Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01001627.1 Kokia drynarioides strain JFW-HI SEQ_113264, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 288041
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Warning! 7 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:803 original size:24 final size:25
Alignment explanation
Indices: 776--823 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
766 TGCAAAAACT
*
776 AAAGA-AACAAATTAA-AGTAAAATA
1 AAAGATAA-AAATTAACAGAAAAATA
800 AAAGATAAAAATTAACAGAAAAAT
1 AAAGATAAAAATTAACAGAAAAAT
824 TTGCAATGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.71, C:0.04, G:0.08, T:0.17
Consensus pattern (25 bp):
AAAGATAAAAATTAACAGAAAAATA
Found at i:10508 original size:104 final size:104
Alignment explanation
Indices: 10328--10543 Score: 432
Period size: 104 Copynumber: 2.1 Consensus size: 104
10318 TAGGAGTGGT
10328 AAACAAACTGGAGAGCCGACTACAGACTCTACTGTAGCACCTCAAGATATTGGTGAAGTGATCCT
1 AAACAAACTGGAGAGCCGACTACAGACTCTACTGTAGCACCTCAAGATATTGGTGAAGTGATCCT
10393 TGGTGAAAAGGTTGAATCTGAAGAGCTTGCCGATGTACC
66 TGGTGAAAAGGTTGAATCTGAAGAGCTTGCCGATGTACC
10432 AAACAAACTGGAGAGCCGACTACAGACTCTACTGTAGCACCTCAAGATATTGGTGAAGTGATCCT
1 AAACAAACTGGAGAGCCGACTACAGACTCTACTGTAGCACCTCAAGATATTGGTGAAGTGATCCT
10497 TGGTGAAAAGGTTGAATCTGAAGAGCTTGCCGATGTACC
66 TGGTGAAAAGGTTGAATCTGAAGAGCTTGCCGATGTACC
10536 AAACAAAC
1 AAACAAAC
10544 AAGTTCCACA
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 112 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (104 bp):
AAACAAACTGGAGAGCCGACTACAGACTCTACTGTAGCACCTCAAGATATTGGTGAAGTGATCCT
TGGTGAAAAGGTTGAATCTGAAGAGCTTGCCGATGTACC
Found at i:17934 original size:52 final size:52
Alignment explanation
Indices: 17856--18149 Score: 507
Period size: 52 Copynumber: 5.7 Consensus size: 52
17846 GTAGATAAAG
*
17856 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATTCTTTATGGATT
1 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
17908 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
1 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
*
17960 AAAAGGTCCTATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
1 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
* *
18012 AAAATGTCCGACGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
1 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
* * * * *
18064 AAAATGTCCGATGACTATTTGTCGTCATGAGTATATGAATCCTTTATGAATT
1 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
18116 AAAAGGTCCGATGACTATGTGTCATCGTGAGTAT
1 AAAAGGTCCGATGACTATGTGTCATCGTGAGTAT
18150 TAAATGGAAT
Statistics
Matches: 228, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 228 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (52 bp):
AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
Found at i:18981 original size:21 final size:21
Alignment explanation
Indices: 18931--18982 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
18921 GGAGTTTTTA
18931 GTATCGGTAGAAGCACGACAT
1 GTATCGGTAGAAGCACGACAT
* * * *
18952 GTTTTGGTAGAAGTCA-TACTT
1 GTATCGGTAGAAG-CACGACAT
18973 GTATCGGTAG
1 GTATCGGTAG
18983 TATTGTCTCA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (21 bp):
GTATCGGTAGAAGCACGACAT
Found at i:20677 original size:15 final size:15
Alignment explanation
Indices: 20653--20696 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
20643 TAATTTTATC
20653 TTTAACTTAGATTAA
1 TTTAACTTAGATTAA
*
20668 TTTAATTTAGATTAA
1 TTTAACTTAGATTAA
*
20683 --TACCTTAGATTAA
1 TTTAACTTAGATTAA
20696 T
1 T
20697 ATCCTTCACA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 11 0.44
15 14 0.56
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.48
Consensus pattern (15 bp):
TTTAACTTAGATTAA
Found at i:20692 original size:13 final size:14
