCCGGTCA-AGTCTTCAC
* ** *
476333 AAATATCTGCATGCCACCACGGGGACGTAACACCAAATGGAGGGTCGACTCCTT
127 AAATATCTGCATCCCACCACGAAGACGTAACACCAAATGGAGGGTCGATTCCTT
476387 GTCTGACTTA
Statistics
Matches: 724, Mismatches: 129, Indels: 24
0.83 0.15 0.03
Matches are distributed among these distances:
226 1 0.00
227 205 0.28
228 509 0.70
229 9 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (225 bp):
CCAGCAAAAATCAACCTCTGCTGGTCTGGTAGGATACCCTCCTTGTCCTGAATCTTCGCTTTAAC
ATTGTCAATCGTATCAGAACTCTCCACCTCCAAGGTAATAGTTTTCCGGTCAAGTCTTCACAAAT
ATCTGCATCCCACCACGAAGACGTAACACCAAATGGAGGGTCGATTCCTTCTGGATGTTATAGTC
TGCAAGTGTCCTACCATCTTCAAGCTGTTT
Found at i:476376 original size:456 final size:457
Alignment explanation
Indices: 475276--476392 Score: 1020
Period size: 456 Copynumber: 2.5 Consensus size: 457
475266 TAGAGTTCGA
* * * * * * *
475276 CCATCCTCCAA-CTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGG-AGGAATCCCCTCGTTA
1 CCATCCT-CAAGCTGATTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTCGG-ATACCCTCCTTA
* * * ** * *** * *
475339 TCCTGAATCTTCGCTTTCACATTG-TCGATCGTATCCTAGCTCTCCACCTCCGGGGTGATGGTT-
64 TCCTGAATCTTCGCCTTAACA-TGATCAATCGTATCAGAACTCTCCACCTCCAATGTAATAGTTC
* * * * * * * * * * * * * *
475402 TTACCGGTCAAGGTCTTCACGAATATCTGCATCCCTCCTCGAAGTCGTAAAACCAGATGCAGGGT
128 TT-CCAGTCAAAGTTTTCACAAAAATCTGCATGCCACCACGCAGACGGAACACCAAATGGAGGGT
* * * * * *
475467 CGATTCCTT-T-TGGATGTTATAGTCTGCAAGTGTCCTCCCATCCTCAAGCTGCTTTCCAGCAAA
192 AGACTCCTTGTCTGAATATTATAATCTGCAAGTGTCCTACCATCCTCAAGCTGCTTTCCAGCAAA
* * *
475530 AATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATTTTCGCTTTAACATTGTCAA
257 AATCAACCTCTGCTGATCTGGAGGAATCCCCTCCTTGTCCTGAATCTTAGCTTTAACATTGTCAA
* * ** * * *
475595 TGGTGCCGAACTCTCGACCTCCAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAATATCTGCA
322 TGGTGCAGAACTCTCAACCTCCAAAGTAATAGTTTTACCAGTCAAGGTCTTCACAAAAATCTGCA
* * * * * *
475660 TCCCTCCTCGAAGCTGCAAAACCAAATGCAAGGTCGATTCCTTTTGGATGTTATAATCTGCAAGT
387 TCCCACCACGAAGCTGCAAAACCAAATGCAAGGTCGATTCCTTCTGAATGTTATAATCCGCAAGA
*
475725 GCCCTC
452 GCCCGC
* *
475731 CCATCCTCGAGCTGATTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATACCCTCCTTATC
1 CCATCCTCAAGCTGATTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTCGGATACCCTCCTTATC
* * * * * * * * *
475796 TTGGATCTTGGCCTTCACATTATCAATTGTGTCTGAGCTCTCCACCTCCAATGTAATAGTTCTTC
66 CTGAATCTTCGCCTTAACATGATCAATCGTATCAGAACTCTCCACCTCCAATGTAATAGTTCTTC
* * * ** *
475861 CAGTCAAAGTTTTCACAAAAATTTGCATTCCACCACGCAGTCGGCGCACCAAGTGGAGGGTAGAC
131 CAGTCAAAGTTTTCACAAAAATCTGCATGCCACCACGCAGACGGAACACCAAATGGAGGGTAGAC
* *
475926 T-CTT-TCTGAATATTATAATCTGCAAGTGTCCTACCATCTTCGAGCTG-TTTGCCAGCAAAAAT
196 TCCTTGTCTGAATATTATAATCTGCAAGTGTCCTACCATCCTCAAGCTGCTTT-CCAGCAAAAAT
* * ** * * * *
475988 TAACCTCTGTTGATCTGGTTGAATCCCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCGATGG
260 CAACCTCTGCTGATCTGGAGGAATCCCCTCCTTGTCCTGAATCTTAGCTTTAACATTGTCAATGG
* * * *
