Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015382.1 Kokia drynarioides strain JFW-HI SEQ_130429, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 764726
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 399 characters in sequence are not A, C, G, or T
File 3 of 3
Found at i:569907 original size:15 final size:15
Alignment explanation
Indices: 569887--569915 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
569877 GAATTTGAAA
569887 TGGTTTTTTTTATTT
1 TGGTTTTTTTTATTT
569902 TGGTTTTTTTTATT
1 TGGTTTTTTTTATT
569916 GGTAGGACAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.00, G:0.14, T:0.79
Consensus pattern (15 bp):
TGGTTTTTTTTATTT
Found at i:587839 original size:23 final size:22
Alignment explanation
Indices: 587813--587934 Score: 109
Period size: 25 Copynumber: 5.1 Consensus size: 22
587803 CACTAGCGCA
*
587813 CTCTCTAATTAGCACTGTGTGTG
1 CTCTCTGATTAGCACT-TGTGTG
* ** * *
587836 CTCTCTGTTTAGCAAGTCTCATG
1 CTCTCTGATTAGCACTTGT-GTG
587859 CTCTCTGTTATTAGCACTTCGTGTG
1 CTCTCTG--ATTAGCACTT-GTGTG
587884 CTCTCTGTTATTAGCACTTCGTGTG
1 CTCTCTG--ATTAGCACTT-GTGTG
587909 CTCTCTGATTAGCACTTTGTGTG
1 CTCTCTGATTAGCAC-TTGTGTG
587932 CTC
1 CTC
587935 AATACTTTGT
Statistics
Matches: 83, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
22 2 0.02
23 37 0.45
24 2 0.02
25 41 0.49
26 1 0.01
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.42
Consensus pattern (22 bp):
CTCTCTGATTAGCACTTGTGTG
Found at i:587883 original size:48 final size:47
Alignment explanation
Indices: 587813--587934 Score: 133
Period size: 48 Copynumber: 2.5 Consensus size: 47
587803 CACTAGCGCA
*
587813 CTCTCTAATTAGCACTGTGTGTGCTCTCTG-T-TTAGCAAGTC-TCATG
1 CTCTCTGATTAGCACT-TGTGTGCTCTCTGTTATTAGCAAGTCGT-ATG
** *
587859 CTCTCTGTTATTAGCACTTCGTGTGCTCTCTGTTATTAGCACTTCGTGTG
1 CTCTCTG--ATTAGCACTT-GTGTGCTCTCTGTTATTAGCAAGTCGTATG
587909 CTCTCTGATTAGCACTTTGTGTGCTC
1 CTCTCTGATTAGCAC-TTGTGTGCTC
587935 AATACTTTGT
Statistics
Matches: 65, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
46 6 0.09
47 1 0.02
48 37 0.57
49 3 0.05
50 17 0.26
51 1 0.02
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.42
Consensus pattern (47 bp):
CTCTCTGATTAGCACTTGTGTGCTCTCTGTTATTAGCAAGTCGTATG
Found at i:587963 original size:39 final size:39
Alignment explanation
Indices: 587899--587973 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
587889 TGTTATTAGC
*
587899 ACTTCGTGTGCTCTCTGATTAGCACTTTGTGTGCTCAAT
1 ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTCAAT
* *
587938 ACTTTGTGTACTCTCTGTTTAGCACTTTGTGTGCTC
1 ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTC
587974 TCTGTTACCC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.13, C:0.23, G:0.20, T:0.44
Consensus pattern (39 bp):
ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTCAAT
Found at i:587968 original size:23 final size:23
Alignment explanation
Indices: 587937--588021 Score: 86
Period size: 23 Copynumber: 3.7 Consensus size: 23
587927 GTGTGCTCAA
587937 TACTTTGTGTACTCTCTGTTTAG
1 TACTTTGTGTACTCTCTGTTTAG
* * *
587960 CACTTTGTGTGCTCTCTGTTACCCAG
1 TACTTTGTGTACTCTCTGTT---TAG
587986 TACTTATGTG--CTCTCTGTTTAG
1 TACTT-TGTGTACTCTCTGTTTAG
588008 TACTTTG-GTACTCT
1 TACTTTGTGTACTCT
588022 TCGTTTGTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
20 1 0.02
21 2 0.04
22 11 0.22
23 18 0.35
25 9 0.18
26 6 0.12
27 4 0.08
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47
Consensus pattern (23 bp):
TACTTTGTGTACTCTCTGTTTAG
