Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01001592.1 Kokia drynarioides strain JFW-HI SEQ_113207, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3314
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Found at i:685 original size:216 final size:215
Alignment explanation
Indices: 1--3314 Score: 2628
Period size: 216 Copynumber: 15.7 Consensus size: 215
* *
1 AAAGA-CAAAACTTGTTTACAAAATGACAAACAATTTAGA-AAAATGATGCGATTTTTCGAGCAT
1 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTCCGAGCAT
* * * * * * * *
64 AGAATGTTAAGAGAGTTGCTCTAAGGAATGTATCATCTTGAATACTGTAAGGAACTGAAGTTATA
66 GGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAATTATA
* * * * * *
129 GAAGAACGCGTAAAAGTTTGACAAGTTCGAAAGTTTGTCCAAGAAC-CAAGCGAAACAATTCTCA
131 GAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCGTCCAAGAACAAAAGAGAAACAATTCTCA
*
193 CGTAAATAAGTTTTTGATTC
196 CGTAAATAAGTTTTTAATTC
* * * * * * *
213 AAAGACCAAAACTTGTTTTCAAAATGACAAACTCTTTAGACCAAATGCTGCTA-TTTCTCAAGAA
1 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTC-CGAGCA
* * * * *
277 TCGAACGTTCAGAAAATTGTTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGA-TA
65 TGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAA-ATTA
* * ** *
341 T-GAAAGAACACTCGTAAAAGTTTGACT-AGTTTGAAAGTTAATCCGAGAACCAAAAGAGAAAAC
129 TAG-AAG-A-ACTCGTAAAAGTTTGA-TAAGTTCGGAAGTTCGTCCAAGAA-CAAAAGAG-AAAC
404 AATTCTCACGTAAATAAGTTTTTAATTC
188 AATTCTCACGTAAATAAGTTTTTAATTC
* * * * *
432 AAACAACAAAACCTT-CTAACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA
1 AAAGACCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTCCGAGCA
* * * *
496 TGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATGCTTTATGGAACTGAAATTAT
65 TGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAATTAT
* * *
561 AGAAGAACTCATAAAAGTTTGATAAGTTCAGAAGTTCGTCCAAAAACTAAAAGAGAAACAATTCT
130 AGAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCGTCCAAGAAC-AAAAGAGAAACAATTCT
* *
626 CGCGTAAATAAGTATTTAATTC
194 CACGTAAATAAGTTTTTAATTC
* * * * * *
648 AAAGACCAAAAGTTGTTCACAAAATGACAAGCTATTTAGGCAAAATTATGCGATTTCCCGAGCAT
1 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTCCGAGCAT
* * * *
713 GGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATGCTTTATGGAACTGAAATTATA
66 GGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAATTATA
* * * *
778 GAAGTACTCATAAAAGTTTGATAAGTTCAGAAGTTCGTCCAAGAACTAAAAGAGAAACAATTCTT
131 GAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCGTCCAAGAAC-AAAAGAGAAACAATTCTC
* *
843 GCGTAAATAAGTATTTAATTC
195 ACGTAAATAAGTTTTTAATTC
* * * * * *
864 AAAGACCAAAAGTTGTTCACAAAATGACAAGCTATTTAGGCAAAATTATGCGA-TTTCTCGAGTA