Alignment explanation
Indices: 20674--20702 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
20664 TTAATTTAAT
20674 TTAGATTAATA-CC
1 TTAGATTAATATCC
20687 TTAGATTAATATCC
1 TTAGATTAATATCC
20701 TT
1 TT
20703 CACAAATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (14 bp):
TTAGATTAATATCC
Found at i:26764 original size:29 final size:29
Alignment explanation
Indices: 26722--26780 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
26712 GAATTTTTTG
* *
26722 TAAAATTTGGTTGTGCTTTT-TGTAAATAT
1 TAAAAATTAGTTGT-CTTTTCTGTAAATAT
*
26751 TAAAAATTAGTTGTTTTTTCTGTAAATAT
1 TAAAAATTAGTTGTCTTTTCTGTAAATAT
26780 T
1 T
26781 TTTAAAACAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 4 0.15
29 22 0.85
ACGTcount: A:0.31, C:0.03, G:0.14, T:0.53
Consensus pattern (29 bp):
TAAAAATTAGTTGTCTTTTCTGTAAATAT
Found at i:27542 original size:26 final size:25
Alignment explanation
Indices: 27529--27584 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
27519 TTTTTATAAT
*
27529 TTTTCATTTATTTAATTTATTAAAA
1 TTTTAATTTATTTAATTTATTAAAA
* *
27554 TTTTAATTTATTTTAAATTATTAATA
1 TTTTAATTTA-TTTAATTTATTAAAA
27580 TTTTA
1 TTTTA
27585 TACTAATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (25 bp):
TTTTAATTTATTTAATTTATTAAAA
Found at i:35829 original size:27 final size:27
Alignment explanation
Indices: 35789--35883 Score: 127
Period size: 27 Copynumber: 3.5 Consensus size: 27
35779 AGAAATACTA
* *
35789 TGTATTTGGCTCGAAAAAGCATTATTT
1 TGTATCTGGCTCGAAAGAGCATTATTT
*
35816 TGTATCTGGTTCGAAAGAGCATTATTT
1 TGTATCTGGCTCGAAAGAGCATTATTT
* * *
35843 TGTATCTGGTTCGAATGAGCATTATTC
1 TGTATCTGGCTCGAAAGAGCATTATTT
*
35870 TGTATTTGGCTCGA
1 TGTATCTGGCTCGA
35884 TTAATTTATT
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.41
Consensus pattern (27 bp):
TGTATCTGGCTCGAAAGAGCATTATTT
Found at i:40557 original size:216 final size:216
Alignment explanation
Indices: 40065--43404 Score: 3618
Period size: 216 Copynumber: 15.5 Consensus size: 216
40055 TCGTATCATG
* * * *
40065 AAGTTATAAAAGAATTCATAAAAGTTTGACAAGTTCTGAAATTCGTCCAAGAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
* * * * * * *
40130 CAATTCTTACATGAATCAGTTTTTTATTCACAA-ACCAAAAGTTGTTTACAAAATTAAAAACTAT
66 CAATTCTCACGTAAATAAGTTTTTAATTCA-AAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * *
40194 TTAGACCTAATGATGCGAATTCCCGAGCATGGAATG-TC-GAAAATTTGCTCGAAAGAATGGATC
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAA-TTGCTCGAAGGAATGGATC
* *
40257 GTCTTGAATACTTTAAGGAACTA
194 ATCTTGAATACTTTAAGGAACCA
* *
40280 AAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CAGAGAACTAAGAGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAA
* * * * *
40344 ACAATTCTCACGTTAATGAGTTTTAAATTCAAAGACCAAAATTTGTTTACAAAATGATAAACTAT
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * * * *
40409 TTAAACCAAATGATGCGATTTCCTGAGCGTGCAATGTTTGGAAAATTGGTCGAAGGAATGGATCA
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCA
* *
40474 TATAGAATACTTTAAGGAACCA
195 TCTTGAATACTTTAAGGAACCA
* * * * * *
40496 AAGCTATAAAAGAACTCATAAAAGTTTGACAAGTTAGGATGTTTGGCCAAGAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
** * * *
40561 CAATTCTCGTGAAAATATGTTTTTAATTCAAACACCAAAAGTTGTTTACAAAATGACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
* * * * *
40626 TAAACCAAATGATACG----CCCGAGCATGGAATGTTCAGAAAATAGCTCGAAGGAATTGATCAT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCAT
* *
40687 CTTGAATACTTTAGGGAACCG
196 CTTGAATACTTTAAGGAACCA
* * *
40708 AAGTTACAAAAGAACTCATAAAAGTTTAACAAGTTCGGAAGTTC-TACCAAGAACCAAGAGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAGAACCAAGAGAGAA
** * * * * * *
40772 ACAATTCAAATG-AAA-ATGTTTTTGATTCTAAGA-CAACAAGTTGATTACAAAATGACCAACTA