Found at i:589538 original size:30 final size:31
Alignment explanation
Indices: 589502--589573 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
589492 GTTACATATA
* * *
589502 ACAAAATAGTCACTCAACTT-TGAAAATGTG
1 ACAAAATAGTCACTAAAATTATGAAAAAGTG
* *
589532 ACAAAATAGTTACTAAAATTATTAAAAAGTG
1 ACAAAATAGTCACTAAAATTATGAAAAAGTG
589563 ACAAAATAGTC
1 ACAAAATAGTC
589574 CTCTTGTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
30 17 0.49
31 18 0.51
ACGTcount: A:0.50, C:0.12, G:0.11, T:0.26
Consensus pattern (31 bp):
ACAAAATAGTCACTAAAATTATGAAAAAGTG
Found at i:590938 original size:30 final size:30
Alignment explanation
Indices: 590880--590947 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
590870 ACAAGAGGAT
* * *
590880 TATTTTGTCACTTTTCATAATTTTAGTGAC
1 TATTTTGTCACTTTCCATAAGTTGAGTGAC
* *
590910 TGTTTTGTCACATTTCCA-AAGTTGAGTGAT
1 TATTTTGTCAC-TTTCCATAAGTTGAGTGAC
590940 TATTTTGT
1 TATTTTGT
590948 TAAACGTAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
30 26 0.84
31 5 0.16
ACGTcount: A:0.22, C:0.12, G:0.15, T:0.51
Consensus pattern (30 bp):
TATTTTGTCACTTTCCATAAGTTGAGTGAC
Found at i:591095 original size:30 final size:31
Alignment explanation
Indices: 591038--591102 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
591028 GACGGAAAAA
* *
591038 GACTGTTTTGTCATATTTTCAAAAGTTGAGG
1 GACTATTTTGTCACATTTTCAAAAGTTGAGG
591069 GACTATTTTGTCACATTTTC-AAAGTTGAGG
1 GACTATTTTGTCACATTTTCAAAAGTTGAGG
591099 GACT
1 GACT
591103 GAAATATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 14 0.44
31 18 0.56
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.40
Consensus pattern (31 bp):
GACTATTTTGTCACATTTTCAAAAGTTGAGG
Found at i:592126 original size:72 final size:72
Alignment explanation
Indices: 592009--592151 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 72
591999 GTGGTGCAGG
* * *
592009 CTGTTGTTTCTTGGTTTGATGGGATTTGTTATCTGGTTTGAGCATGCAGTCTATTGCTGCTCTGC
1 CTGTTGTGTCTTGGTTAGATGGGATTTGTTATCAGGTTTGAGCATGCAGTCTATTGCTGCTCTGC
592074 TTTGCTA
66 TTTGCTA
* * *
592081 CTGTTGTGTCTTGGTTAGCTGGGATTTGTTTTCAGGTTTGAGCATGCAGTCTGTTGCTGCTCTGC
1 CTGTTGTGTCTTGGTTAGATGGGATTTGTTATCAGGTTTGAGCATGCAGTCTATTGCTGCTCTGC
592146 TTTGCT
66 TTTGCT
592152 GTTTTGGCGT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.10, C:0.16, G:0.28, T:0.46
Consensus pattern (72 bp):
CTGTTGTGTCTTGGTTAGATGGGATTTGTTATCAGGTTTGAGCATGCAGTCTATTGCTGCTCTGC
TTTGCTA
Found at i:601430 original size:17 final size:18
Alignment explanation
Indices: 601407--601450 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
601397 TGAGCTGTCT
601407 TAAGTATTAT-TCAAAAAA
1 TAAGTATTATAT-AAAAAA
601425 -AAGTATTATATAAAAAA
1 TAAGTATTATATAAAAAA
601442 TAA-TATTAT
1 TAAGTATTAT
601451 GGTAACTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 21 0.88
18 3 0.12
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (18 bp):
TAAGTATTATATAAAAAA
Found at i:606035 original size:17 final size:15
Alignment explanation
Indices: 605999--606028 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
605989 TCTCAACATT
605999 ATTAAAAGATATTAA
1 ATTAAAAGATATTAA
*
606014 ATTAACAGATATTAA
1 ATTAAAAGATATTAA
606029 TAATTAATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (15 bp):
ATTAAAAGATATTAA
Found at i:610153 original size:4 final size:4
Alignment explanation
Indices: 610146--610172 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
610136 GTAAGTAACA
610146 TTAT TTAT TTAT TTAT TTAT TTAT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTA
610173 AATTCGTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:611226 original size:11 final size:13
Alignment explanation
Indices: 611207--611238 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
611197 AAATATTCAA
611207 AATAAAAATT-TT
1 AATAAAAATTGTT
611219 AA-AAAAATTGTT
1 AATAAAAATTGTT
611231 AATAAAAA
1 AATAAAAA
611239 CAACAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 7 0.39
12 6 0.33
13 5 0.28
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (13 bp):
AATAAAAATTGTT
Found at i:618228 original size:15 final size:16
Alignment explanation
Indices: 618208--618239 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
618198 ATTGAAAAAT
618208 AAAAAATA-AAATAAC
1 AAAAAATATAAATAAC
618223 AAAAAATATAAATAAC
1 AAAAAATATAAATAAC
618239 A
1 A
618240 GGAACAAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.16
Consensus pattern (16 bp):
AAAAAATATAAATAAC
Found at i:622997 original size:42 final size:38
Alignment explanation
Indices: 622950--623055 Score: 124
Period size: 42 Copynumber: 2.7 Consensus size: 38
622940 CCCTTTTTCA
* *
622950 AAAAAAAATCAAAATTTTTTGGTGTCGGTCATTATCCTTGGAT
1 AAAAAAATTCAAAATTTTTTGGTGTCGG-C-TT-T--TCGGAT
622993 AAAAAAATTC-AAATTTTTTGGTGTCGGCTTTTCGGAT
1 AAAAAAATTCAAAATTTTTTGGTGTCGGCTTTTCGGAT
*
623030 AAAAAAATTTCAAACTTTTTTGGTGT
1 AAAAAAA-TTCAAAATTTTTTGGTGT
623056 TGGCCATGCA
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
37 12 0.21
38 3 0.05
39 14 0.24
40 2 0.03
41 1 0.02
42 17 0.29
43 9 0.16
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (38 bp):
AAAAAAATTCAAAATTTTTTGGTGTCGGCTTTTCGGAT
Found at i:623134 original size:47 final size:47
Alignment explanation
Indices: 623060--623151 Score: 130
Period size: 47 Copynumber: 2.0 Consensus size: 47
623050 TGGTGTTGGC
* *
623060 CATGCAATGGCCGACACCCCCTGTTCTCGGATAAAAAAATCTCAAGT
1 CATGCAATGACCGACACCCCCTGTTCTCAGATAAAAAAATCTCAAGT
* * * *
623107 CATGCAATGACTGACACCCCGTTTTCTCAGATAAAAAAATTTCAA
1 CATGCAATGACCGACACCCCCTGTTCTCAGATAAAAAAATCTCAA
623152 ATTTTTTTGG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (47 bp):
CATGCAATGACCGACACCCCCTGTTCTCAGATAAAAAAATCTCAAGT
Found at i:624362 original size:61 final size:61
Alignment explanation
Indices: 624288--624670 Score: 352
Period size: 61 Copynumber: 6.3 Consensus size: 61
624278 ATTTTTTACA
* *
624288 ATGGCCGACACCAAAAAAATTTAAAATTTTTTTATCTGAAAAAGAGGGTGTCGACCATTAC
1 ATGGCCAACACCAAAAAAATTTAAAATTTTTTTATCTGAAAAAGAGGGTGTCGACCATTGC
* * * * *
624349 ATGGCCAATACCAAAAAAATTTAAAATTTTTTTATCCGAGAACAGGGGGTGTCGGCCATTGC
1 ATGGCCAACACCAAAAAAATTTAAAATTTTTTTATCTGA-AAAAGAGGGTGTCGACCATTGC
* * ** *
624411 ATGGCCAACACCAAAAAAATTTGAAA-TTTTTTAT-TCGAGAACAGAAAGTGTCGGCCATTGC
1 ATGGCCAACACCAAAAAAATTTAAAATTTTTTTATCT-GA-AAAAGAGGGTGTCGACCATTGC
** * *
624472 ATGGCCAACACC-AAAAAATTT-TGATTTTTTT-TTTGAAAAAGGGGGTGTCGACCATTGC
1 ATGGCCAACACCAAAAAAATTTAAAATTTTTTTATCTGAAAAAGAGGGTGTCGACCATTGC
* ** * * ** *
624530 ATGGCTAACACCAAAAACTTTTGAAAATTTTTTT-TCTAAAAAAGAGAGTGTCGGTCATCGC
1 ATGGCCAACACCAAAAAAATTT-AAAATTTTTTTATCTGAAAAAGAGGGTGTCGACCATTGC
* ** * * * * * * *
624591 ATGGCCAACACC-CAAAAA-TGCAATTTTTTTTATCAGATAAATAGGGATGTTGGCCATTGT
1 ATGGCCAACACCAAAAAAATTTAAAATTTTTTTATCTGAAAAAGAGGG-TGTCGACCATTGC
624651 ATGGCCAACA-CAAAAAAATT
1 ATGGCCAACACCAAAAAAATT
624671 GTACTTTTTA
Statistics
Matches: 262, Mismatches: 49, Indels: 22
0.79 0.15 0.07
Matches are distributed among these distances:
58 37 0.14
59 22 0.08
60 43 0.16
61 118 0.45
62 42 0.16
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (61 bp):
