genome.fa.s15376.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015376.1 Kokia drynarioides strain JFW-HI SEQ_130423, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  193640

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--209	110	1.9	111	85	6	287	20	21	25	33	1.97
7616--7658	22	2.0	21	82	13	52	13	27	11	46	1.78
11480--11661	96	1.9	96	82	6	226	35	13	20	30	1.91
11999--12292	29	10.0	30	84	8	356	30	4	31	32	1.79
11975--12292	59	5.4	59	84	7	407	31	5	30	32	1.79
13855--13941	6	15.2	6	71	17	69	51	2	0	45	1.13
13848--13895	23	2.1	23	92	7	80	52	2	0	45	1.12
13861--13941	17	4.8	17	89	0	117	51	2	0	45	1.14
17813--17863	27	1.9	26	84	4	66	43	1	3	50	1.31
20735--20846	51	2.2	51	80	6	129	37	9	18	33	1.84
27245--27502	26	10.2	26	72	6	111	19	23	17	39	1.92
27271--27330	24	2.5	24	97	0	111	15	33	21	30	1.94
27303--27451	50	3.0	50	84	0	208	20	24	15	38	1.92
27242--27387	74	2.0	74	83	0	184	20	26	17	35	1.94
31855--32102	29	8.4	30	76	11	203	35	26	3	34	1.73
31854--32102	59	4.2	58	81	5	277	35	26	3	34	1.73
31849--32105	117	2.2	117	85	4	331	34	27	3	35	1.73
31855--32131	59	4.7	57	75	11	197	35	27	3	34	1.73
32135--32208	29	2.5	30	85	12	93	37	21	2	37	1.68
32135--32231	30	3.3	29	83	11	101	36	21	3	39	1.69
42777--42896	57	2.1	58	84	7	156	38	21	18	21	1.94
42801--42885	28	3.0	29	70	13	77	37	23	17	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42940--43122	28	6.6	28	78	9	160	25	14	24	36	1.93
42940--43118	84	2.1	84	82	9	206	25	13	24	35	1.93
42969--43190	28	8.0	27	73	12	114	26	14	23	35	1.93
42968--43170	56	3.6	55	77	8	160	25	14	24	35	1.94
43151--43223	27	2.7	27	72	8	76	36	15	21	26	1.93
45797--45946	27	5.6	26	72	6	113	30	25	16	28	1.96
45797--45966	54	3.1	54	77	3	171	32	24	16	27	1.96
46774--46819	25	1.9	25	86	8	69	32	4	6	56	1.45
49785--49923	27	5.0	27	78	3	116	25	14	22	37	1.92
49783--49915	54	2.4	55	83	5	162	26	14	21	38	1.91
49811--49920	28	4.0	28	84	4	116	26	14	21	37	1.92
61123--61178	21	2.6	21	88	2	76	58	12	26	1	1.44
65675--65854	87	2.1	87	92	2	299	23	11	21	43	1.84
68535--68612	28	2.8	28	84	5	106	35	23	16	24	1.95
76094--76286	103	1.9	103	94	0	341	20	7	15	56	1.63
78706--78777	29	2.4	31	83	4	94	34	0	12	52	1.39
91505--91723	42	5.2	41	81	5	224	25	24	10	39	1.87
91505--91723	84	2.6	84	83	7	248	25	24	10	39	1.87
92928--92988	28	2.2	28	85	2	79	40	13	18	27	1.87
92855--93130	142	1.9	142	91	1	455	36	18	19	25	1.94
93065--93139	27	2.7	28	81	4	89	32	20	20	28	1.97
93070--93520	28	15.9	28	72	7	135	33	17	23	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93161--93399	29	8.3	29	75	6	146	29	16	27	26	1.97
93156--93442	86	3.3	84	75	9	249	31	16	26	25	1.96
93549--93591	22	2.0	22	90	4	70	34	13	25	25	1.93
95915--95985	21	3.2	20	74	20	54	26	2	9	60	1.42
99041--99083	18	2.4	18	84	7	52	60	2	9	27	1.40
99126--99159	16	2.1	17	88	5	52	41	0	0	58	0.98
105150--105189	12	3.3	12	82	0	53	25	25	10	40	1.86
105145--105196	24	2.2	24	89	0	77	21	25	11	42	1.86
116745--116808	30	2.1	30	86	11	87	68	0	7	23	1.15
118270--118630	46	8.0	46	82	5	423	26	17	23	32	1.97
118270--118631	134	2.7	137	82	7	425	26	17	23	32	1.97
118270--118602	180	1.9	177	88	1	504	25	18	23	32	1.97
124745--124955	109	1.9	110	84	2	282	35	16	16	31	1.91
128165--128245	6	14.0	6	77	12	80	48	1	1	49	1.17
128158--128245	17	5.1	17	85	1	113	47	1	1	50	1.16
128165--128229	11	5.7	11	74	18	62	47	1	0	50	1.10
128981--129018	20	1.9	20	94	0	67	63	0	0	36	0.95
128981--129016	7	5.3	7	90	6	56	61	0	0	38	0.96
133977--134019	22	2.0	21	82	13	52	48	11	25	13	1.77
141532--142118	206	2.8	206	88	1	827	36	18	21	23	1.95
142433--142503	17	4.1	17	85	1	97	43	1	1	53	1.18
142440--142503	6	11.0	6	72	12	53	43	1	1	53	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142440--142488	23	2.1	23	84	0	62	40	2	0	57	1.10
143172--143207	7	5.3	7	86	6	56	58	0	0	41	0.98
144299--144607	29	10.8	29	76	11	255	35	27	2	34	1.70
144482--144529	23	2.1	23	84	7	62	37	18	6	37	1.76
144306--144607	111	2.7	111	81	6	279	35	27	2	34	1.70
147555--147639	27	3.2	26	76	12	73	54	0	3	42	1.17
147868--147902	15	2.2	16	90	5	54	20	0	2	77	0.90
147863--147905	16	2.6	16	82	14	52	25	0	2	72	0.97
147899--147959	17	3.6	16	73	8	50	31	1	4	62	1.26
147890--147978	19	4.5	19	67	18	56	31	1	3	64	1.17
149149--149185	17	2.2	17	90	0	56	43	10	10	35	1.75
157655--157736	41	2.0	41	100	0	164	41	7	17	34	1.77
160964--161183	112	2.0	111	89	2	334	40	18	9	31	1.82
161299--161341	20	2.2	20	95	0	77	25	11	25	37	1.90
161329--161461	69	1.9	69	84	0	176	31	15	19	33	1.93
161329--161487	69	2.3	69	82	0	174	30	15	20	33	1.93
163667--163714	24	2.0	24	100	0	96	25	25	12	37	1.91
180525--180565	20	2.0	20	100	0	82	48	9	9	31	1.69
191348--191372	3	8.3	3	100	0	50	32	0	0	68	0.90
192085--192140	21	2.6	21	83	10	69	69	1	8	19	1.24
192897--192940	19	2.3	19	88	0	61	50	4	0	45	1.22

Tables:   1

The End!