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA-AAGTTGTTTACAAAATGACAAACTA
* ** * * * * * *
40834 TTTAGACTAAATGATATGATTTTCTGAGCATGTATTGTTCGAAAAATTGCTCGAAGGGATGGATC
129 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATC
* * * *
40899 GTCTAGAATACATTAAGGAACCG
194 ATCTTGAATACTTTAAGGAACCA
* * ** *
40922 AAGTTATAAAAGAACTCTTAAATGTTTGACAAGTTTAGAAGTTCGGCCAAGAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
* * *
40987 CAATTCTTACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACCTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
*** * * * *
41052 TAGACCAAATGATGCGATTTATTGAGCATGGAATGTTCAGAAAATTACACGAATGAATGGATCAT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCAT
* *
41117 CTTGAATACTATAAGGAACTA
196 CTTGAATACTTTAAGGAACCA
* * * * * *
41138 AAGTTATAAATGAACTTGTAAAA-TTTGGACATGTTCGAAAATTCATCCAAGAACCAAGAGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTT-GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA
* ** * * *
41202 ACAATTCCCATTTAAATAAGATTTTAATTCAAAGACAAAAAGTT-TATTACAAATTGACAAACTA
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT-TTACAAAATGACAAACTA
* * * * * * *
41266 TTTAGATCAAACGATGCGATTTCTCAAGCATGGAATGTTTGTAAAATTGGTCGAAGGAATGGATC
129 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATC
* * *
41331 GTCTTGAATACTCTCAGGAACCA
194 ATCTTGAATACTTTAAGGAACCA
* * * * * * * *
41354 AATTTATAAAAGAACTTGCAAATGTTTGACAAGTTTGGAAGTTCATCTAAGAACCAAGAGACAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
* * * *
41419 AAATTCTCATGTAAATTAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
* * ** * * *
41484 TATACCAAATGATGCGAGTTCCTAATCATGGAATGTTC-GAAAAGTTTCTCGAAGGAATTGATCA
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAA-TTGCTCGAAGGAATGGATCA
* *
41548 TCTTGAATACTCTAAGGAACCG
195 TCTTGAATACTTTAAGGAACCA
* * * * * * * *
41570 AAGATAGAAAAGAACTCGCAAATGTTTGAAAAATTCAGAAGTTCGTCCAAGAACCAAGATAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
* * * * * * *
41635 CAATTCTCACGTAAATAAGATTTTAATTTAAATACTAAAAATTGTTTACAAAATGATAAACTGTT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
* * * *
41700 TAGACCAAATGATGCAATTTCCCGAGCATGAAATGTTCAGAAAATTTCTCGAAGGAATGGATCAT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCAT
* **
41765 CTTGAGTACTTTAAGGAACTG
196 CTTGAATACTTTAAGGAACCA
* * * * * **
41786 AATTTATAAAAGAACTCATAAAAGTTTGATAAGTTCAGAAGTTCGACCTAA-AAGAAAGAGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AAGAACCAAGAGAGAA
* * *
41850 ACAATTTTCATGTAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTTACAAAATGACAAACTAT
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * ** * * * * * *
41915 TTAGACCAAATGATGCCATTTACTAAGCTTGGAATGTTCGAAAAATTACTCAAATGAATGGATCG
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCA
* *
41980 TCTTGAATACTATAAGGAACCG
195 TCTTGAATACTTTAAGGAACCA
* * * *
42002 AAGTTATAAAAGAACTCGTAAAAGTTTGACATGTTCGAAAATTCATCCAAGAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
** * *
42067 CAATTCTCATTTAAATAA-TATTTTAATTCAAAGACAAAAAGTT-TATTAGAAAATGACAAACTA
66 CAATTCTCACGTAAATAAGT-TTTTAATTCAAAGACCAAAAGTTGT-TTACAAAATGACAAACTA
** * * *
42130 TTTAGATTAAACGATGCGATTTCCCGAGCATGGAATGTTCGTAAAATT-CGTCAAAGGAATGGAT
129 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGC-TCGAAGGAATGGAT
* *
42194 CGTCTTGAATACTCTCAA-GAACCA
193 CATCTTGAATACT-TTAAGGAACCA
* * * * * * *
42218 AATTTATAAAAGAACTCTTAAATGTTTGACAGGTTCGAAAGTTCATCCAAGAACCAAGAGACAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
* * * *
42283 AAATTCTCAAGTAAATTAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
* * * * *
42348 TACACTAAATGATGTGATTTCCCGAGCATGGGATGTTCGAAAAATTGCTCGAAGGAATGGAT-AG
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCA-
* * **
42412 TCTTGAGTACTTTAAGCAACTG
