Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001616.1 Kokia drynarioides strain JFW-HI SEQ_113249, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3483
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37


Found at i:948 original size:17 final size:18

Alignment explanation


    Indices: 914--949  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        904 TAAATTTCTA

                              
        914 TCCAATTTATACCTTAAT
          1 TCCAATTTATACCTTAAT

                       *      
        932 TCCAATTTA-ATCTTAAT
          1 TCCAATTTATACCTTAAT

             
        949 T
          1 T

        950 AACTCATTTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  17    8  0.47
  18    9  0.53

ACGTcount: A:0.33, C:0.19, G:0.00, T:0.47


Consensus pattern (18 bp):   
TCCAATTTATACCTTAAT

Found at i:1395 original size:9 final size:9

Alignment explanation


    Indices: 1381--1424  Score: 52
    Period size: 9  Copynumber: 4.7  Consensus size: 9

       1371 TCTGTTCTTC

                    *
       1381 TTTCTTTTG
          1 TTTCTTTTT

                     
       1390 TTTCTTTTT
          1 TTTCTTTTT

                      
       1399 TTTCTTTCTT
          1 TTTCTTT-TT

                     *
       1409 TATTCTTTTA
          1 T-TTCTTTTT

                  
       1419 TTTCTT
          1 TTTCTT

       1425 ATATATATAT


Statistics
Matches: 31,  Mismatches: 2, Indels: 4
        0.84            0.05        0.11

Matches are distributed among these distances:
   9   20  0.65
  10    5  0.16
  11    6  0.19

ACGTcount: A:0.05, C:0.14, G:0.02, T:0.80


Consensus pattern (9 bp):   
TTTCTTTTT
Done.