ATGGCCAACACCAAAAAAATTTAAAATTTTTTTATCTGAAAAAGAGGGTGTCGACCATTGC
Found at i:624555 original size:119 final size:122
Alignment explanation
Indices: 624288--624670 Score: 379
Period size: 119 Copynumber: 3.2 Consensus size: 122
624278 ATTTTTTACA
* ** * *
624288 ATGGCCGACACCAAAAAAATTT-AAAATTTTTTTATCTG-AAAAAGAGGGTGTCGACCATTACAT
1 ATGGCCAACACCAAAAAAATTTGAAAATTTTTTT-TC-GAAAAAAGAAAGTGTCGGCCATTGCAT
* * *
624351 GGCCAATACCAAAAAAATTTAAAATTTTTTTATCCGAGAACAGGGGGTGTCGGCCATTGC
64 GGCCAACACC-AAAAAATTTAAAATTTTTTTATCCGAGAAAAGGGGGTGTCGACCATTGC
* *
624411 ATGGCCAACACCAAAAAAATTTG-AAATTTTTTATTCGAGAACAGAAAGTGTCGGCCATTGCATG
1 ATGGCCAACACCAAAAAAATTTGAAAATTTTTT-TTCGAAAAAAGAAAGTGTCGGCCATTGCATG
** **
624475 GCCAACACCAAAAAATTT-TGATTTTTTT-TTTGA-AAAAGGGGGTGTCGACCATTGC
65 GCCAACACCAAAAAATTTAAAATTTTTTTATCCGAGAAAAGGGGGTGTCGACCATTGC
* ** * * * *
624530 ATGGCTAACACCAAAAACTTTTGAAAATTTTTTTTCTAAAAAAGAGAGTGTCGGTCATCGCATGG
1 ATGGCCAACACCAAAAAAATTTGAAAATTTTTTTTCGAAAAAAGAAAGTGTCGGCCATTGCATGG
* ** * * * * * * *
624595 CCAACACCCAAAAA-TGCAATTTTTTTTATCAGATAAATA-GGGATGTTGGCCATTGT
66 CCAACACCAAAAAATTTAAAATTTTTTTATCCGAGAAA-AGGGGGTGTCGACCATTGC
624651 ATGGCCAACA-CAAAAAAATT
1 ATGGCCAACACCAAAAAAATT
624671 GTACTTTTTA
Statistics
Matches: 215, Mismatches: 37, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
118 1 0.00
119 86 0.40
120 23 0.11
121 33 0.15
122 11 0.05
123 60 0.28
124 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (122 bp):
ATGGCCAACACCAAAAAAATTTGAAAATTTTTTTTCGAAAAAAGAAAGTGTCGGCCATTGCATGG
CCAACACCAAAAAATTTAAAATTTTTTTATCCGAGAAAAGGGGGTGTCGACCATTGC
Found at i:627184 original size:2 final size:2
Alignment explanation
Indices: 627177--627201 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
627167 ATGCACCTTT
627177 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
627202 TAAGTCAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:627968 original size:12 final size:13
Alignment explanation
Indices: 627951--627982 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
627941 GTATTTAAAA
627951 ATTTTAAAA-TAT
1 ATTTTAAAATTAT
627963 ATTTTAAAATTAT
1 ATTTTAAAATTAT
627976 ATTTTAA
1 ATTTTAA
627983 CCCCTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTTTAAAATTAT
Found at i:631754 original size:4 final size:4
Alignment explanation
Indices: 631745--631769 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
631735 GTTTTAGGGT
631745 AGGC AGGC AGGC AGGC AGGC AGGC A
1 AGGC AGGC AGGC AGGC AGGC AGGC A
631770 TTTATTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.28, C:0.24, G:0.48, T:0.00
Consensus pattern (4 bp):
AGGC
Found at i:636640 original size:3 final size:3
Alignment explanation
Indices: 636632--636671 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
636622 CACACACCCA
* * *
636632 CTT CTT CTT CTT CTT CGT CTT CTT CAT CTT CAT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
636672 ACTTCCCGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.05, C:0.35, G:0.03, T:0.57
Consensus pattern (3 bp):
CTT
Found at i:662410 original size:22 final size:22
Alignment explanation
Indices: 662382--662425 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
662372 CCAAATATGG
662382 ATACCTAAAGTTGGTTGCATGA
1 ATACCTAAAGTTGGTTGCATGA
662404 ATACCTAAAGTTGGTTGCATGA
1 ATACCTAAAGTTGGTTGCATGA
662426 GATCAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.32
Consensus pattern (22 bp):
ATACCTAAAGTTGGTTGCATGA
Found at i:669769 original size:24 final size:24
Alignment explanation
