Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000016.1 Kokia drynarioides strain JFW-HI SEQ_20993, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 643

Length: 1073
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39


Found at i:713 original size:21 final size:21

Alignment explanation


    Indices: 689--742  Score: 90
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        679 TACAAAAATT

                                 
        689 AGGCTTTGTGCCGATGTTATC
          1 AGGCTTTGTGCCGATGTTATC

                         *       
        710 AGGCTTTGTGCCGGTGTTATC
          1 AGGCTTTGTGCCGATGTTATC

             *          
        731 AAGCTTTGTGCC
          1 AGGCTTTGTGCC

        743 TAATAGGTTT


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  21   31  1.00

ACGTcount: A:0.13, C:0.20, G:0.30, T:0.37


Consensus pattern (21 bp):   
AGGCTTTGTGCCGATGTTATC
Done.