Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000162.1 Kokia drynarioides strain JFW-HI SEQ_110830, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2229
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36


Found at i:1196 original size:15 final size:16

Alignment explanation


    Indices: 1171--1200  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       1161 CAATAAAGTA

                            
       1171 AAATGTAATTTCTTTC
          1 AAATGTAATTTCTTTC

                           
       1187 AAAT-TAATTTCTTT
          1 AAATGTAATTTCTTT

       1201 TAATTTATTA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15   10  0.71
  16    4  0.29

ACGTcount: A:0.33, C:0.10, G:0.03, T:0.53


Consensus pattern (16 bp):   
AAATGTAATTTCTTTC
Done.