195 TCTTGAATACTTTAAGGAACCA
* *
42434 AAGTTATAAAAGAACTTGTAAAAGTTTGACAACTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
* * * * * *
42499 -ACATTCTCACGTAAATAAATTTTTAATTTAAATACTAAAAGTTGTTTACAAAATAACAAACTTT
66 CA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * ** * *
42563 TTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCAGAAAATTTATAGAAGGAATGGATTA
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCA
*
42628 TCTTGAGTACTTTAAGGAACCA
195 TCTTGAATACTTTAAGGAACCA
* * * * **
42650 AAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCAGAAGTTCGACCTAGAAGAAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
* * * * **
42715 CAATTTTCATGTAAATAGGTTTTTAATTCAAAG-GCAAATTTTTTGTTTTACAAAATGACAAACT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA--AGTTG-TTTACAAAATGACAAACT
* * * * * * ** *
42779 ATTTAGACCAAATGATGTGAGTTCCCGATCATGAAATGTTTGAAAAATTTATCGAAGGAATTGAT
128 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGAT
42844 CATCTTGAATACTTTAAGGAACCA
193 CATCTTGAATACTTTAAGGAACCA
* * * * * *
42868 AAGTTAGAAAAGAACTTGCAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGATAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
* * *
42933 CAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAATTGTTTACAAAATGAAAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
* ** ** * *
42998 TAGACCAAATGATGTGATTTCCCTTGCATGGAATGCCCGAAAAATTGGTCGAAGGAATGGATCAT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCAT
* * *
43063 CTTGAATACTCTAAGGAATCG
196 CTTGAATACTTTAAGGAACCA
* * * * * * * * * *
43084 TATTTATAAAAGAACTCTTAAATGTTTGAGAAGTCCGAAAGTTTGTTCAAGAACTAAGAGAGAGA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA-A
* * * * *
43149 A-AATTCTCACATAAATATGTTTTTAATTCAAGGAGCAAAAGTTTTTTACAAAATGACAAACTAT
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
** * * * * * *
43213 AAAAACCAAATGAGGCGATTTCACGAGCATGGAATGTTC-AAAAAGTTGCTCGAAGAAATGGATT
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAA-TTGCTCGAAGGAATGGATC
**
43277 GCCTTGAATACTTTAAGGAACCA
194 ATCTTGAATACTTTAAGGAACCA
* * * * *
43300 AAATTATAAAAGAACTTGTAAAAGTTTGACAAGTTCTGAAATTCATCCAAGAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
* *
43365 CAATTCTCACGTGAATTAGATTTTT-ATTCAAAGACCAAAA
66 CAATTCTCACGTAAATAAG-TTTTTAATTCAAAGACCAAAA
43405 TTGGTCTAAC
Statistics
Matches: 2617, Mismatches: 465, Indels: 85
0.83 0.15 0.03
Matches are distributed among these distances:
209 3 0.00
210 53 0.02
211 3 0.00
212 119 0.05
214 121 0.05
215 168 0.06
216 1926 0.74
217 41 0.02
218 179 0.07
219 4 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCAT
CTTGAATACTTTAAGGAACCA
Found at i:43710 original size:363 final size:363
Alignment explanation
Indices: 43038--43767 Score: 865
Period size: 363 Copynumber: 2.0 Consensus size: 363
43028 GAATGCCCGA
* * * *
43038 AAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTAAGGAATCGTATTTATAAAAGAACTCTT
1 AAAATTGGTCGAACGAATGGATCATCTTGAATACTCTAAGGAATCGAAGTTATAAAAGAACTCGT
* * * * * * * *
43103 AAATGTTTGAGAAGTCCGAAAGTTTGTTCAAGAACTAAGAGAGAGAAAATTCTCACATAAATATG
66 AAATGTTTCACAAGTCCGAAAGTTCGTCCAACAACCAAGAGAGAGAAAATTCTCACAGAAATAAG
* * * * *
43168 TTTTTAATTCAAGGAGCAAAAGTTTTTTACAAAATGACAAACTATAAAAACCAAATGAGGCGATT
131 TTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACTATAAAAACCAAATGAGGCAATT
* * ** * *
43233 TCACGAGCATGGAATGTTCAAAAAGTTGCTCGAAGAAATGGATTGCCTTGAATACTTTAAGGAAC
196 TCACGAGCACGGAATATTCAAAAAGTTGCTCGAAGAAATGGATCACCTTGAATACTCTAAAGAAC
*
43298 CAAAATTATAAAAGAACTTGTAAAAGTTTGACAAGTTCTGAAATTCATCCAAGAACCAAGAGAGA
261 CAAAATTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAAATTCATCCAAGAACCAAGAGAGA
* *
43363 AACAATTCTCACGTGAATTAGATTTTT-ATTCAAAGACC
326 AACAATTCTCACGTAAATAAG-TTTTTAATTCAAAGACC
* * * *
