Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001557.1 Kokia drynarioides strain JFW-HI SEQ_113151, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5518
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31


Found at i:1540 original size:3 final size:3

Alignment explanation


    Indices: 1532--1564  Score: 57
    Period size: 3  Copynumber: 11.0  Consensus size: 3

       1522 GGACCCTAAA

                                    *                  
       1532 AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT AAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT

       1565 TTGAGTTCTT


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33


Consensus pattern (3 bp):   
AAT

Done.