Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001564.1 Kokia drynarioides strain JFW-HI SEQ_113162, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2405
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31


Found at i:2077 original size:12 final size:13

Alignment explanation


    Indices: 2038--2079  Score: 52
    Period size: 13  Copynumber: 3.3  Consensus size: 13

       2028 TTTCCTGGAC

                          
       2038 ATAAAATA-AATAA
          1 ATAAAATAGAA-AA

                         
       2051 ATAAAATAGAAAA
          1 ATAAAATAGAAAA

                    *    
       2064 ATAAAA-ATAAAA
          1 ATAAAATAGAAAA

                
       2076 ATAA
          1 ATAA

       2080 TTGGGTTGCC


Statistics
Matches: 27,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  12    9  0.33
  13   16  0.59
  14    2  0.07

ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19


Consensus pattern (13 bp):   
ATAAAATAGAAAA
Done.