43401 AAAATTGGTCTAACGAATGGATCGTCTTGAATACTCTCAA-GAATCGAAGTTATAGAATAACTCG
1 AAAATTGGTCGAACGAATGGATCATCTTGAATACTCT-AAGGAATCGAAGTTATAAAAGAACTCG
* * * * **
43465 TAATTGTTTCTCAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGA-AACTATTCTCATGGAAATA
65 TAAATGTTTCACAAGTCCGAAAGTTCGTCCAACAACCAAGAGAGAGAA-AATTCTCACAGAAATA
* * ** * * *
43529 AGTTTTTAATTTAAAGACCAAAAGTTGTTCACAAAATTACAAACTATTTAGATCAAATGATGCAA
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACTATAAAAACCAAATGAGGCAA
* * * * * * *
43594 TTTCCCGAGCACGGAATATTCGGAAAA-TTGGTTGAAGGAATGGATCATCTTGGATACTCTAAAG
194 TTTCACGAGCACGGAATATTC-AAAAAGTTGCTCGAAGAAATGGATCACCTTGAATACTCTAAAG
* * * * **
43658 AATCGAAGTTATAAAAGAACTTGTAAATGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAG
258 AACCAAAATTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAAATTCATCCAAGAACCAAGAG
* * *
43723 AGAAACAATTCTTATGTAAATAAGTTTTTAATTTAAAGACC
323 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
43764 AAAA
1 AAAA
43768 GTTATTTACA
Statistics
Matches: 304, Mismatches: 59, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
362 7 0.02
363 291 0.96
364 6 0.02
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (363 bp):
AAAATTGGTCGAACGAATGGATCATCTTGAATACTCTAAGGAATCGAAGTTATAAAAGAACTCGT
AAATGTTTCACAAGTCCGAAAGTTCGTCCAACAACCAAGAGAGAGAAAATTCTCACAGAAATAAG
TTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACTATAAAAACCAAATGAGGCAATT
TCACGAGCACGGAATATTCAAAAAGTTGCTCGAAGAAATGGATCACCTTGAATACTCTAAAGAAC
CAAAATTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAAATTCATCCAAGAACCAAGAGAGA
AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
Found at i:43781 original size:216 final size:215
Alignment explanation
Indices: 43401--46112 Score: 2418
Period size: 216 Copynumber: 12.6 Consensus size: 215
43391 TTCAAAGACC
* * * * * * *
43401 AAAATTGGTCTAACGAATGGATCGTCTTGAATACTCTCAA-GAATCGAAGTTATAGAATAACTCG
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTCT-AAGGAACCGAAGTTATAAAAGAACTC-
* ** * * * * *
43465 TAATTGTTTCTCAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACTATTCTCATGGAAATAA
64 TAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * *
43530 GTTTTTAATTTAAAGACCAAAAGTTGTTCACAAAATTACAAACTATTTAGATCAAATGATGCAAT
129 GTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * *
43595 TTCCCGAGCACGGAATATTCGG
194 TTCCCGAGCATGGAATGTTCGA
* * * * * *
43617 AAAATTGGTTGAAGGAATGGATCATCTTGGATACTCTAAAGAATCGAAGTTATAAAAGAACTTGT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAAC-TCT
* * * *
43682 AAATGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAG
65 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* *
43747 TTTTTAATTTAAAGACCAAAAGTTATTTACAAAATGAAAAACTATTTAGACCAAATGAT-CGATT
130 TTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
*
43811 TCTCGAGCATGGAATGTTCGA
195 TCCCGAGCATGGAATGTTCGA
* * ** *
43832 AAAATTGCTTGAATGAATGGATTGTCTTGAATACAT-TAAGGAACCGAAGTTATAAATGAACTCA
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATAC-TCTAAGGAACCGAAGTTATAAAAGAACTC-
* * * * *
43896 TAAAAGTATAACAAGTTCGAAAATTC-TACCAAGAACCAAGAGAGAAACAATTCTCACG-AAA-A
64 TAAATGTTTGACAAGTTCGGAAGTTCGT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * * * * * *
43958 TGTTTTTAATTCAAAGACAAAAAGTT-TATGACAAAAGGAAAAACTATTTAAACCAATTTATGAG
128 AGTTTTTAATTTAAAGACCAAAAGTTGT-TTACAAAATGACAAACTATTTAGACCAAATGATGCG
* *
44022 ATTTCCCGAGCAAGGGATGTTCGA
192 ATTTCCCGAGCATGGAATGTTCGA
* * * * * *
44046 AAAATTGGTCGAAGGGATGGATCATCTTGAAAACTCTTAGAAACCAAAGTTATAAAAGAACTCTT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAACTC-T
* * ** * * * *
44111 AAATGTTTGACATGTCCGGAAGTTCGTTTAAGAATCGAGAGA-AAAAAATTTCTCACATAAATAA
65 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAA-TTCTCACGTAAATAA
