Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001553.1 Kokia drynarioides strain JFW-HI SEQ_113140, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 794

Length: 1324
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30


Found at i:618 original size:21 final size:21

Alignment explanation


    Indices: 571--619  Score: 71
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        561 AATAGTGTAG

                                 
        571 ACTTCTAACGATACAAGTGTC
          1 ACTTCTAACGATACAAGTGTC

             *     *             
        592 AATTCTACCGATACAAGTGTC
          1 ACTTCTAACGATACAAGTGTC

            *      
        613 TCTTCTA
          1 ACTTCTA

        620 TAAAAACAAG


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33


Consensus pattern (21 bp):   
ACTTCTAACGATACAAGTGTC
Done.