476053 TGTCAGAACTCTCAACTTCCAAAGTAATAGTCTTT-CCGGT-GAGAGTCTTCACAAAAATTTGCA
325 TG-CAGAACTCTCAACCTCCAAAGTAATAGT-TTTACCAGTCAAG-GTCTTCACAAAAATCTGCA
* ** * * * * *
476116 TGCCACCACGGGGAC-GTAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAGTCCGCAAG
387 TCCCACCACGAAG-CTGCAAAACCAAATGCAAGGTCGATTCCTTCTGAATGTTATAATCCGCAAG
** *
476180 AGTTCGG
451 AGCCCGC
* * * * *
476187 CCATCTTCAAGCTG-TTTCCCAGCAAAGATTAACCTCTGCTGGTCCGGTCGGATACCCTCCTTGT
1 CCATCCTCAAGCTGATTT-CCAGCAAAAATCAACCTCTGCTGGTCAGGTCGGATACCCTCCTTAT
*
476251 CCTGAATCTTCGCCTTAACATGATCAATCGTATCAGAACTCTCCACCTCTAATGTAATAG-TCTT
65 CCTGAATCTTCGCCTTAACATGATCAATCGTATCAGAACTCTCCACCTCCAATGTAATAGTTC-T
* * * * * * ** * *
476315 TCCGGTGAGAGTTTTTATAAATATCTGCATGCCACCACGGGGACGTAACACCAAATGGAGGGTCG
129 TCCAGTCAAAGTTTTCACAAAAATCTGCATGCCACCACGCAGACGGAACACCAAATGGAGGGTAG
476380 ACTCCTTGTCTGA
194 ACTCCTTGTCTGA
476393 CTTAGGGCTA
Statistics
Matches: 527, Mismatches: 121, Indels: 25
0.78 0.18 0.04
Matches are distributed among these distances:
454 10 0.02
455 252 0.48
456 253 0.48
457 7 0.01
458 5 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (457 bp):
CCATCCTCAAGCTGATTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTCGGATACCCTCCTTATC
CTGAATCTTCGCCTTAACATGATCAATCGTATCAGAACTCTCCACCTCCAATGTAATAGTTCTTC
CAGTCAAAGTTTTCACAAAAATCTGCATGCCACCACGCAGACGGAACACCAAATGGAGGGTAGAC
TCCTTGTCTGAATATTATAATCTGCAAGTGTCCTACCATCCTCAAGCTGCTTTCCAGCAAAAATC
AACCTCTGCTGATCTGGAGGAATCCCCTCCTTGTCCTGAATCTTAGCTTTAACATTGTCAATGGT
GCAGAACTCTCAACCTCCAAAGTAATAGTTTTACCAGTCAAGGTCTTCACAAAAATCTGCATCCC
ACCACGAAGCTGCAAAACCAAATGCAAGGTCGATTCCTTCTGAATGTTATAATCCGCAAGAGCCC
GC
Found at i:477716 original size:3 final size:3
Alignment explanation
Indices: 477710--477743 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
477700 AATAATCCAA
477710 AAT AAT AAT AAT AAT AAT AAT AAT -AT AA- AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
477744 GTAAATTGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.14
3 25 0.86
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:479469 original size:23 final size:24
Alignment explanation
Indices: 479430--479481 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
479420 TAATAGGGAT
479430 TTTCAATTTACAATTCA-TATCAC
1 TTTCAATTTACAATTCATTATCAC
* *
479453 TTTCAA-TTCCAATTTCATTTTCAC
1 TTTCAATTTACAA-TTCATTATCAC
479477 TTTCA
1 TTTCA
479482 CTTTCACTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 5 0.20
23 10 0.40
24 10 0.40
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.48
Consensus pattern (24 bp):
TTTCAATTTACAATTCATTATCAC
Found at i:479474 original size:6 final size:6
Alignment explanation
Indices: 479449--479493 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
479439 ACAATTCATA
* * * *
479449 TCACTT TCAATT CCAATT TCATTT TCACTT TCACTT TCACTT TCA
1 TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCA
479494 ATTTTGATCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.22, C:0.29, G:0.00, T:0.49