Indices: 669737--669792 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
669727 TCATGTGGGG
*
669737 GATTGCTGCAACCATAGACGAGAC
1 GATTGCTGCAACCACAGACGAGAC
669761 GATTGCTGCAACCACAGACGAGAC
1 GATTGCTGCAACCACAGACGAGAC
669785 GATTGCTG
1 GATTGCTG
669793 ATGAACAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.30, C:0.25, G:0.27, T:0.18
Consensus pattern (24 bp):
GATTGCTGCAACCACAGACGAGAC
Found at i:675888 original size:22 final size:23
Alignment explanation
Indices: 675863--675917 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
675853 TGAAATGTAC
*
675863 TAATTTAATCT-TT-TAAAAATTA
1 TAATTTAAT-TATTGTAAAAAGTA
* *
675885 TAATTTTATTATTGTAAAAAGTG
1 TAATTTAATTATTGTAAAAAGTA
675908 TAATTTAATT
1 TAATTTAATT
675918 TCGGCATCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 1 0.04
22 10 0.37
23 16 0.59
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (23 bp):
TAATTTAATTATTGTAAAAAGTA
Found at i:679369 original size:3 final size:3
Alignment explanation
Indices: 679361--679397 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
679351 GGCTCATTCA
679361 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
679398 TTGAAAATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:683828 original size:22 final size:22
Alignment explanation
Indices: 683801--683843 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
683791 ATTTTCAAAT
683801 TTTAAAATATTT-TAATTATATC
1 TTTAAAATATTTAT-ATTATATC
*
683823 TTTAAATTATTTATATTATAT
1 TTTAAAATATTTATATTATAT
683844 AAATCAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTAAAATATTTATATTATATC
Found at i:683861 original size:22 final size:22
Alignment explanation
Indices: 683826--683867 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
683816 TTATATCTTT
*
683826 AAATTATTTATATTATATAAATC
1 AAATCATTTATATTAT-TAAATC
683849 AAATCATTT-TATTATTAAA
1 AAATCATTTATATTATTAAA
683868 AATGTTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 6 0.33
23 8 0.44
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATCATTTATATTATTAAATC
Found at i:684054 original size:15 final size:15
Alignment explanation
Indices: 684036--684064 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
684026 TTTAAATTTT
684036 AAAATTTTTAAAATC
1 AAAATTTTTAAAATC
684051 AAAATTTTTAAAAT
1 AAAATTTTTAAAAT
684065 ATTTTATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
AAAATTTTTAAAATC
Found at i:697644 original size:6 final size:6
Alignment explanation
Indices: 697606--697636 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
697596 TCTTCTTCTC
697606 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T
1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T
697637 TCCATTTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (6 bp):
TCCCTT
Found at i:697702 original size:17 final size:18
Alignment explanation
Indices: 697664--697702 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
697654 TTCCGTTCGT
*
697664 CCCCTGACCTAACCCTAA
1 CCCCTGACCGAACCCTAA
*
697682 CCCCTGATCGAACCC-AA
1 CCCCTGACCGAACCCTAA
697699 CCCC
1 CCCC
697703 AAACCTCCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.26, C:0.54, G:0.08, T:0.13
Consensus pattern (18 bp):
CCCCTGACCGAACCCTAA
Found at i:703275 original size:6 final size:6
Alignment explanation
Indices: 703264--703295 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
703254 GGTTGGCAAT
703264 GAATTG GAATTG GAATTG GAATTG GAATTG GA
1 GAATTG GAATTG GAATTG GAATTG GAATTG GA
