genome.fa.s15370.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015370.1 Kokia drynarioides strain JFW-HI SEQ_130417, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  443270

Tables:   1   2   

This is table  1  of  2  ( 121 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4997--5115	59	2.0	59	96	0	220	42	15	14	26	1.86
12093--12165	21	3.4	21	69	14	67	41	12	12	34	1.80
12092--12179	44	2.0	44	97	0	167	37	15	11	35	1.84
12570--12595	6	4.3	6	100	0	52	38	46	0	15	1.46
21361--21398	16	2.4	16	87	12	53	21	2	2	73	1.07
30516--30566	21	2.4	21	81	18	70	49	1	3	45	1.32
31963--31996	6	5.7	6	85	0	50	20	0	0	79	0.73
34292--34382	47	1.9	47	88	0	137	30	12	14	42	1.82
41906--42512	311	2.0	310	93	1	1036	32	12	13	42	1.81
47687--47737	22	2.3	22	83	6	59	47	5	5	41	1.52
54346--54554	104	2.0	104	95	0	373	33	14	19	33	1.92
60496--60523	13	2.2	13	100	0	56	46	7	14	32	1.71
60908--61018	58	1.9	58	85	3	152	42	13	17	27	1.86
61192--61301	58	1.9	58	94	3	195	39	13	16	30	1.87
60801--61377	280	2.0	284	90	3	916	45	13	13	27	1.81
62452--62493	18	2.3	18	80	8	50	47	0	2	50	1.14
66972--67209	119	2.0	119	100	0	476	47	15	14	21	1.81
69619--69656	14	2.5	15	83	16	51	39	0	0	60	0.97
69628--69668	9	4.7	9	80	14	50	36	0	2	60	1.10
70724--70768	19	2.4	20	82	14	60	48	4	0	46	1.22
72222--72275	20	2.7	20	80	8	65	53	0	1	44	1.11
79569--79620	23	2.3	23	83	6	61	46	3	1	48	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79830--79868	20	2.0	20	89	0	60	46	0	2	51	1.14
80099--80151	22	2.5	21	76	11	54	26	7	0	66	1.18
80669--80718	13	4.0	12	78	19	57	56	0	4	40	1.18
80671--80718	19	2.6	18	81	15	53	56	0	4	39	1.19
83125--83702	204	2.9	203	79	8	567	28	12	14	45	1.80
99850--100061	106	2.0	106	97	0	397	28	14	15	41	1.86
101029--101662	218	2.9	216	87	3	878	25	13	20	40	1.89
105056--105363	152	2.0	151	94	0	535	30	22	13	33	1.93
111028--111124	33	3.2	31	67	27	82	57	21	12	8	1.61
110910--111262	55	6.3	57	78	9	352	59	20	9	10	1.58
111036--111127	29	3.2	29	64	11	71	57	23	11	6	1.58
110914--111262	109	3.1	112	82	7	365	59	20	10	10	1.59
113010--113081	19	3.9	17	72	16	63	37	0	0	62	0.95
113014--113095	9	8.7	9	71	18	60	36	1	0	62	1.03
113000--113129	38	3.3	38	77	12	120	37	1	1	59	1.16
122418--122471	28	1.9	28	84	0	72	38	14	3	42	1.64
132361--132865	212	2.4	201	85	6	636	42	14	12	29	1.83
143229--143300	34	2.1	34	97	0	135	31	37	15	15	1.88
147276--147350	17	4.3	17	72	11	62	37	1	0	61	1.05
147295--147348	16	3.2	16	77	10	54	33	0	0	66	0.92
152439--152476	11	3.5	11	80	20	53	71	2	0	26	1.00
154509--154540	6	5.2	6	96	3	55	18	0	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156775--156817	18	2.4	18	80	3	52	13	6	6	72	1.27
159598--159893	42	7.0	42	92	0	448	25	12	28	32	1.93
159985--160393	201	2.0	201	99	0	809	30	19	23	26	1.98
163766--163806	13	3.2	13	82	6	57	46	0	7	46	1.30
174295--174336	17	2.6	16	75	10	50	76	0	21	2	0.90
174545--174570	12	2.2	12	100	0	52	50	0	0	50	1.00
177011--177130	45	2.7	45	82	0	159	34	26	19	20	1.96
182411--182469	30	1.9	31	89	3	93	52	8	6	32	1.58
184538--184603	24	2.8	24	83	2	80	30	4	6	59	1.42
188792--188852	3	20.3	3	93	0	77	57	0	42	0	0.98
189151--189180	14	2.1	14	93	0	51	70	0	26	3	1.03
202930--202981	16	3.3	15	73	7	50	69	0	3	26	1.06
208287--208553	131	2.0	133	86	6	371	31	17	15	35	1.91
221759--221805	24	2.0	24	91	4	78	25	10	17	46	1.79