Consensus pattern (6 bp):
TCACTT
Found at i:482563 original size:45 final size:45
Alignment explanation
Indices: 482514--482840 Score: 397
Period size: 45 Copynumber: 7.3 Consensus size: 45
482504 TGGTTTGTCT
* * * *
482514 TTCTTTGGAGGTGCATAAACTGGTGGTTTAGGTTCAGGCTTCTCC
1 TTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGCTTCTCC
* * * * *
482559 TTCTTTGGCGGT-TCATACACGGGTGGCTTGGGTTCAGGCTTCTCC
1 TTCTTTGGTGGTGT-ATAAACTGGTGGCTTAGGCTCAGGCTTCTCC
* * * * * *
482604 TTCTTTGGTGGT-TCATACATTGGTGGTTTGGGCTCGGGCTTCTCT
1 TTCTTTGGTGGTGT-ATAAACTGGTGGCTTAGGCTCAGGCTTCTCC
*
482649 TTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGCTTTTCC
1 TTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGCTTCTCC
* * * * * *
482694 TTCTTTGGAGGTTTATATACTGGTGGTTTGGGCTCAGGCTTCTCT
1 TTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGCTTCTCC
*
482739 TTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGCTTCTCT
1 TTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGCTTCTCC
*
482784 TTCTTTGGTGGTGTATAAACTGGTGGCTTAGGTTCAGGCTTCTCC
1 TTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGCTTCTCC
*
482829 TTCTTCGGTGGT
1 TTCTTTGGTGGT
482841 TCATAGATAG
Statistics
Matches: 245, Mismatches: 35, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
45 244 1.00
46 1 0.00
ACGTcount: A:0.11, C:0.18, G:0.30, T:0.41
Consensus pattern (45 bp):
TTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGCTTCTCC
Found at i:482719 original size:135 final size:135
Alignment explanation
Indices: 482511--482845 Score: 483
Period size: 135 Copynumber: 2.5 Consensus size: 135
482501 TTTTGGTTTG
* * * *
482511 TCTTTCTTTGGAGGTGCATAAACTGGTGGTTTAGGTTCAGGCTTCTCCTTCTTTGGCGGTTCATA
1 TCTTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGTTCAGGCTTCTCCTTCTTTGGAGGTTCATA
* * * * * *
482576 CACGGGTGGCTTGGGTTCAGGCTTCTCCTTCTTTGGTGGT-TCATACATTGGTGGTTTGGGCTCG
66 CACGGGTGGCTTGGGCTCAGGCTTCTCCTTCTTTGGTGGTGT-ATAAACTGGTGGCTTAGGCTCA
482640 GGCTTC
130 GGCTTC
* * *
482646 TCTTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAGGCTTTTCCTTCTTTGGAGGTTTATA
1 TCTTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGTTCAGGCTTCTCCTTCTTTGGAGGTTCATA
* * * *
482711 TACTGGTGGTTTGGGCTCAGGCTTCTCTTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAG
66 CACGGGTGGCTTGGGCTCAGGCTTCTCCTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAG
482776 GCTTC
131 GCTTC
* *
482781 TCTTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGTTCAGGCTTCTCCTTCTTCGGTGGTTCATA
1 TCTTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGTTCAGGCTTCTCCTTCTTTGGAGGTTCATA
482846 GATAGGAGGC
Statistics
Matches: 177, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
135 176 0.99
136 1 0.01
ACGTcount: A:0.12, C:0.19, G:0.29, T:0.41
Consensus pattern (135 bp):
TCTTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGTTCAGGCTTCTCCTTCTTTGGAGGTTCATA
CACGGGTGGCTTGGGCTCAGGCTTCTCCTTCTTTGGTGGTGTATAAACTGGTGGCTTAGGCTCAG
GCTTC
Done.