Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001561.1 Kokia drynarioides strain JFW-HI SEQ_113156, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4731
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33


Found at i:2536 original size:6 final size:6

Alignment explanation


    Indices: 2525--2552  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

       2515 GAAAGGAAAC

                                            
       2525 AATGAG AATGAG AATGAG AATGAG AATG
          1 AATGAG AATGAG AATGAG AATGAG AATG

       2553 TGGATGCAGG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.50, C:0.00, G:0.32, T:0.18


Consensus pattern (6 bp):   
AATGAG

Done.