Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001579.1 Kokia drynarioides strain JFW-HI SEQ_113184, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1671
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30


Found at i:1416 original size:15 final size:15

Alignment explanation


    Indices: 1396--1429  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       1386 CGTGTGTGTC

                   *       
       1396 CGCAACATAAGTGCT
          1 CGCAACACAAGTGCT

                    *      
       1411 CGCAACACCAGTGCT
          1 CGCAACACAAGTGCT

                
       1426 CGCA
          1 CGCA

       1430 TCTTCCAAGC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15


Consensus pattern (15 bp):   
CGCAACACAAGTGCT
Done.