* * * *
44175 GTTTTTAATTCAAAGACCAAAAGTTTTTTTACAAAATGACAAACTA-TTAAATCCAAATGATTCG
129 GTTTTTAATTTAAAGACCAAAAG-TTGTTTACAAAATGACAAACTATTTAGA-CCAAATGATGCG
* *
44239 ATTTCCAGAGCATGGGATGTTCGA
192 ATTTCCCGAGCATGGAATGTTCGA
** * *
44263 AAAATTGCTCAAAGGAATGGAATGGATCGCCTTGAATACTTTAA-GAACTGAAGTTATAAAAGAA
1 AAAATTGCTC----GAA-GGAATGGATCATCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAA
* * * * * * *
44327 CTCATAAAAGTTTCACAAGTTCTGAAATTCGTCCAAGAACCAAGTGAGAAACAATTCTCATGTGA
61 CTC-TAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
* * * * *
44392 ATCAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACATACTAATTAGACCAAATGATA
125 ATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* *
44457 CGATTTCTCGAGCATGGAATGTT-TA
190 CGATTTCCCGAGCATGGAATGTTCGA
* * *
44482 GAAAATTGATCAAAGGAATGGATCATCTTGAATACTCTCAA-GAATCGAAGTTATAAAAGAACTA
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTCT-AAGGAACCGAAGTTATAAAAGAACT-
* * * * * *
44546 TTAAATGTTTAACAAGTTCAGATGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACTTAAATA
63 CTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
44611 AGTTTTTAATTTAAACACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGGCTAAATGATGTGA
128 AGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * *
44676 TTTCCCAAGTATGGAATGTTTGA
193 TTTCCCGAGCATGGAATGTTCGA
* ** * * **
44699 AAAATTGCTCGAAAGAATGGATTGTCTTGAATACTTTAAAGAACCGAAGTTGCAAAAGAA--C-A
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAACTCTA
* * * * * *
44761 AA--TTCGA-AACTT------TT-G-CTAAGAACCAAGAGAAAAACAATTCTCATG-AAA-ATGT
66 AATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * * *
44813 TTTTAATTCATAGACAAAAAGTT-TAGTACAAAATGACAAACTATTTAAACCAAATGATGTGATT
131 TTTTAATTTAAAGACCAAAAGTTGT-TTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * *
44877 TCTCGAGTATGGAATGTT-TA
195 TCCCGAGCATGGAATGTTCGA
* * * * * * *
44897 GAAAATTGGTCGAAGGAATAGATCGTCTTGAATACTTTCAGGAACCAAAGTTATAAAAGACCTCT
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAACTC-
** * * * ** *
44962 TAAATGTTTGACAAGTTTAGAAGTTTGTCTAAGAACCTAGAGAGAAACAATTCTCACAAAAATAT
64 TAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * *
45027 GTTTTTAATTTAAAGACCAAAAGTT-TTATACAAAATGAAAAACTATTTAGACCACATGATGTGA
129 GTTTTTAATTTAAAGACCAAAAGTTGTT-TACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * ** *
45091 TTTCCTGAGCTTGGAATACTCGG
193 TTTCCCGAGCATGGAATGTTCGA
* * * * ** *
45114 TAAATCGCTCGAAGGAGTGGATCATCTTAAATACAT-TAAGGAA-AAAAGTTATAAAAGAACACA
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATAC-TCTAAGGAACCGAAGTTATAAAAGAACTC-
* * * *
45177 TAAAAGTATAACAAGTTCGGAACTTC-TACCAAGAACCAAGAGAGAAACAATTCTCACG-AAA-A
64 TAAATGTTTGACAAGTTCGGAAGTTCGT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
45239 TGTTTTTAATTTGAAGA-CAAAAATTTTATTACAAAATGACAAACCATTTAGACCAAATGATGCG
128 AGTTTTTAATTTAAAGACCAAAAGTTGT-TTACAAAATGACAAACTATTTAGACCAAATGATGCG
*
45303 ATTTCCCGAGCATGGAATGTTCGT
192 ATTTCCCGAGCATGGAATGTTCGA
* ** * ** * * * *
45327 AAAATTGGTCGAAGGAATGGATTGTCTTGAGTACTCTCTGGAATCGTAGTTAAAAAAGAACCCTT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAACTC-T
* * * *
45392 AAATGTTCGACAAGTTCGAAAGTTCGAAAGTTCGTCCAAGAAACAAGAGACAAAAAATTCTCACG
65 AAATGTTTGACAAGTTC----G---G-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
*
45457 TAAATTAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
122 TAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* ** * *
45522 GTGTAATTTCCCAAGCATGGAATGTTCAA
187 ATGCGATTTCCCGAGCATGGAATGTTCGA
* * * * * * * *
45551 AAAATTACTCGAATGAATGGATATAGTCTGGAGTACTTTAAGGAATCGAAG--ACCAAAAGAACT
1 AAAATTGCTCGAAGGAATGGAT-CA-TCTTGAATACTCTAAGGAACCGAAGTTA-TAAAAGAACT
* * * * * * * **
45614 CGTAAGA-GTTTGACAAGTCCGAAAGTTTGGCCAACAAGCAAGGGAGAAACAATTCTCATTTAAA
