Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000154.1 Kokia drynarioides strain JFW-HI SEQ_110816, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 783

Length: 1305
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38


Found at i:966 original size:20 final size:20

Alignment explanation


    Indices: 937--988  Score: 70
    Period size: 20  Copynumber: 2.6  Consensus size: 20

        927 AAATTTTACG

                            *    
        937 AAATAATTATTAAATTGTTCA
          1 AAATAATTATTAAATTATT-A

                       *        
        958 AAA-AATTATTTAATTATTA
          1 AAATAATTATTAAATTATTA

                        
        977 AAATAATTATTA
          1 AAATAATTATTA

        989 TATAATTTTT


Statistics
Matches: 27,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  19    4  0.15
  20   20  0.74
  21    3  0.11

ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44


Consensus pattern (20 bp):   
AAATAATTATTAAATTATTA
Done.