1 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTC-CGAGCA
* * * **
928 TGGAATGTTCAGAAAATAGCTCGAAGGAATGGATCATCTTG---A----AA-GAACCG-AGTCGT
65 TGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAATTAT
* * * * ** * ****
984 --AA-AAGT-TTAAAAAG-TTCAGAAGTTCATCCAA---CAG-CCAAGAGA-AACA-ATTCCCAA
130 AGAAGAACTCGT-AAAAGTTTGATAAGTTC--GGAAGTTC-GTCCAAGA-ACAAAAGAGAAACAA
* ** * ** * **
1038 --GT-AAATAAGTTTTTGTTTTAAAGACC
190 TTCTCACGTAA--ATAAGTTTTTAA-TTC
**** **** * * ** *
1064 AAA-A-C-TTGTTTACAAAACGAAAA--A----CTATTTAGACTAAATGATGCAATTACCCGAGA
1 AAAGACCAAAACTT-GTTTAC-AAAATGACAAACTATTTAGACAAAATGATGCGATTTTCCGAGC
* * ** * ***
1120 AAGGAATGTTCA-A-AATTGCT-AAAGGAATGGATGTTATTGAATACTTTAAGGAA-TCGTTGTT
64 ATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACT-GAAATT
* * * * *
1181 ATAAAAGAACTCGTAAAGGTTTGAAAAGTTTC-GAAGTTCATCCATGAACAAAGAGAGAGAAACA
128 ATAGAAGAACTCGTAAAAGTTTGATAAG-TTCGGAAGTTCGTCCAAGAAC-AA-A-AGAGAAACA
* *
1245 ATTCTCACTTAAATAAGTTTTTAATTT
189 ATTCTCACGTAAATAAGTTTTTAATTC
* * * *
1272 AAAGA-CAAAACTTGTTTACAAAATGGCAAACAATTTAGA-AAAATGATGTGATATTT-CGAACA
1 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGAT-TTTCCGAGCA
* * * * * * *
1334 TAGAACGTTAAGAAAATTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAACTGAAGTTAT
65 TGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAATTAT
* * * * * * *
1399 AAAAGAACGCGTAAAAGTTTGACAAGTTCGAAAGTTTGTCCAAGAAC-CAAGCGAAACAATTCTC
130 AGAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCGTCCAAGAACAAAAGAGAAACAATTCTC
* *
1463 GCGTAAATAAGTTTTTGATTC
195 ACGTAAATAAGTTTTTAATTC
* * * * * *
1484 AAAGACCAAAAC-----T-----ATGACAAACTCTTTAGACCAAATGCTGCTA-TTTCTCAAGAA
1 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTC-CGAGCA
* * * * *
1538 TCGAACGTTCAGAAAATTGTTCGAAGGAATGGATTATCTTGAATACTTTAAGGAACCGAAGA-TA
65 TGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAA-ATTA
* * *
1602 T-GAAAGAACTCGTAAAAGTTTGACT-AGTTCGAAAGTTCGTCCGAGAACCAAGAGAGAAAACAA
129 TAG-AAGAACTCGTAAAAGTTTGA-TAAGTTCGGAAGTTCGTCCAAGAA-CAAAAGAG-AAACAA
* * *
1665 TACTCTCGTAAATAAGTTTATAATTC
190 TTCTCACGTAAATAAGTTTTTAATTC
* * * **
1691 AAACAACAAAACCTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGAACTTCCGAGCA
1 AAAGACCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTCCGAGCA
* * * * * *
1755 TGGAATGCTC-GAAAAATTGCTCGAAGGAATGGATCGTCTGGAATGCTTTATGGAACTGAAAATA
65 TGGAATGTTCAG-AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAATTA
* * *
1819 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACTAAAAGAGAAACAATTC
129 TAGAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCGTCCAAGAAC-AAAAGAGAAACAATTC
