Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015374.1 Kokia drynarioides strain JFW-HI SEQ_130421, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23795
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36

Warning! 111 characters in sequence are not A, C, G, or T


Found at i:2918 original size:17 final size:18

Alignment explanation


    Indices: 2880--2920  Score: 57
    Period size: 18  Copynumber: 2.3  Consensus size: 18

       2870 CTTTACTTTT

                       *   *  
       2880 ATTTTATTTTACCACTGA
          1 ATTTTATTTTAACACAGA

                              
       2898 ATTTTATTTTAACA-AGA
          1 ATTTTATTTTAACACAGA

                  
       2915 ATTTTA
          1 ATTTTA

       2921 GTCACCAAAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  17    8  0.38
  18   13  0.62

ACGTcount: A:0.34, C:0.10, G:0.05, T:0.51


Consensus pattern (18 bp):   
ATTTTATTTTAACACAGA

Found at i:7544 original size:107 final size:107

Alignment explanation


    Indices: 7358--7571  Score: 419
    Period size: 107  Copynumber: 2.0  Consensus size: 107

       7348 GTTGTACTAC

                                                                             
       7358 CAGTCAAAAAGTTGGGGGAAAACAATAATGTTAAATTTCCATAGCAAAAAAGGAGAGGAAGGGAT
          1 CAGTCAAAAAGTTGGGGGAAAACAATAATGTTAAATTTCCATAGCAAAAAAGGAGAGGAAGGGAT

                                                      
       7423 AATCATGGCAGTTGACTATTTTGTCACTTTTCGATAACGTTA
         66 AATCATGGCAGTTGACTATTTTGTCACTTTTCGATAACGTTA

                                                          *                  
       7465 CAGTCAAAAAGTTGGGGGAAAACAATAATGTTAAATTTCCATAGCAGAAAAGGAGAGGAAGGGAT
          1 CAGTCAAAAAGTTGGGGGAAAACAATAATGTTAAATTTCCATAGCAAAAAAGGAGAGGAAGGGAT

                                                      
       7530 AATCATGGCAGTTGACTATTTTGTCACTTTTCGATAACGTTA
         66 AATCATGGCAGTTGACTATTTTGTCACTTTTCGATAACGTTA

       7572 GTCGTTGTTT


Statistics
Matches: 106,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 107  106  1.00

ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27


Consensus pattern (107 bp):   
CAGTCAAAAAGTTGGGGGAAAACAATAATGTTAAATTTCCATAGCAAAAAAGGAGAGGAAGGGAT
AATCATGGCAGTTGACTATTTTGTCACTTTTCGATAACGTTA
Done.