Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001620.1 Kokia drynarioides strain JFW-HI SEQ_113254, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 25744
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1415 original size:20 final size:20

Alignment explanation


    Indices: 1377--1421  Score: 54
    Period size: 20  Copynumber: 2.2  Consensus size: 20

       1367 ATTCATTTTC

                     **         
       1377 CTTTTATTTTTCCTCCAAAA
          1 CTTTTATTTCCCCTCCAAAA

                          *     
       1397 CTTTTATTTCCCCTTCAAAA
          1 CTTTTATTTCCCCTCCAAAA

            *    
       1417 ATTTT
          1 CTTTT

       1422 TTTTACCTCC


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51


Consensus pattern (20 bp):   
CTTTTATTTCCCCTCCAAAA

Found at i:4683 original size:6 final size:6

Alignment explanation


    Indices: 4667--4708  Score: 75
    Period size: 6  Copynumber: 7.0  Consensus size: 6

       4657 ATCGATCTCT

                   *                                        
       4667 CTTGCC TTTGCC CTTGCC CTTGCC CTTGCC CTTGCC CTTGCC
          1 CTTGCC CTTGCC CTTGCC CTTGCC CTTGCC CTTGCC CTTGCC

       4709 TATTTTAGTA


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   34  1.00

ACGTcount: A:0.00, C:0.48, G:0.17, T:0.36


Consensus pattern (6 bp):   
CTTGCC

Found at i:25586 original size:5 final size:5

Alignment explanation


    Indices: 25576--25606  Score: 62
    Period size: 5  Copynumber: 6.2  Consensus size: 5

      25566 TTTCCAAAAG

                                                 
      25576 CCCTA CCCTA CCCTA CCCTA CCCTA CCCTA C
          1 CCCTA CCCTA CCCTA CCCTA CCCTA CCCTA C

      25607 TATCATTAAT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   26  1.00

ACGTcount: A:0.19, C:0.61, G:0.00, T:0.19


Consensus pattern (5 bp):   
CCCTA

Done.