Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015373.1 Kokia drynarioides strain JFW-HI SEQ_130420, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 603110
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33

Warning! 225 characters in sequence are not A, C, G, or T


File 3 of 3

Found at i:602343 original size:36 final size:35

Alignment explanation


    Indices: 602303--602451  Score: 84
    Period size: 36  Copynumber: 4.1  Consensus size: 35

     602293 AAAATTAGCA

                                                
     602303 AACTGTAAAAATGATAGTCGCAATAGTAAATCAATG
          1 AACTGTAAAAATGATAG-CGCAATAGTAAATCAATG

                         ** *          * *        *
     602339 AACTGTTAGAAAACCAAACGCAGCAATCGAAAATCAA-C
          1 AACTG-TA-AAAATGATA-GC-GCAATAGTAAATCAATG

                *           * *   *            **
     602377 AGACCGTAAAAATGACAACCGCGATAGTAAATCAACA
          1 A-ACTGTAAAAATGA-TAGCGCAATAGTAAATCAATG

                *              *     *          
     602414 AACTATAAAAATGATAGACACAATAATAAATCAATG
          1 AACTGTAAAAATGATAG-CGCAATAGTAAATCAATG

              
     602450 AA
          1 AA

     602452 TTGTTAGAAA


Statistics
Matches: 82,  Mismatches: 23, Indels: 16
        0.68            0.19        0.13

Matches are distributed among these distances:
  35    1  0.01
  36   43  0.52
  37    9  0.11
  38   12  0.15
  39   17  0.21

ACGTcount: A:0.52, C:0.17, G:0.13, T:0.18


Consensus pattern (35 bp):   
AACTGTAAAAATGATAGCGCAATAGTAAATCAATG

Done.