Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015370.1 Kokia drynarioides strain JFW-HI SEQ_130417, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 443270
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34

Warning! 1022 characters in sequence are not A, C, G, or T


File 2 of 2

Found at i:441293 original size:69 final size:69

Alignment explanation


    Indices: 441170--441319  Score: 198
    Period size: 69  Copynumber: 2.1  Consensus size: 69

     441160 TATACGGAAC

                                               *        *    *               
     441170 AAACAGAGAGTACCAAAGTACTAACAGAGAGCACATAAGTGCTGGGTAATAGAGAACACACACAG
          1 AAACAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCTGAGT-ACAGAGAACACACACAG

                 
     441235 TGCT-
         65 TGCTA

                                                                     *       
     441239 AAACAGAGAGTACACAAAGTACTAATCAGAGAGCACACAAAGTGCT-AGT-CAGAGAGCACACAC
          1 AAACAGAGAGTAC-CAAAGTACTAA-CAGAGAGCACA-AAAGTGCTGAGTACAGAGAACACACAC

                   
     441302 AGTGCTA
         63 AGTGCTA

                       
     441309 ATAACAGAGAG
          1 A-AACAGAGAG

     441320 CACGAGACGT


Statistics
Matches: 72,  Mismatches: 4, Indels: 8
        0.86            0.05        0.10

Matches are distributed among these distances:
  69   31  0.43
  70   12  0.17
  71   22  0.31
  72    7  0.10

ACGTcount: A:0.45, C:0.19, G:0.23, T:0.13


Consensus pattern (69 bp):   
AAACAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCTGAGTACAGAGAACACACACAGT
GCTA

Done.