genome.fa.s15379.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015379.1 Kokia drynarioides strain JFW-HI SEQ_130426, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  289102

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3384--3477	18	5.2	18	85	5	109	24	24	18	32	1.97
5320--5363	7	6.0	7	79	10	52	18	0	2	79	0.83
22159--22195	6	6.2	6	100	0	74	32	0	35	32	1.58
29318--29342	2	12.5	2	100	0	50	52	0	0	48	1.00
31748--31789	16	2.4	17	84	15	59	71	2	4	21	1.16
48551--48581	6	5.2	6	100	0	62	0	16	67	16	1.23
48839--48881	22	2.0	22	81	9	52	58	4	34	2	1.32
60260--60300	22	2.0	21	85	9	57	24	26	21	26	2.00
62725--62794	26	2.7	26	90	0	113	40	7	17	35	1.77
62725--62788	13	4.9	13	70	14	60	42	7	15	34	1.76
68503--68548	24	1.9	24	82	8	58	26	4	6	63	1.38
68543--68588	21	2.2	20	92	3	74	39	4	4	52	1.41
69271--69310	21	2.0	21	85	5	55	55	17	5	22	1.61
70224--70281	29	2.0	30	86	6	84	51	15	5	27	1.64
75694--75731	17	2.3	17	90	4	60	44	0	0	55	0.99
77460--77630	29	5.7	30	84	7	197	35	26	5	32	1.81
77461--77631	59	2.9	58	84	8	211	35	26	5	32	1.81
82197--82263	19	3.6	18	72	13	55	29	1	2	65	1.16
94393--94440	25	1.9	25	82	0	60	64	8	2	25	1.32
101687--102631	376	2.5	376	89	3	1421	41	26	11	20	1.86
103998--104386	99	4.0	98	82	11	467	25	5	20	48	1.72
107277--107301	3	8.3	3	100	0	50	32	0	36	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112160--112210	26	2.0	26	88	0	75	54	23	7	13	1.65
132650--132680	16	1.9	16	93	0	53	70	0	0	29	0.87
133613--133690	40	2.0	40	89	0	120	20	11	24	43	1.85
146533--146576	21	2.1	21	82	0	52	47	13	4	34	1.63
163581--163606	2	13.0	2	100	0	52	50	0	0	50	1.00
174886--175085	62	3.2	62	85	4	260	38	19	13	29	1.89
184583--184718	60	2.2	61	83	10	172	27	10	15	46	1.78
186847--186876	2	15.0	2	100	0	60	50	0	0	50	1.00
186983--187028	23	2.0	23	86	0	65	23	8	10	56	1.61
189280--189322	21	2.0	22	82	13	54	37	4	2	55	1.33
197515--197611	49	2.0	49	95	0	176	34	10	13	42	1.78
200806--200855	12	4.1	12	89	2	64	68	18	6	8	1.36
200804--200888	43	2.0	43	86	4	118	68	18	4	8	1.33
200900--200969	20	3.3	20	78	9	77	70	17	5	7	1.30
200900--200975	22	3.6	21	80	5	64	69	17	5	7	1.31
201379--201584	110	1.9	110	89	2	324	47	14	10	28	1.76
226624--226704	28	2.9	28	85	5	101	70	2	0	27	1.00
229415--229477	16	3.9	16	76	12	67	46	3	9	41	1.52
229415--229463	17	2.9	16	79	8	53	44	4	8	42	1.53
230209--230265	30	1.9	30	82	10	73	61	10	0	28	1.29
230207--230250	21	2.0	22	82	4	54	63	9	0	27	1.24
241401--241446	14	3.4	14	71	17	51	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241377--241459	27	3.1	27	91	3	132	54	0	0	45	0.99
248402--249003	198	3.0	197	90	3	924	39	18	16	25	1.91
256245--256277	17	1.9	17	93	0	57	60	15	0	24	1.35
259129--259305	72	2.4	73	90	0	284	33	27	16	21	1.95
262290--262344	18	3.1	18	80	15	60	25	0	7	67	1.16
288063--288116	26	2.1	26	100	0	108	35	22	3	38	1.72
288316--288395	23	3.5	22	82	3	88	38	28	18	13	1.89
288498--288545	24	1.9	26	84	16	66	31	22	0	45	1.53

Tables:   1

The End!