* *
1884 TCGCGTAAATAAGTATTTAATTC
193 TCACGTAAATAAGTTTTTAATTC
* * * *
1907 AAAGACCAAAAGTTGTTCACAAAATGACAAACTATTTAGACAAAATTATGCGA-TTTCTCGAGTA
1 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTC-CGAGCA
* * *
1971 TGGAATGTTTAGAAAATAGCTCGAAGGAATGGATTATCTTGAATA-TTGTAAGGAAC--------
65 TGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTT-TAAGGAACTGAAATTA
* * * * * * * * * *
2027 --CAAG---TCGTAAAAATATAAAAAGTTCGGAAGTTCATACAACAGC-CAAGAGAAACAATTCT
129 TAGAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCGTCCAAGAACAAAAGAGAAACAATTCT
*** *
2086 CACGTAAATAAGTTTTCGCTTT
194 CACGTAAATAAGTTTTTAATTC
* * * * ** * * *
2108 AAAGACCAAAATTTGTTTTCAAAATGACAAACTCTTTAGACCAAATTCTGCTA-TTTCTCAAGAA
1 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTC-CGAGCA
* * * *
2172 TCGAACGTTCAGAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGA-TA
65 TGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAA-ATTA
* * * *
2236 T-GAAAGAACTCGTAAAAGTTTAACT-AGTTCGAAAGTTCGTCCGAGAACCAAGAGAGAAAACAA
129 TAG-AAGAACTCGTAAAAGTTTGA-TAAGTTCGGAAGTTCGTCCAAGAA-CAAAAGAG-AAACAA
*
2299 TTCTCATGTAAATAAGTTTTTAATTC
190 TTCTCACGTAAATAAGTTTTTAATTC
* * * * * * *
2325 AAACAACAAAACCTT-CTAACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCA
1 AAAGACCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTCCGAGCA
* * *
2389 TGGAATGTTC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATGCTTTACGGAACTGAAATTA
65 TGGAATGTTCAG-AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAATTA
* * *
2453 TAGAAGAACTCATAAAAGTTAGATAAGTTTGGAAGTTCGTCCAAGAACTAAAAGAGAAACAATTC
129 TAGAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCGTCCAAGAAC-AAAAGAGAAACAATTC
* *
2518 TCGCGTAAATAAGTATTTAATTC
193 TCACGTAAATAAGTTTTTAATTC
* * * * * * *
2541 AAAGACGAAAAGTTGTTCACAAAAAGACAAACTATTTAGACAAAATTATGCGATTTCCCGAGTAT
1 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTCCGAGCAT
*
2606 GGAATGTTCAGAAAATAGCTCGAAGGAATGGATCATCTTGAATA-TTGTAAGGAAC---------
66 GGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTT-TAAGGAACTGAAATTAT
* * * * * * *
2661 CG-AG---TCGTAAAAGTTTAAAAAGTTCGGAAGTTCATCCAACAGC-CAAGAGAAACAATTCTC
130 AGAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCGTCCAAGAACAAAAGAGAAACAATTCTC
** *
2721 ACGTAAATAAGTTTTTGCTTT
195 ACGTAAATAAGTTTTTAATTC
* ** * * * ** *
2742 AATGACCAAAACTTGTTTACAAAACAAAAAATTATTTAGACTAAATGATGCGATTACCCGAGAAT
1 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTCCGAGCAT
** * * *
2807 GGAATGTTC--AAAATTGCT-GAAAGGAATGGATGTTCTTGAATACTTCAAGGAAC-CAGAGTTA
66 GGAATGTTCAGAAAATTGCTCG-AAGGAATGGATCATCTTGAATACTTTAAGGAACTGA-AATTA
