Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001612.1 Kokia drynarioides strain JFW-HI SEQ_113245, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12702
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31

Warning! 62 characters in sequence are not A, C, G, or T


Found at i:82 original size:29 final size:28

Alignment explanation


    Indices: 49--112  Score: 74
    Period size: 29  Copynumber: 2.2  Consensus size: 28

         39 AAATAAATGA

                          *              
         49 AAAATATGTTTCTACTGTATTAAAATTTT
          1 AAAATATGTTTCTAAT-TATTAAAATTTT

                    *   *           *    
         78 AAAATAATTTTTTTAATTATTAAATTTTT
          1 AAAAT-ATGTTTCTAATTATTAAAATTTT

                  
        107 AAAATA
          1 AAAATA

        113 AAAAAATATT


Statistics
Matches: 30,  Mismatches: 4, Indels: 3
        0.81            0.11        0.08

Matches are distributed among these distances:
  28    1  0.03
  29   21  0.70
  30    8  0.27

ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50


Consensus pattern (28 bp):   
AAAATATGTTTCTAATTATTAAAATTTT

Found at i:7758 original size:27 final size:26

Alignment explanation


    Indices: 7696--7772  Score: 73
    Period size: 27  Copynumber: 2.9  Consensus size: 26

       7686 TGTGGGGTTG

                                     *
       7696 GTGCAGCCTGCCAAGTAGGCACCTTT
          1 GTGCAGCCTGCCAAGTAGGCACCTTA

                 *     *  *             
       7722 GATGCCGCCTGGCAGGTAGGCACCTCTA
          1 G-TGCAGCCTGCCAAGTAGGCACCT-TA

                *     *   *        
       7750 GTGCTGCCTGTCAAATAGGCACC
          1 GTGCAGCCTGCCAAGTAGGCACC

       7773 ACCCCACTGT


Statistics
Matches: 41,  Mismatches: 8, Indels: 3
        0.79            0.15        0.06

Matches are distributed among these distances:
  26    1  0.02
  27   38  0.93
  28    2  0.05

ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21


Consensus pattern (26 bp):   
GTGCAGCCTGCCAAGTAGGCACCTTA
Done.