genome.fa.s15377.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015377.1 Kokia drynarioides strain JFW-HI SEQ_130424, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  212609

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1875--1999	60	2.1	60	82	4	146	24	16	14	45	1.84
2427--2485	15	3.9	15	72	0	55	28	16	0	54	1.43
3169--5137	983	2.0	974	92	1	2779	34	13	18	29	1.90
5318--5525	57	3.7	57	90	1	310	32	10	19	37	1.85
5318--5525	113	1.8	113	89	0	326	32	10	19	37	1.85
5640--5670	14	2.3	14	94	5	55	45	0	6	48	1.28
6343--6383	13	2.9	15	82	7	50	65	4	0	29	1.13
7682--7894	57	3.9	57	82	14	279	35	8	16	39	1.79
7790--7867	23	3.4	23	70	16	81	42	6	14	37	1.71
7779--7868	45	2.0	45	97	0	171	42	5	13	38	1.67
8182--8222	13	2.9	15	82	7	50	65	4	0	29	1.13
16909--16955	18	2.6	18	86	6	60	40	4	2	53	1.32
30454--30555	46	2.2	46	96	0	186	29	16	11	42	1.84
30585--30681	41	2.2	44	83	14	146	40	10	19	29	1.85
30596--30679	41	2.0	42	95	2	152	40	10	21	27	1.86
43058--43243	93	2.0	93	92	0	309	41	21	18	18	1.91
45232--45328	50	1.9	50	97	0	185	26	17	15	40	1.89
49578--49609	2	16.0	2	100	0	64	50	0	50	0	1.00
52646--52678	12	2.6	13	90	4	50	60	0	0	39	0.97
55344--55373	10	3.0	10	100	0	60	0	10	0	90	0.47
58394--58425	16	2.0	16	100	0	64	68	6	12	12	1.37
68923--68973	20	2.6	19	84	9	66	72	1	5	19	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73317--73549	114	2.0	117	89	2	355	24	12	21	40	1.88
77454--77481	1	28.0	1	100	0	56	0	0	0	100	0.00
80021--80087	28	2.4	28	100	0	134	23	7	22	46	1.77
92516--92834	159	2.0	159	98	0	620	31	21	22	24	1.98
107684--107758	24	3.1	24	90	0	114	26	10	8	54	1.62
109697--109747	24	2.1	24	88	0	75	23	5	9	60	1.50
109709--109759	24	2.1	24	85	0	66	23	9	13	52	1.70
120160--120208	24	2.1	24	88	3	73	20	18	18	42	1.89
120584--120636	24	2.2	25	82	3	63	50	9	3	35	1.53
120813--120859	18	2.6	18	86	0	58	14	25	23	36	1.93
121299--121338	2	19.5	2	94	5	71	47	0	2	50	1.14
121536--121593	21	2.8	21	72	15	57	48	1	10	39	1.48
125417--125457	13	3.2	13	82	10	57	12	2	2	82	0.86
133187--133255	30	2.3	30	82	9	79	43	0	4	52	1.21
141126--141151	3	8.7	3	100	0	52	69	0	0	30	0.89
142511--142551	2	20.5	2	100	0	82	51	0	0	48	1.00
143605--143632	4	7.0	4	100	0	56	50	25	0	25	1.50
146034--146063	2	15.0	2	100	0	60	50	0	0	50	1.00
146719--146854	71	1.9	70	100	0	263	52	7	8	30	1.60
148412--148464	25	2.2	23	83	6	61	35	1	5	56	1.34
149798--149836	18	2.2	18	86	9	53	38	0	10	51	1.36
161377--161419	21	2.0	21	100	0	86	41	18	9	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161634--161668	2	17.5	2	100	0	70	48	0	0	51	1.00
168156--168222	31	2.2	31	97	0	125	40	19	14	25	1.90
171112--171182	30	2.4	29	81	6	79	47	1	5	45	1.35
173257--173430	95	1.8	95	87	2	260	25	13	22	38	1.91
177089--177142	26	2.1	26	100	0	108	38	11	20	29	1.87
177191--177219	14	2.1	14	100	0	58	65	6	0	27	1.18
180963--180987	5	5.0	5	100	0	50	20	0	40	40	1.52
183691--183721	6	5.2	6	100	0	62	51	32	0	16	1.44
183891--183933	22	1.9	23	85	4	61	41	2	0	55	1.12
184973--185247	149	1.9	148	92	3	464	41	8	6	43	1.60
185981--186010	12	2.4	12	94	5	51	0	10	0	90	0.47
185981--186010	14	2.1	15	93	6	53	0	10	0	90	0.47
189478--189509	12	2.4	14	90	10	50	59	0	6	34	1.23
189537--189570	2	17.0	2	100	0	68	50	0	0	50	1.00
194522--194569	24	2.0	25	83	4	62	39	2	43	14	1.57
194905--194953	22	2.2	22	89	7	73	26	2	2	69	1.10
199614--199651	2	19.5	2	94	5	69	52	0	0	47	1.00

Tables:   1

The End!