Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001618.1 Kokia drynarioides strain JFW-HI SEQ_113252, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4132
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35


Found at i:3063 original size:13 final size:14

Alignment explanation


    Indices: 3045--3073  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

       3035 CTTTCAATTC

                          
       3045 TTTCCCCTTTT-AT
          1 TTTCCCCTTTTGAT

                          
       3058 TTTCCCCTTTTGAT
          1 TTTCCCCTTTTGAT

              
       3072 TT
          1 TT

       3074 GGCGTGAATT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13   11  0.73
  14    4  0.27

ACGTcount: A:0.07, C:0.28, G:0.03, T:0.62


Consensus pattern (14 bp):   
TTTCCCCTTTTGAT
Done.