703296 TCACCCTCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (6 bp):
GAATTG
Found at i:706908 original size:36 final size:36
Alignment explanation
Indices: 706855--706947 Score: 132
Period size: 36 Copynumber: 2.6 Consensus size: 36
706845 TGGAATCAGA
*
706855 CGGAGGCGGAGGAGGAGATGGAGTCCCGGAACTCCT
1 CGGAGGCGGAGGAGGAGATGGAGTACCGGAACTCCT
* * *
706891 CGGAGGCGGTGGTGGAGATGCAGTACCGGAACTCCT
1 CGGAGGCGGAGGAGGAGATGGAGTACCGGAACTCCT
* *
706927 CGGTGGCGGAGGCGGAGATGG
1 CGGAGGCGGAGGAGGAGATGG
706948 TGTTGATGAG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.19, C:0.20, G:0.47, T:0.13
Consensus pattern (36 bp):
CGGAGGCGGAGGAGGAGATGGAGTACCGGAACTCCT
Found at i:707106 original size:24 final size:24
Alignment explanation
Indices: 707042--707107 Score: 105
Period size: 24 Copynumber: 2.8 Consensus size: 24
707032 GGATGAAGGC
* * *
707042 GGAGGTGATGAAGTGGAAGGAGGA
1 GGAGGGGATGGAGTGGTAGGAGGA
707066 GGAGGGGATGGAGTGGTAGGAGGA
1 GGAGGGGATGGAGTGGTAGGAGGA
707090 GGAGGGGATGGAGTGGTA
1 GGAGGGGATGGAGTGGTA
707108 ACGGGTGGTG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.27, C:0.00, G:0.59, T:0.14
Consensus pattern (24 bp):
GGAGGGGATGGAGTGGTAGGAGGA
Found at i:709063 original size:16 final size:16
Alignment explanation
Indices: 709044--709074 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
709034 AATATAAAAG
709044 TTTAATAATGTGACAC
1 TTTAATAATGTGACAC
*
709060 TTTAATATTGTGACA
1 TTTAATAATGTGACA
709075 TATCATCTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (16 bp):
TTTAATAATGTGACAC
Found at i:710773 original size:41 final size:41
Alignment explanation
Indices: 710717--710799 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
710707 TTTTATGGTA
*
710717 AAAATATGATTGAGTCTAGTTTCAAAAACATCAAGCAGATT
1 AAAAGATGATTGAGTCTAGTTTCAAAAACATCAAGCAGATT
*
710758 AAAAGATGATTGAGTCTAGTTTCAAAAACATCAAGCGGATT
1 AAAAGATGATTGAGTCTAGTTTCAAAAACATCAAGCAGATT
710799 A
1 A
710800 TAATTTCGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (41 bp):
AAAAGATGATTGAGTCTAGTTTCAAAAACATCAAGCAGATT
Found at i:726382 original size:3 final size:3
Alignment explanation
Indices: 726370--726401 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
726360 TAATAATAAT
*
726370 AAG AAT AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
726402 AAGTCTATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.03
Consensus pattern (3 bp):
AAG
Found at i:727453 original size:74 final size:74
Alignment explanation
Indices: 727332--727473 Score: 221
Period size: 74 Copynumber: 1.9 Consensus size: 74
727322 CGGCGGCGAA
* * *
727332 ATGGGTGGATGGCAAATGGTAAGAAGCATCAATACGTACACAAAGAGTGACTGATAGTTGAAAAA
1 ATGGGTGGATGCCAAATGATAAGAAGCATCAATACGTACACAAAGAGTGACTGATACTTGAAAAA
727397 TAACTACAC
66 TAACTACAC
* * * *
727406 ATGGGTGGATGCCAAATGATAAGAAGCATGAATTCGTATACAAAGAGTGACTGATACTTGACAAA
1 ATGGGTGGATGCCAAATGATAAGAAGCATCAATACGTACACAAAGAGTGACTGATACTTGAAAAA
727471 TAA
66 TAA
727474 TTACGCACTG
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 61 1.00
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.22
Consensus pattern (74 bp):
ATGGGTGGATGCCAAATGATAAGAAGCATCAATACGTACACAAAGAGTGACTGATACTTGAAAAA
TAACTACAC
Found at i:739112 original size:7 final size:7
Alignment explanation
Indices: 739100--739127 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
739090 TTCTTTGTAA
739100 ATTTAAT
1 ATTTAAT
739107 ATTTAAT
1 ATTTAAT
739114 ATTTAAT
1 ATTTAAT
739121 ATTTAAT
1 ATTTAAT
739128 TTTTTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTTAAT
Found at i:739139 original size:21 final size:21
Alignment explanation
Indices: 739100--739165 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
739090 TTCTTTGTAA
*
739100 ATTTAATATTTAATATTTAAT
1 ATTTAATATTTAATTTTTAAT
* * *
739121 ATTTAATTTTTTATTTTTATAA
1 ATTTAATATTTAATTTTTA-AT
* *
739143 ATTTAA-CTTTAATTGTTAAT
1 ATTTAATATTTAATTTTTAAT
739163 ATT
1 ATT
739166 ATTGAATTTG
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
20 4 0.11
21 25 0.69
22 7 0.19
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
ATTTAATATTTAATTTTTAAT
Found at i:746829 original size:224 final size:224
Alignment explanation
Indices: 746439--746891 Score: 906
Period size: 224 Copynumber: 2.0 Consensus size: 224
746429 GGTGCATTTG
746439 TTTTCAAATCTTGAATCTCATGTGCTTAGGTATTCATCATTCATGGCTATCCAATTAAATTAAAA
1 TTTTCAAATCTTGAATCTCATGTGCTTAGGTATTCATCATTCATGGCTATCCAATTAAATTAAAA
746504 TATGTTCAATGTATTTGTACTACATTTTAAATCTAATCATTCTACGTAAAAAATTAACCTTTACT
66 TATGTTCAATGTATTTGTACTACATTTTAAATCTAATCATTCTACGTAAAAAATTAACCTTTACT
746569 CTTTTATTTTAAAAAAATAAATCTTCAATTCTCAAAATAAAAAAATAAAAAAATCTTCACTTTTT
131 CTTTTATTTTAAAAAAATAAATCTTCAATTCTCAAAATAAAAAAATAAAAAAATCTTCACTTTTT
746634 GAATTTTAAAAAGTAAATTCAATTATCAA
196 GAATTTTAAAAAGTAAATTCAATTATCAA
746663 TTTTCAAATCTTGAATCTCATGTGCTTAGGTATTCATCATTCATGGCTATCCAATTAAATTAAAA
1 TTTTCAAATCTTGAATCTCATGTGCTTAGGTATTCATCATTCATGGCTATCCAATTAAATTAAAA
746728 TATGTTCAATGTATTTGTACTACATTTTAAATCTAATCATTCTACGTAAAAAATTAACCTTTACT
66 TATGTTCAATGTATTTGTACTACATTTTAAATCTAATCATTCTACGTAAAAAATTAACCTTTACT
746793 CTTTTATTTTAAAAAAATAAATCTTCAATTCTCAAAATAAAAAAATAAAAAAATCTTCACTTTTT
131 CTTTTATTTTAAAAAAATAAATCTTCAATTCTCAAAATAAAAAAATAAAAAAATCTTCACTTTTT
746858 GAATTTTAAAAAGTAAATTCAATTATCAA
196 GAATTTTAAAAAGTAAATTCAATTATCAA
746887 TTTTC
1 TTTTC
746892 CTCAGTTAAA
Statistics
Matches: 229, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
224 229 1.00
ACGTcount: A:0.40, C:0.14, G:0.06, T:0.40
Consensus pattern (224 bp):
TTTTCAAATCTTGAATCTCATGTGCTTAGGTATTCATCATTCATGGCTATCCAATTAAATTAAAA
TATGTTCAATGTATTTGTACTACATTTTAAATCTAATCATTCTACGTAAAAAATTAACCTTTACT
CTTTTATTTTAAAAAAATAAATCTTCAATTCTCAAAATAAAAAAATAAAAAAATCTTCACTTTTT
GAATTTTAAAAAGTAAATTCAATTATCAA
Found at i:747435 original size:21 final size:19
Alignment explanation
Indices: 747410--747450 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
747400 AAAAATGGAG
*
747410 GAAGAAAGCCACAGCATCAAA
1 GAAGAAA-CCACA-AATCAAA
747431 GAAGAAACCACAAATCAAA
1 GAAGAAACCACAAATCAAA
747450 G
1 G
747451 GCAGGTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 5 0.26
21 7 0.37
ACGTcount: A:0.56, C:0.22, G:0.17, T:0.05
Consensus pattern (19 bp):
GAAGAAACCACAAATCAAA
Found at i:753634 original size:21 final size:20
Alignment explanation
Indices: 753603--753661 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
753593 GAATTTAGTT
753603 TTTATATTTTTATTTATAGAAA
1 TTTA-ATTTTTATTTATA-AAA
753625 TTTAATTTTTTTATTT-TAAAA
1 TTTAA--TTTTTATTTATAAAA
* *
753646 TTTAAGTTTAATTTAT
1 TTTAATTTTTATTTAT
753662 TAATAAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
19 7 0.22
20 1 0.03
21 9 0.28
22 6 0.19
23 9 0.28
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTAATTTTTATTTATAAAA
Found at i:753639 original size:23 final size:21
Alignment explanation
Indices: 753609--753650 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
753599 AGTTTTTATA
753609 TTTTTATTTATAGAAATTTAATT
1 TTTTTATTT-TA-AAATTTAATT
753632 TTTTTATTTTAAAATTTAA
1 TTTTTATTTTAAAATTTAA
