Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001607.1 Kokia drynarioides strain JFW-HI SEQ_113234, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2479
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:1007 original size:17 final size:17

Alignment explanation


    Indices: 985--1040  Score: 62
    Period size: 17  Copynumber: 3.3  Consensus size: 17

        975 CCTTTGACTT

                             
        985 TTAACCTTCCATCTTCC
          1 TTAACCTTCCATCTTCC

                           *  
       1002 TTAACCTTCC-T-TGACC
          1 TTAACCTTCCATCT-TCC

                  *           
       1018 TTTAACATTCCATCTTCC
          1 -TTAACCTTCCATCTTCC

                 
       1036 TTAAC
          1 TTAAC

       1041 TTTTTTATAT


Statistics
Matches: 32,  Mismatches: 3, Indels: 8
        0.74            0.07        0.19

Matches are distributed among these distances:
  15    1  0.03
  16    3  0.09
  17   24  0.75
  18    3  0.09
  19    1  0.03

ACGTcount: A:0.21, C:0.36, G:0.02, T:0.41


Consensus pattern (17 bp):   
TTAACCTTCCATCTTCC
Done.