Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001549.1 Kokia drynarioides strain JFW-HI SEQ_113130, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 885

Length: 1475
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33


Found at i:740 original size:10 final size:10

Alignment explanation


    Indices: 725--756  Score: 64
    Period size: 10  Copynumber: 3.2  Consensus size: 10

        715 GGTTTACTTA

                      
        725 CTGAGTTTTT
          1 CTGAGTTTTT

                      
        735 CTGAGTTTTT
          1 CTGAGTTTTT

                      
        745 CTGAGTTTTT
          1 CTGAGTTTTT

              
        755 CT
          1 CT

        757 TTGAATTGAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   22  1.00

ACGTcount: A:0.09, C:0.12, G:0.19, T:0.59


Consensus pattern (10 bp):   
CTGAGTTTTT
Done.