genome.fa.s15368.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015368.1 Kokia drynarioides strain JFW-HI SEQ_130415, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  216984

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64--98	17	2.1	17	88	0	52	25	8	17	48	1.75
1879--1947	25	2.7	24	78	10	66	68	1	1	28	1.07
1928--2041	30	3.9	31	73	16	91	58	0	4	35	1.24
1879--2000	9	13.7	9	71	18	78	64	0	2	31	1.12
1914--2001	10	9.4	10	73	14	55	62	0	2	35	1.08
1964--2120	61	2.6	59	76	16	160	60	2	7	29	1.36
2291--2335	20	2.2	20	84	7	56	28	0	6	64	1.19
2301--2355	21	2.7	20	80	8	56	36	0	3	60	1.15
3224--3271	24	2.0	24	100	0	96	58	16	8	16	1.61
5040--5089	6	8.2	6	91	4	73	50	0	50	0	1.00
6150--6187	18	2.1	18	85	9	51	26	5	13	55	1.59
20931--20994	31	2.1	31	87	0	92	28	12	7	51	1.67
23836--23875	21	1.9	21	85	10	55	30	17	17	35	1.93
33085--33118	14	2.3	15	90	5	52	14	32	0	52	1.42
34060--34136	29	2.6	29	87	6	102	44	1	0	54	1.08
34053--34144	28	3.2	29	86	6	107	47	1	0	51	1.07
35839--35959	23	5.3	22	82	5	100	39	23	23	12	1.89
36413--36443	10	2.9	11	90	9	55	19	9	6	64	1.45
43068--43111	23	2.0	23	81	4	54	36	27	22	13	1.92
46934--47104	22	7.5	22	84	8	180	11	22	22	42	1.86
46956--47103	22	6.5	22	86	9	206	10	24	23	41	1.85
46966--47103	47	2.9	47	95	0	240	10	24	23	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46956--47103	69	2.1	67	87	7	208	10	24	23	41	1.85
46966--47128	47	3.5	47	90	1	157	11	25	22	40	1.87
47598--47627	13	2.4	13	94	5	53	46	6	6	40	1.56
51097--51149	24	2.3	24	81	12	67	66	1	30	1	1.13
57852--57877	2	13.0	2	100	0	52	50	0	0	50	1.00
64088--64122	4	8.5	4	90	3	52	74	0	25	0	0.82
64089--64137	16	3.1	15	79	8	53	73	0	24	2	0.94
64158--64182	12	2.1	12	100	0	50	36	0	0	64	0.94
64973--65067	30	3.2	30	69	8	95	35	5	12	46	1.65
66130--66214	43	2.0	43	81	9	102	31	10	9	48	1.70
68357--68413	27	2.1	28	83	9	73	59	10	1	28	1.40
71364--71412	21	2.4	21	96	3	91	55	14	0	30	1.40
77170--77219	2	25.0	2	100	0	100	50	0	50	0	1.00
78903--78927	4	6.2	4	100	0	50	48	0	0	52	1.00
90524--90558	18	2.0	18	94	5	63	57	0	0	42	0.99
91443--91483	20	2.0	20	95	0	73	7	19	29	43	1.78
97266--97337	14	5.0	15	71	20	64	51	0	1	47	1.09
97312--97360	13	4.1	12	80	17	57	53	0	0	46	1.00
97321--97370	23	2.2	23	82	7	57	52	2	0	46	1.12
98577--98648	37	2.0	37	83	8	94	40	9	19	30	1.84
98594--98710	38	3.1	37	80	8	128	38	7	19	34	1.81
105519--105719	103	2.0	103	89	0	312	30	23	9	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107483--107585	49	2.1	50	92	3	172	32	7	10	49	1.66
109649--109673	2	12.5	2	100	0	50	52	0	0	48	1.00
120311--120345	17	2.1	17	100	0	70	17	22	11	48	1.79
122088--122211	23	5.3	23	75	5	106	10	20	23	45	1.81
127137--127449	29	10.8	29	81	6	301	37	1	23	38	1.65
127137--127449	88	3.6	88	78	5	224	37	1	23	38	1.65
130021--130059	19	2.1	19	85	9	53	41	5	2	51	1.38
130024--130070	18	2.5	20	75	6	53	40	4	2	53	1.32
132614--132653	20	2.0	20	85	0	53	25	5	7	62	1.42
133653--133797	57	2.6	56	75	6	132	28	15	13	42	1.85
134288--134546	56	4.4	58	68	9	175	34	14	14	36	1.87
134240--134486	116	2.1	115	85	9	324	36	14	15	33	1.87
136835--136879	21	2.2	21	84	7	58	31	0	2	66	1.04
137830--137929	29	3.4	28	80	12	94	42	11	10	37	1.74
138172--138220	21	2.4	22	83	10	59	20	16	20	42	1.89
145387--145465	26	3.2	25	63	30	60	51	15	17	15	1.76
145405--145498	22	4.0	22	74	17	100	46	17	17	19	1.84
145387--145492	49	2.1	50	91	6	171	50	15	17	16	1.78
147783--147829	11	4.0	12	83	13	62	48	2	0	48	1.13
147776--147829	17	3.1	17	86	2	72	48	1	0	50	1.11
147783--147829	6	8.0	6	84	13	62	48	2	0	48	1.13
147820--147858	14	2.7	15	84	7	55	58	17	5	17	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148499--148573	9	7.8	9	74	12	51	54	2	5	37	1.37
149544--149852	29	10.5	29	76	10	245	33	29	4	33	1.77
149544--149852	88	3.5	85	77	13	297	33	29	4	33	1.77
149544--149822	59	4.8	59	82	7	320	33	29	4	32	1.77
161820--162021	86	2.3	86	94	0	359	33	18	25	22	1.97
161853--162011	49	3.5	48	67	19	142	32	18	26	23	1.97
161687--162217	292	1.8	294	88	2	827	34	20	23	21	1.96
162546--162598	11	4.7	11	77	11	54	37	0	1	60	1.08
162546--162598	17	3.5	16	78	21	69	37	0	1	60	1.08
162556--162608	6	9.0	6	78	12	56	45	1	1	50	1.23
163300--163364	33	2.0	33	84	6	87	56	1	3	38	1.24
163333--163366	14	2.3	14	90	10	50	61	0	0	38	0.96
164359--164635	29	9.6	29	75	9	226	33	28	3	34	1.74
164346--164668	58	5.5	58	77	8	266	33	30	2	34	1.72
164359--164633	87	3.2	88	82	7	303	33	29	3	34	1.74
166688--166770	42	2.0	42	97	0	157	34	22	8	33	1.85
167407--167593	90	2.1	90	83	6	227	38	23	7	30	1.82
167421--167604	89	2.1	87	80	8	201	42	21	7	28	1.80
167649--167770	65	1.9	65	81	6	149	59	1	2	36	1.20
167689--167769	36	2.2	36	81	10	94	62	2	2	32	1.21
168045--168092	20	2.4	20	82	6	53	33	4	0	62	1.14
171054--171083	2	15.0	2	100	0	60	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182197--182285	44	2.0	45	82	2	108	67	3	19	10	1.34
186369--186399	6	5.2	6	96	0	53	29	0	67	3	1.06
190070--190107	19	2.0	19	100	0	76	31	5	15	47	1.68
203860--203892	2	16.5	2	100	0	66	48	0	0	51	1.00
207721--207800	36	2.2	36	86	0	106	22	25	15	37	1.93
210354--210407	19	2.9	18	78	5	63	31	7	1	59	1.36

Tables:   1

The End!