Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001567.1 Kokia drynarioides strain JFW-HI SEQ_113167, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15381
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36

Warning! 67 characters in sequence are not A, C, G, or T


Found at i:3104 original size:2 final size:2

Alignment explanation


    Indices: 3097--3125  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       3087 GACCCGTGCT

                                                       
       3097 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       3126 TGATGAATCA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:6863 original size:15 final size:16

Alignment explanation


    Indices: 6838--6870  Score: 50
    Period size: 15  Copynumber: 2.1  Consensus size: 16

       6828 ATAATTTATA

                       *    
       6838 ATAATTAATTTTAATG
          1 ATAATTAATTTGAATG

                            
       6854 ATAATT-ATTTGAATG
          1 ATAATTAATTTGAATG

              
       6869 AT
          1 AT

       6871 TGGTATTTGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  15   10  0.62
  16    6  0.38

ACGTcount: A:0.42, C:0.00, G:0.09, T:0.48


Consensus pattern (16 bp):   
ATAATTAATTTGAATG
Done.