Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001551.1 Kokia drynarioides strain JFW-HI SEQ_113134, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1674
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34


Found at i:773 original size:49 final size:49

Alignment explanation


    Indices: 701--800  Score: 200
    Period size: 49  Copynumber: 2.0  Consensus size: 49

        691 CTAGAGAATA

                                                             
        701 GTAAGGGGAGTTGGAGGCACCATCTTGCACAAGTCGAGAAGGGTTCACG
          1 GTAAGGGGAGTTGGAGGCACCATCTTGCACAAGTCGAGAAGGGTTCACG

                                                             
        750 GTAAGGGGAGTTGGAGGCACCATCTTGCACAAGTCGAGAAGGGTTCACG
          1 GTAAGGGGAGTTGGAGGCACCATCTTGCACAAGTCGAGAAGGGTTCACG

              
        799 GT
          1 GT

        801 CTTAGTTCGC


Statistics
Matches: 51,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  49   51  1.00

ACGTcount: A:0.26, C:0.18, G:0.37, T:0.19


Consensus pattern (49 bp):   
GTAAGGGGAGTTGGAGGCACCATCTTGCACAAGTCGAGAAGGGTTCACG
Done.