753651 GTTTAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 8 0.42
22 2 0.11
23 9 0.47
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTTATTTTAAAATTTAATT
Found at i:753660 original size:23 final size:21
Alignment explanation
Indices: 753611--753679 Score: 59
Period size: 23 Copynumber: 3.1 Consensus size: 21
753601 TTTTTATATT
*
753611 TTTATTTATAGAAATTTAATTTT
1 TTTATTT-TA-AAATTTAATTTA
753634 TTTATTTTAAAATTTAAGTTTAA
1 TTTATTTTAAAATTTAA-TTT-A
* *
753657 TTTATTAATAAAA-TTATTTTA
1 TTTATT-TTAAAATTTAATTTA
753678 TT
1 TT
753680 AAATTTATTC
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
21 11 0.28
22 8 0.20
23 16 0.40
24 5 0.12
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (21 bp):
TTTATTTTAAAATTTAATTTA
Found at i:753710 original size:26 final size:24
Alignment explanation
Indices: 753652--753715 Score: 58
Period size: 26 Copynumber: 2.5 Consensus size: 24
753642 AAAATTTAAG
753652 TTTAATTTATTAATAAAATTATTT
1 TTTAATTTATTAATAAAATTATTT
*
753676 TATTAAATTTATTCATTACAAATGT-TTT
1 T-TT-AATTTATT-AATA-AAAT-TATTT
753704 TTTAATTATATT
1 TTTAATT-TATT
753716 GCCATTAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
24 1 0.03
25 2 0.06
26 12 0.36
27 9 0.27
28 8 0.24
29 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.58
Consensus pattern (24 bp):
TTTAATTTATTAATAAAATTATTT
Found at i:753950 original size:22 final size:22
Alignment explanation
Indices: 753923--753972 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
753913 GTTTAACTAT
753923 AAAAAA-GTAAAAAAAAAAAAAA
1 AAAAAACG-AAAAAAAAAAAAAA
* **
753945 AAAAAACGAATAAAAGTAAAAA
1 AAAAAACGAAAAAAAAAAAAAA
753967 AAAAAA
1 AAAAAA
753973 TTATTTAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 23 0.96
23 1 0.04
ACGTcount: A:0.86, C:0.02, G:0.06, T:0.06
Consensus pattern (22 bp):
AAAAAACGAAAAAAAAAAAAAA
Found at i:759259 original size:23 final size:23
Alignment explanation
Indices: 759189--759246 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
759179 TAACGCAAAT
* * *
759189 CAGTAGGCACATGAGGTGCGAAA
1 CAGTAAGCACACGAAGTGCGAAA
759212 CAGTAAGCACACGAAGTGCGAAA
1 CAGTAAGCACACGAAGTGCGAAA
759235 CAGTAAGCACAC
1 CAGTAAGCACAC
759247 ACAGTGCTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.40, C:0.22, G:0.28, T:0.10
Consensus pattern (23 bp):
CAGTAAGCACACGAAGTGCGAAA
Found at i:759366 original size:24 final size:26
Alignment explanation
Indices: 759328--759375 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
759318 TCTACATAGA
759328 CATAATCTCTCATAT-TCATCATTTCT
1 CATAATCTCTCATATATCA-CATTTCT
759354 CATAAT-T-TCATATATCACATTT
1 CATAATCTCTCATATATCACATTT
759376 ACATTTCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 11 0.52
25 4 0.19
26 6 0.29
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (26 bp):
CATAATCTCTCATATATCACATTTCT
Found at i:759558 original size:12 final size:12
Alignment explanation
Indices: 759541--759567 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
759531 TCTTACTTTT
759541 ATTTTCACATTA
1 ATTTTCACATTA
759553 ATTTTCACATTA
1 ATTTTCACATTA
759565 ATT
1 ATT
759568 ATTTATTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTTTCACATTA
Found at i:762970 original size:12 final size:12
Alignment explanation
Indices: 762937--762970 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
762927 TGAGCCTCTG
*
762937 TTCTTTCTTCTT
1 TTCTTTCTTTTT
*
762949 TTGTTTCTTTTT
1 TTCTTTCTTTTT
762961 TTCTTTCTTT
1 TTCTTTCTTT
762971 ATTCTTTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (12 bp):
TTCTTTCTTTTT
Done.