* * * *
2868 TAAAAGAACTCGTAAAGGTTTGAAAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAGAAACAAT
129 TAGAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCGTCCAAGAAC-AA-A-AGAGAAACAAT
*
2933 TCTCACGTAAATAAGTTTATAAATT-
191 TCTCACGTAAATAAGTTT-TTAATTC
* * *
2958 AAAGA-CAAAACTTGTTTACAAAATGACAAACAATTTAGA-AAAATGATGCGATTTTTCAAGCAT
1 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTCCGAGCAT
* * * * * * *
3021 AGAATGTTAAGAAAGTTGCTCGAAGGAATGTATCTTCTTGAATACTGTAAGGAACTGAAGTTATA
66 GGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAATTATA
* * * * *
3086 AAAGAA-TGCGTAAAAGTTTGACAAGTTCGGAAGTTTGTCCAAGAAC-CAAGCGAAACAATTCTC
131 GAAGAACT-CGTAAAAGTTTGATAAGTTCGGAAGTTCGTCCAAGAACAAAAGAGAAACAATTCTC
* *
3149 ACGTAAATAAGATTTTGATTC
195 ACGTAAATAAGTTTTTAATTC
* * * * * * *
3170 AAAGACCAAAACTTGTTTTCAAAATGACAAACTCTTTAGACCAAATGCTGCTA-TTTCTCAAGAA
1 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTC-CGAGCA
* * * * *
3234 TCGAACGTTCAGAAAATTGTTCGAAGGAATGAATCATCTTGAATACTTTAAGGAACCGAAGA-TA
65 TGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAA-ATTA
3298 T-GAAAGAACTCGTAAAA
129 TAG-AAGAACTCGTAAAA
Statistics
Matches: 2485, Mismatches: 455, Indels: 322
0.76 0.14 0.10
Matches are distributed among these distances:
190 15 0.01
191 6 0.00
192 1 0.00
193 34 0.01
194 2 0.00
197 8 0.00
198 9 0.00
199 50 0.02
200 10 0.00
201 234 0.09
202 19 0.01
203 97 0.04
204 121 0.05
205 7 0.00
206 8 0.00
207 42 0.02
208 18 0.01
209 15 0.01
210 3 0.00
211 11 0.00
212 107 0.04
213 98 0.04
214 211 0.08
215 60 0.02
216 804 0.32
217 339 0.14
218 15 0.01
219 133 0.05
220 8 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (215 bp):
AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGCGATTTTCCGAGCAT
GGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAATTATA
GAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCGTCCAAGAACAAAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAATTC
Found at i:1128 original size:193 final size:191
Alignment explanation
Indices: 788--1151 Score: 424
Period size: 193 Copynumber: 1.9 Consensus size: 191
778 GAAGTACTCA
* * * * ****
788 TAAAAGTTTGATAAGTTCAGAAGTTCGTCCAAGAACTAAAAGAGAAACAATTCTTGCGTAAATAA
1 TAAAAGTTTAAAAAGTTCAGAAGTTCATCCAACAAC-AAAAGAGAAACAATTCCCAAGTAAATAA
* * * * * * *
853 GTATTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAGCTATTTAGGCAAAATTATGCGAT
65 GTATTTAATTCAAAGACCAAAACTTGTTCACAAAACGAAAAACTATTTAGACAAAATGATGCAAT
* * * * *
918 TTCTCGAGTATGGAATGTTCAGAAAATAGCTCGAAGGAATGGATCATCTTGAAAGAACCGAGTCG
130 TACCCGAGAAAGGAATGTTC--AAAATAGCT-AAAGGAATGGATCATCTTGAAAGAACCGAGTCG
* *
