Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001542.1 Kokia drynarioides strain JFW-HI SEQ_113117, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2701
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.38


Found at i:1023 original size:19 final size:20

Alignment explanation


    Indices: 987--1033  Score: 62
    Period size: 20  Copynumber: 2.4  Consensus size: 20

        977 AAAACTTACA

                   *            
        987 AAAAATTTAAAATAATTT-T
          1 AAAAATTCAAAATAATTTAT

                                 
       1006 CAAAAATTCAAAAT-ATTTAT
          1 -AAAAATTCAAAATAATTTAT

                    
       1026 AAAAATTC
          1 AAAAATTC

       1034 TAATTTTTTT


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  19   12  0.48
  20   13  0.52

ACGTcount: A:0.57, C:0.06, G:0.00, T:0.36


Consensus pattern (20 bp):   
AAAAATTCAAAATAATTTAT
Done.