63 C-TAA-ATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* * * ** * * *
45678 TAACTTATTAATTGAAAGACCAAAAACTGTTTACAAAATGACATACTATTTAGACCATATGGTGC
126 TAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * *
45743 AATTTCCTGAGCATGGAATGCTCGA
191 GATTTCCCGAGCATGGAATGTTCGA
* * * *
45768 AAAA-TGTCTCGAAGGAATGGATATAGTCTTG-ATACTTTAAGAAACCGAAGTTATAAAACAACT
1 AAAATTG-CTCGAAGGAATGGAT-CA-TCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAACT
* * * * * * *
45831 CGTAACA-GTTTGACAAGTTTGGAAGTTCGGCCAAGAAGCAAGAGAGAAATAAGTCTTATGTAAA
63 C-TAA-ATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* * *
45895 TAAGTTTTTAATTCAAAGACC-AAACTCTGTTTACAAAATGAAAAACTATTTAGACCAAATGATG
126 TAAGTTTTTAATTTAAAGACCAAAAGT-TGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* *
45959 CGATTTCTCTAGCATGGAATGTTCGA
190 CGATTTCCCGAGCATGGAATGTTCGA
* * * ** * * *
45985 AAAATTTCTTGACA-AAATGGATTGTCTTGAATACTTTAAGGAACCAAAGTTAGAAAAGAACTCC
1 AAAATTGCTCGA-AGGAATGGATCATCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAACT-C
* * *
46049 TAAATGTTTGATAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCGCGTAAATA
64 TAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
46113 GGGAAACGAT
Statistics
Matches: 2039, Mismatches: 378, Indels: 158
0.79 0.15 0.06
Matches are distributed among these distances:
198 2 0.00
199 122 0.06
200 3 0.00
201 27 0.01
202 1 0.00
203 5 0.00
205 4 0.00
206 4 0.00
209 4 0.00
210 3 0.00
212 14 0.01
213 158 0.08
214 173 0.08
215 220 0.11
216 594 0.29
217 344 0.17
218 5 0.00
219 1 0.00
220 58 0.03
221 95 0.05
222 57 0.03
223 4 0.00
224 88 0.04
225 32 0.02
226 21 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (215 bp):
AAAATTGCTCGAAGGAATGGATCATCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAACTCTA
AATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
TTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
CCCGAGCATGGAATGTTCGA
Found at i:44877 original size:199 final size:201
Alignment explanation
Indices: 44577--45361 Score: 670
Period size: 199 Copynumber: 3.8 Consensus size: 201
44567 ATGTTTGTCC
* * * *
44577 AAGAACCAAGAGAGAAACAATTCTCACTTAAATAAGTTTTTAATTTAAACACCAAAAGTTGT-TT
1 AAGAACCAAGAGAGAAACAATTCTCACTGAAATATGTTTTTAATTTAAAGACAAAAAGTT-TATT
* * * *
44641 ACAAAATGAAAAACTATTTAGGCTAAATGATGTGATTTCCCAAGTATGGAATGTTTGAAAAATTG
65 ACAAAATGAAAAACTATTTAGACCAAATGATGTGATTTCCCGAGTATGGAATGTTCGAAAAATTG
* * * *
44706 CTCGAAAGAATGGATTGTCTTGAATACTTTAAAGAACCGAAGTTGCAAAAGAACAAATTCGAAAC
130 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTGCAAAAGAACAAATTCGAAAC
44771 TTTTGCT
195 TTTTGCT
* * * *
44778 AAGAACCAAGAGAAAAACAATTCTCA-TGAAA-ATGTTTTTAATTCATAGACAAAAAGTTTAGTA
1 AAGAACCAAGAGAGAAACAATTCTCACTGAAATATGTTTTTAATTTAAAGACAAAAAGTTTATTA
* * * *
44841 CAAAATGACAAACTATTTAAACCAAATGATGTGATTTCTCGAGTATGGAATGTT-TAGAAAATTG
66 CAAAATGAAAAACTATTTAGACCAAATGATGTGATTTCCCGAGTATGGAATGTTCGA-AAAATTG
* * * ** *
44905 GTCGAAGGAATAGATCGTCTTGAATACTTTCAGGAACCAAAGTTATAAAAGACCTCTTAAATGTT
130 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTGCAAAAGA--AC--AAA--TT
* *
44970 TGACAAGTTTAGAAGTTTGTCT
189 CGA-AA--CT-----TTTG-CT
* ** *
44992 AAGAACCTAGAGAGAAACAATTCTCACAAAAATATGTTTTTAATTTAAAGACCAAAAGTTT-TAT
1 AAGAACCAAGAGAGAAACAATTCTCACTGAAATATGTTTTTAATTTAAAGACAAAAAGTTTAT-T
* * ** ** *
45056 ACAAAATGAAAAACTATTTAGACCACATGATGTGATTTCCTGAGCT-TGGAATACTCGGTAAATC
65 ACAAAATGAAAAACTATTTAGACCAAATGATGTGATTTCCCGAG-TATGGAATGTTCGAAAAATT
* * * * *
45120 GCTCGAAGGAGTGGATCATCTTAAATACATTAAGGAA-AAAAGTTATAAAAGAACACATAAAAGT
129 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAG-T-T----G----C--AAAAG-
* * * * *
45184 ATAACAAGTTCGGAACTTCTACC
181 --AACAAATTCGAAACTTTTGCT
* *