983 TAAAAGTTTAAAAAGTTCAGAAGTTCATCCAACAGC-CAAGAGAAACAATTCCCAAGTAAATAAG
1 TAAAAGTTTAAAAAGTTCAGAAGTTCATCCAACAACAAAAGAGAAACAATTCCCAAGTAAATAAG
* ** * * *
1047 TTTTTGTTTTAAAGACCAAAACTTGTTTACAAAACGAAAAACTATTTAGACTAAATGATGCAATT
66 TATTTAATTCAAAGACCAAAACTTGTTCACAAAACGAAAAACTATTTAGACAAAATGATGCAATT
*
1112 ACCCGAGAAAGGAATGTTCAAAATTGCTAAAGGAATGGAT
131 ACCCGAGAAAGGAATGTTCAAAATAGCTAAAGGAATGGAT
1152 GTTATTGAAT
Statistics
Matches: 140, Mismatches: 29, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
190 11 0.08
191 8 0.06
193 90 0.64
195 31 0.22
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (191 bp):
TAAAAGTTTAAAAAGTTCAGAAGTTCATCCAACAACAAAAGAGAAACAATTCCCAAGTAAATAAG
TATTTAATTCAAAGACCAAAACTTGTTCACAAAACGAAAAACTATTTAGACAAAATGATGCAATT
ACCCGAGAAAGGAATGTTCAAAATAGCTAAAGGAATGGATCATCTTGAAAGAACCGAGTCG
Found at i:2176 original size:634 final size:631
Alignment explanation
Indices: 1--3290 Score: 3252
Period size: 634 Copynumber: 5.2 Consensus size: 631
* * * *
1 AAAGA-CAAAACTTGTTTACAAAATGACAAACAATTTAGA-AAAATGATGCGATTTTTCGAGCAT
1 AAAGACCAAAACTTGTTCACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCTCGAGTAT
* * * * * * * * * * **
64 AGAATGTTAAGAGAGTTGCTCTAAGGAATGTATCATCTTGAATACTGTAAGGAACTGAAGTTATA
66 GGAACGTTCAGAAAATAGCTCGAAGGAATGGATCATCTTGAATATTGTAAGGAAC-CAAGTCGTA
* * ** * * *
129 GAAGAACGCGTAAAAGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGCGAAACAATTCTCAC
130 -AA-AA----TATAA-----A-AAGTTCGGAAGTTCATCCAACAGCCAAGAGAAACAATTCTCAC
* *
194 GTAAATAAGTTTTTGATTCAAAGACCAAAACTTGTTTTCAAAATGACAAACTCTTTAGACCAAAT
183 GTAAATAAGTTTTTGCTTTAAAGACCAAAA-TTG-TTTCAAAATGACAAACTCTTTAGACCAAAT
* *
259 GCTGCTATTTCTCAAGAATCGAACGTTCAGAAAATTGTTTGAAGGAATGGATCATCTTGAATACT
246 GCTGCTATTTCTCAAGAATCGAACGTTCAGAAAATTGTTCGAAGGAATGGATTATCTTGAATACT
* **
324 TTAAGGAACCGAAGATATGAAAGAACACTCGTAAAAGTTTGACTAGTTTGAAAGTTAATCCGAGA
311 TTAAGGAACCGAAGATATGAAAG-A-ACTCGTAAAAGTTTGACTAGTTCGAAAGTTCGTCCGAGA
* * * * *
389 ACCAAAAGAGAAAACAATTCTCACGTAAATAAGTTTTTAATTCAAACAACAAAACCTTCTAACAA
374 ACCAAGAGAGAAAACAATTCTCTCGTAAATAAGTTTATAATTCAAACAACAAAACCTTTTTACAA
* *
454 AATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGGAAAATTGCTCG
439 AATGACAAACTATTTAGACCAAATGATGCGAATTTCCGAGCATGGAATG-TCGAAAAATTGCTCG
* * * *
519 AAGGAATGGATCGTCTTGAATGCTTTATGGAACTGAAATTATAGAAGAACTCATAAAAGTTTGAT
503 AAGGAATGGATCGTCTTGAATGCTTTAAGGAACTGAAATTATAAAAGAACTCGTAAAAGTTTGAC
* * * *
584 AAGTTCAGAAGTTCGTCCAAAAACTAAAAGAGAAACAATTCTCGCGTAAATAAGTATTTAATTC
568 AAGTTCGGAAGTTCATCCAAGAACTAAAAGAGAAACAATTCTCACGTAAATAAGTATTTAATTC
* * * * * *
648 AAAGACCAAAAGTTGTTCACAAAATGACAAGCTATTTAGGCAAAATTATGCGATTTCCCGAGCAT
1 AAAGACCAAAACTTGTTCACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCTCGAGTAT
* * * * * * * * **
713 GGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATGCTT-TATGGAACTGAAATTAT
66 GGAACGTTCAGAAAATAGCTCGAAGGAATGGATCATCTTGAAT-ATTGTAAGGAAC-CAAGTCGT
* * * * * *
777 AGAAGTACTCATAAAAGTTTGATAAGTTCAGAAGTTCGTCCAAGAACTAAAAGAGAAACAATTCT
129 A-AA--A---ATATAA-----A-AAGTTCGGAAGTTCATCCAACAGC--CAAGAGAAACAATTCT
** * ** * * * * * *
842 TGCGTAAATAAGTATTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAGCTATTTAGGCAA
180 CACGTAAATAAGTTTTTGCTTTAAAGACCAAAA-TTGTT-TCAAAATGACAAACTCTTTAGACCA
** * * * * * * * *
907 AATTATGCGATTTCTCGAGTATGGAATGTTCAGAAAATAGCTCGAAGGAATGGATCATCTTG---
243 AATGCTGCTATTTCTCAAGAATCGAACGTTCAGAAAATTGTTCGAAGGAATGGATTATCTTGAAT
* ** * *
969 A----AA-GAACC--------G--AG---TCGTAAAAGTTTAAAAAGTTC-AGAAGTTCATCCAA
308 ACTTTAAGGAACCGAAGATATGAAAGAACTCGTAAAAGTTTGACTAGTTCGA-AAGTTCGTCCGA
* * * ** * ** * * *
1015 CAGCC-A-AGAG-AAACAATTCCCAAGTAAATAAGTTTTTGTTTTAAAGACCAAAA-CTTGTTTA
372 GAACCAAGAGAGAAAACAATTCTCTCGTAAATAAGTTTATAATTCAAACAACAAAACCTT-TTTA
* * * * * *
1076 CAAAACGAAAAACTATTTAGACTAAATGATGC-AATTACCCGAGAAAGGAATGTTC--AAAATTG
436 CAAAATGACAAACTATTTAGACCAAATGATGCGAATT-TCCGAGCATGGAATG-TCGAAAAATTG
* * * *** *
1138 CT-AAAGGAATGGAT-GTTATTGAATACTTTAAGGAA-TCGTTGTTATAAAAGAACTCGTAAAGG
499 CTCGAAGGAATGGATCG-TCTTGAATGCTTTAAGGAACT-GAAATTATAAAAGAACTCGTAAAAG
* * * * *
1200 TTTGAAAAGTTTC-GAAGTTCATCCATGAACAAAGAGAGAGAAACAATTCTCACTTAAATAAGTT
562 TTTGACAAG-TTCGGAAGTTCATCCAAGAACTAA-A-AGAGAAACAATTCTCACGTAAATAAGTA
*
1264 TTTAATTT
624 TTTAATTC
* * * * **
1272 AAAGA-CAAAACTTGTTTACAAAATGGCAAACAATTTAGA-AAAATGATGTGATATT-TCGAACA
1 AAAGACCAAAACTTGTTCACAAAATGACAAACTATTTAGACAAAATGATGCGAT-TTCTCGAGTA
* * * * * * * **
1334 TAGAACGTTAAGAAAATTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAACTGAAGTTAT
65 TGGAACGTTCAGAAAATAGCTCGAAGGAATGGATCATCTTGAATATTGTAAGGAAC-CAAGTCGT
* * ** * * * *
1399 AAAAGAACGCGTAAAAGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGCGAAACAATTCTCG
129 -AAA-AA----TATAA-----A-AAGTTCGGAAGTTCATCCAACAGCCAAGAGAAACAATTCTCA
* * *
1464 CGTAAATAAGTTTTTGATTCAAAGACCAAAA------C--TATGACAAACTCTTTAGACCAAATG
182 CGTAAATAAGTTTTTGCTTTAAAGACCAAAATTGTTTCAAAATGACAAACTCTTTAGACCAAATG
1521 CTGCTATTTCTCAAGAATCGAACGTTCAGAAAATTGTTCGAAGGAATGGATTATCTTGAATACTT
247 CTGCTATTTCTCAAGAATCGAACGTTCAGAAAATTGTTCGAAGGAATGGATTATCTTGAATACTT
1586 TAAGGAACCGAAGATATGAAAGAACTCGTAAAAGTTTGACTAGTTCGAAAGTTCGTCCGAGAACC
312 TAAGGAACCGAAGATATGAAAGAACTCGTAAAAGTTTGACTAGTTCGAAAGTTCGTCCGAGAACC
*
1651 AAGAGAGAAAACAATACTCTCGTAAATAAGTTTATAATTCAAACAACAAAACCTTTTTACAAAAT
