Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001597.1 Kokia drynarioides strain JFW-HI SEQ_113219, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13331
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37


Found at i:3857 original size:29 final size:29

Alignment explanation


    Indices: 3815--3874  Score: 111
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       3805 CGAGTTCGAG

                                     *   
       3815 CACGTGTGTGCAAGGTAAGTGTGTATTAT
          1 CACGTGTGTGCAAGGTAAGTGTGTAATAT

                                         
       3844 CACGTGTGTGCAAGGTAAGTGTGTAATAT
          1 CACGTGTGTGCAAGGTAAGTGTGTAATAT

              
       3873 CA
          1 CA

       3875 AAATGTTAAA


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.27, C:0.12, G:0.30, T:0.32


Consensus pattern (29 bp):   
CACGTGTGTGCAAGGTAAGTGTGTAATAT

Found at i:9139 original size:16 final size:16

Alignment explanation


    Indices: 9118--9148  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       9108 TTGGTTCACT

                            
       9118 GTAATGGAATAGAATC
          1 GTAATGGAATAGAATC

                   *       
       9134 GTAATGGGATAGAAT
          1 GTAATGGAATAGAAT

       9149 TGTGGTCAGT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.42, C:0.03, G:0.29, T:0.26


Consensus pattern (16 bp):   
GTAATGGAATAGAATC
Done.