Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001577.1 Kokia drynarioides strain JFW-HI SEQ_113182, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2729
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33


Found at i:440 original size:5 final size:5

Alignment explanation


    Indices: 425--454  Score: 51
    Period size: 5  Copynumber: 6.0  Consensus size: 5

        415 TCCCTTAAAT

                   *                           
        425 CCAAC CTAAC CCAAC CCAAC CCAAC CCAAC
          1 CCAAC CCAAC CCAAC CCAAC CCAAC CCAAC

        455 ATTCTCTAAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   5   23  1.00

ACGTcount: A:0.40, C:0.57, G:0.00, T:0.03


Consensus pattern (5 bp):   
CCAAC

Done.