377 AAGAGAGAAAACAATTCTCTCGTAAATAAGTTTATAATTCAAACAACAAAACCTTTTTACAAAAT
*
1716 GACAAACTATTTAGACCAAATGATGCGAACTTCCGAGCATGGAATGCTCGAAAAATTGCTCGAAG
442 GACAAACTATTTAGACCAAATGATGCGAATTTCCGAGCATGGAATG-TCGAAAAATTGCTCGAAG
* * *
1781 GAATGGATCGTCTGGAATGCTTTATGGAACTGAAAATATAAAAGAACTCGTAAAAGTTTGACAAG
506 GAATGGATCGTCTTGAATGCTTTAAGGAACTGAAATTATAAAAGAACTCGTAAAAGTTTGACAAG
*
1846 TTCGGAAGTTCATCCAAGAACTAAAAGAGAAACAATTCTCGCGTAAATAAGTATTTAATTC
571 TTCGGAAGTTCATCCAAGAACTAAAAGAGAAACAATTCTCACGTAAATAAGTATTTAATTC
* *
1907 AAAGACCAAAAGTTGTTCACAAAATGACAAACTATTTAGACAAAATTATGCGATTTCTCGAGTAT
1 AAAGACCAAAACTTGTTCACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCTCGAGTAT
* * *
1972 GGAATGTTTAGAAAATAGCTCGAAGGAATGGATTATCTTGAATATTGTAAGGAACCAAGTCGTAA
66 GGAACGTTCAGAAAATAGCTCGAAGGAATGGATCATCTTGAATATTGTAAGGAACCAAGTCGTAA
*
2037 AAATATAAAAAGTTCGGAAGTTCATACAACAGCCAAGAGAAACAATTCTCACGTAAATAAGTTTT
131 AAATATAAAAAGTTCGGAAGTTCATCCAACAGCCAAGAGAAACAATTCTCACGTAAATAAGTTTT
* *
2102 CGCTTTAAAGACCAAAATTTGTTTTCAAAATGACAAACTCTTTAGACCAAATTCTGCTATTTCTC
196 TGCTTTAAAGACCAAAA-TTG-TTTCAAAATGACAAACTCTTTAGACCAAATGCTGCTATTTCTC
*
2167 AAGAATCGAACGTTCAGAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAA
259 AAGAATCGAACGTTCAGAAAATTGTTCGAAGGAATGGATTATCTTGAATACTTTAAGGAACCGAA
*
2232 GATATGAAAGAACTCGTAAAAGTTTAACTAGTTCGAAAGTTCGTCCGAGAACCAAGAGAGAAAAC
324 GATATGAAAGAACTCGTAAAAGTTTGACTAGTTCGAAAGTTCGTCCGAGAACCAAGAGAGAAAAC
* * * *
2297 AATTCTCAT-GTAAATAAGTTTTTAATTCAAACAACAAAACCTTCTAACAAAATGACAAAATATT
389 AATTCTC-TCGTAAATAAGTTTATAATTCAAACAACAAAACCTTTTTACAAAATGACAAACTATT
2361 TAGACCAAATGATGCG-ATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
453 TAGACCAAATGATGCGAATTT-CCGAGCATGGAATG-TCGAAAAATTGCTCGAAGGAATGGATCG
* * * * * *
2425 TCTTGAATGCTTTACGGAACTGAAATTATAGAAGAACTCATAAAAGTTAGATAAGTTTGGAAGTT
516 TCTTGAATGCTTTAAGGAACTGAAATTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* *
2490 CGTCCAAGAACTAAAAGAGAAACAATTCTCGCGTAAATAAGTATTTAATTC
581 CATCCAAGAACTAAAAGAGAAACAATTCTCACGTAAATAAGTATTTAATTC
* * * * *
2541 AAAGACGAAAAGTTGTTCACAAAAAGACAAACTATTTAGACAAAATTATGCGATTTCCCGAGTAT
1 AAAGACCAAAACTTGTTCACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCTCGAGTAT
* *
2606 GGAATGTTCAGAAAATAGCTCGAAGGAATGGATCATCTTGAATATTGTAAGGAACCGAGTCGTAA
66 GGAACGTTCAGAAAATAGCTCGAAGGAATGGATCATCTTGAATATTGTAAGGAACCAAGTCGTAA
* *
2671 AAGTTTAAAAAGTTCGGAAGTTCATCCAACAGCCAAGAGAAACAATTCTCACGTAAATAAGTTTT
131 AAATATAAAAAGTTCGGAAGTTCATCCAACAGCCAAGAGAAACAATTCTCACGTAAATAAGTTTT
* ** * * * * * * * *
2736 TGCTTTAATGACCAAAACTTGTTTACAAAACAAAAAATTATTTAGACTAAATGATGCGATTACCC