233398--233449	20	2.5	22	77	22	67	48	19	0	32	1.49
233398--233453	21	2.8	20	84	15	71	51	17	0	30	1.46
234785--234860	28	2.6	29	83	8	91	51	1	2	44	1.23
234828--234875	22	2.1	23	81	11	55	50	4	0	45	1.21
237029--237053	9	2.8	9	100	0	50	24	0	12	64	1.27
238164--238235	17	4.1	16	76	13	63	38	0	5	55	1.23
238182--238277	36	2.6	36	80	4	104	42	1	4	52	1.27
238182--238277	17	5.3	18	75	10	72	42	1	4	52	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238182--238257	6	12.8	6	74	13	59	40	0	5	53	1.23
243011--243124	62	1.9	61	89	5	178	42	2	3	51	1.32
243936--243979	22	2.0	23	90	4	72	0	29	4	65	1.12
250465--250516	20	2.4	23	72	21	58	51	3	1	42	1.31
250626--250656	16	1.9	16	100	0	62	41	6	0	51	1.27
261935--262015	30	2.7	30	84	0	108	23	7	41	27	1.81
270272--270323	25	2.0	25	85	7	68	57	5	5	30	1.46
271052--271106	17	3.4	17	72	25	55	56	0	0	43	0.99
271214--271274	26	2.3	26	80	11	61	37	3	4	54	1.39
277751--277787	13	2.8	13	100	0	74	91	0	8	0	0.41
284193--284223	16	2.0	15	93	6	53	70	3	0	25	1.02
285272--285324	22	2.5	20	81	9	61	47	0	0	52	1.00
285953--286002	26	2.0	26	84	7	68	60	8	0	32	1.26
288266--288333	3	22.7	3	74	16	52	1	36	1	60	1.15
288284--288312	12	2.4	12	100	0	58	0	34	0	65	0.93
288265--288333	18	3.8	18	81	11	79	1	37	1	59	1.15
288287--288330	15	2.9	15	82	0	61	0	38	0	61	0.96
290847--290917	21	3.4	21	98	0	133	14	43	0	42	1.45
290907--290989	24	3.4	24	72	16	71	7	36	3	53	1.46
293050--293086	18	2.0	19	89	5	58	27	0	2	70	1.01
308085--308118	16	2.2	16	89	5	52	58	0	2	38	1.13
308295--308369	26	3.0	25	73	11	64	52	0	2	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311774--311824	24	2.1	24	89	7	77	21	7	9	60	1.53
321398--321458	31	2.0	31	100	0	122	26	14	26	32	1.95
324015--324094	23	3.5	22	86	5	97	13	21	27	37	1.91
323994--324094	45	2.2	46	79	8	109	12	23	25	37	1.91
326151--326308	81	2.0	81	100	0	316	30	14	16	38	1.89
327759--327839	19	4.1	19	78	9	90	54	7	8	29	1.58
327754--327841	41	2.1	41	97	0	167	53	6	7	31	1.56
340735--340776	21	2.0	21	90	0	66	47	11	16	23	1.80
342618--342668	24	2.1	24	88	0	75	39	0	0	60	0.97
343019--343082	28	2.3	27	78	21	71	32	1	3	62	1.20
343151--343175	13	1.9	13	100	0	50	24	0	24	52	1.48
343401--343428	2	14.0	2	100	0	56	50	0	0	50	1.00
345034--345118	32	2.6	32	74	12	84	56	7	8	28	1.55
354921--354990	23	3.0	23	78	2	77	41	17	11	30	1.84
362540--362724	69	2.7	69	95	0	343	38	13	16	30	1.88
372539--372588	8	5.8	9	84	11	61	66	2	0	32	1.03
372523--372591	27	2.5	27	77	11	77	59	1	1	37	1.15
374714--374750	18	2.1	18	90	10	58	45	0	0	54	1.00
374737--374767	15	2.0	16	93	6	55	61	0	0	38	0.96
398538--398616	31	2.5	31	87	0	104	41	3	0	54	1.18
404763--405261	252	2.0	249	92	1	838	31	18	27	22	1.97
408483--408536	19	2.7	20	77	11	56	61	1	0	37	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408483--408539	21	2.9	19	75	10	60	61	1	0	36	1.07
408469--408591	49	2.4	49	79	16	112	60	1	2	35	1.20
408601--408625	6	4.2	6	100	0	50	52	0	0	48	1.00
412987--413027	6	6.8	6	94	0	73	48	17	34	0	1.47
413760--413793	16	2.1	16	100	0	68	32	5	41	20	1.76
420793--420818	6	4.3	6	100	0	52	0	15	0	84	0.62
422108--422235	65	2.0	65	93	0	220	24	21	25	28	1.99
439677--439716	22	1.9	20	85	10	53	42	12	7	37	1.71
441171--441343	23	7.5	20	71	20	76	43	20	23	12	1.86
441220--441343	23	5.3	23	82	5	133	43	21	23	11	1.85

Tables:   1   2