196 TGCTTTAAAGACCAAAA-TTGTTT-CAAAATGACAAACTCTTTAGACCAAATGCTGCTATTTCTC
* * * * *
2801 GAGAATGGAATGTTC--AAAATTGCT-GAAAGGAATGGATGT-TCTTGAATACTTCAAGGAACC-
259 AAGAATCGAACGTTCAGAAAATTGTTCG-AAGGAATGGAT-TATCTTGAATACTTTAAGGAACCG
* * * ** * * * *
2861 AGAGTTATAAAAGAACTCGTAAAGGTTTGAAAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAG
322 A-AGATATGAAAGAACTCGTAAAAGTTTGACTAGTTCGAAAGTTCGTCCGAGAACCAAGAGAGA-
* *
2926 AAACAATTCTCACGTAAATAAGTTTATAAATT-AAA-GACAAAA-CTTGTTTACAAAATGACAAA
385 AAACAATTCTCTCGTAAATAAGTTTAT-AATTCAAACAACAAAACCTT-TTTACAAAATGACAAA
* * * * * * *
2988 CAATTTAGA-AAAATGATGCGATTTTTCAAGCATAGAATGT-TAAGAAAGTTGCTCGAAGGAATG
448 CTATTTAGACCAAATGATGCGAATTTCCGAGCATGGAATGTCGAA-AAA-TTGCTCGAAGGAATG
* * * * *
3051 TATCTTCTTGAATACTGTAAGGAACTGAAGTTATAAAAGAA-TGCGTAAAAGTTTGACAAGTTCG
511 GATCGTCTTGAATGCTTTAAGGAACTGAAATTATAAAAGAACT-CGTAAAAGTTTGACAAGTTCG
** * * *
3115 GAAGTTTGTCCAAGAAC--CAAGCGAAACAATTCTCACGTAAATAAG-ATTTTGATTC
575 GAAGTTCATCCAAGAACTAAAAGAGAAACAATTCTCACGTAAATAAGTA-TTTAATTC
** * * * * * *
3170 AAAGACCAAAACTTGTTTTCAAAATGACAAACTCTTTAGACCAAATGCTGCTATTTCTCAAGAAT
1 AAAGACCAAAACTTGTTCACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCTCGAGTAT
* * * *
3235 CGAACGTTCAGAAAATTGTTCGAAGGAATGAATCATCTTGAATACTT-TAAGGAACC
66 GGAACGTTCAGAAAATAGCTCGAAGGAATGGATCATCTTGAATA-TTGTAAGGAACC
3291 GAAGATATGA
Statistics
Matches: 2243, Mismatches: 313, Indels: 192
0.82 0.11 0.07
Matches are distributed among these distances:
610 68 0.03
612 1 0.00
613 1 0.00
617 2 0.00
618 6 0.00
620 44 0.02
621 4 0.00
622 174 0.08
623 44 0.02
624 105 0.05
625 83 0.04
626 5 0.00
627 2 0.00
628 33 0.01
629 134 0.06
630 11 0.00
631 139 0.06
632 124 0.06
633 39 0.02
634 716 0.32
635 48 0.02
636 50 0.02
637 136 0.06
638 2 0.00
643 5 0.00
644 2 0.00
647 5 0.00
648 30 0.01
649 107 0.05
650 4 0.00
651 118 0.05
653 1 0.00
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.27
Consensus pattern (631 bp):
AAAGACCAAAACTTGTTCACAAAATGACAAACTATTTAGACAAAATGATGCGATTTCTCGAGTAT
GGAACGTTCAGAAAATAGCTCGAAGGAATGGATCATCTTGAATATTGTAAGGAACCAAGTCGTAA
AAATATAAAAAGTTCGGAAGTTCATCCAACAGCCAAGAGAAACAATTCTCACGTAAATAAGTTTT
TGCTTTAAAGACCAAAATTGTTTCAAAATGACAAACTCTTTAGACCAAATGCTGCTATTTCTCAA
GAATCGAACGTTCAGAAAATTGTTCGAAGGAATGGATTATCTTGAATACTTTAAGGAACCGAAGA
TATGAAAGAACTCGTAAAAGTTTGACTAGTTCGAAAGTTCGTCCGAGAACCAAGAGAGAAAACAA
TTCTCTCGTAAATAAGTTTATAATTCAAACAACAAAACCTTTTTACAAAATGACAAACTATTTAG
ACCAAATGATGCGAATTTCCGAGCATGGAATGTCGAAAAATTGCTCGAAGGAATGGATCGTCTTG
AATGCTTTAAGGAACTGAAATTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCC
AAGAACTAAAAGAGAAACAATTCTCACGTAAATAAGTATTTAATTC
Done.