45207 AAGAACCAAGAGAGAAACAATTCTCAC-GAAA-ATGTTTTTAATTTGAAGACAAAAATTTTATTA
1 AAGAACCAAGAGAGAAACAATTCTCACTGAAATATGTTTTTAATTTAAAGACAAAAAGTTTATTA
* * * * * *
45270 CAAAATGACAAACCATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGTAAAATTGG
66 CAAAATGAAAAACTATTTAGACCAAATGATGTGATTTCCCGAGTATGGAATGTTCGAAAAATTGC
* *
45335 TCGAAGGAATGGATTGTCTTGAGTACT
131 TCGAAGGAATGGATCGTCTTGAATACT
45362 CTCTGGAATC
Statistics
Matches: 458, Mismatches: 87, Indels: 66
0.75 0.14 0.11
Matches are distributed among these distances:
198 2 0.00
199 122 0.27
200 4 0.01
201 26 0.06
203 3 0.01
205 4 0.01
206 2 0.00
208 1 0.00
213 104 0.23
214 30 0.07
215 34 0.07
216 109 0.24
217 2 0.00
221 1 0.00
223 2 0.00
224 3 0.01
226 2 0.00
227 5 0.01
228 1 0.00
230 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (201 bp):
AAGAACCAAGAGAGAAACAATTCTCACTGAAATATGTTTTTAATTTAAAGACAAAAAGTTTATTA
CAAAATGAAAAACTATTTAGACCAAATGATGTGATTTCCCGAGTATGGAATGTTCGAAAAATTGC
TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTGCAAAAGAACAAATTCGAAACT
TTTGCT
Found at i:45416 original size:8 final size:8
Alignment explanation
Indices: 45396--45425 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
45386 ACCCTTAAAT
45396 GTTCGACAA
1 GTTCGA-AA
45405 GTTCGAAA
1 GTTCGAAA
45413 GTTCGAAA
1 GTTCGAAA
45421 GTTCG
1 GTTCG
45426 TCCAAGAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 15 0.71
9 6 0.29
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.27
Consensus pattern (8 bp):
GTTCGAAA
Found at i:46815 original size:216 final size:216
Alignment explanation
Indices: 46114--48549 Score: 2441
Period size: 216 Copynumber: 11.3 Consensus size: 216
46104 GCGTAAATAG
* * ** * * *
46114 GGAAACGATGTTATAAAAGAACTCGTAAAACTTTGACCAG-TTCGAAAATTCTTCCAAGAA-CAA
1 GGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAA
* * * *
46177 GAGAGAAACAATTCTGACGTAAATAAATTTTTAA-TT--CGACCAAAAGTT-TAATACAAAATGA
65 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGT-TTACAAAATGA
* ** * * * **
46238 CAAACTATTTAGATCAAATGATGTAATTTCCCGAGAATGAAATGTTCTAAAAATTAG-TCGAAGG
129 CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTAGAAAAATT-GCTCGAAGG
* * *
46302 AATGGATAGCCTTTAATACTTTAA
193 AATGGATCGTCTTGAATACTTTAA
* * * *
46326 GGAATCGAAGTTATAAAAGAACTCGTAAATTTTTGACAAG-TTCGGAAGTTTAG-CCAAGAAGCA
1 GGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTC-GAAG-TTCGTCCAAGAACCA
* ** * * * *
46389 AGGGAGAAACAATTCTCATTTAAATAATTTTTTAATTCAAAGATCGAAAGTTGTTTACAAAATGA
64 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGA
* * * *
46454 CAAACTATTTAGACTAAATGGTGTGATTT-TCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGA
129 CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGGA
* * * *
46518 GTGGATCGTCCTCATTACTTTAA
194 ATGGATCGTCTTGAATACTTTAA
** * * * *
46541 GGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGA-TAGGTTCGAAAGTTCATCCAAGAACCAA
1 GGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAA
* * * * * * *
46605 GAGTGAAACAATTCTCATGTAAATAAATTTTTAATTTAACGACAAAAAGTTGATTACAAAATGAA
65 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGAC
* * * *
46670 AAATTATTTAGACCAAATGATGTGATTTCTCAAGCATGGAATGTTAGAAAAATTGGTCGAAGGAA
130 AAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGGAA
* *
46735 TGGATCGTCTTGAATACTCTCA
195 TGGATCGTCTTGAATACTTTAA
* * * * *
46757 GGAACCGAAGTTATAAAAGAACTCTTAAATGTTTGAGAAGTTTAGAAGTTTGTCCAAGAACAAAG
1 GGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAG
* * * * *
46822 TGAAAAACAATTCTCACGTAAATTAGTTTTTAA-TTAAAAATGCAAAAGTTGTTTA-AAAATTGA
66 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGA-CCAAAAGTTGTTTACAAAA-TGA
* * * * *
46885 CAAACTATTTAGACCAAATGATGCGA-TTCCCTAAGCGTGGAATAATT-GAAAAATTACTCGAAG
129 CAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAAT-GTTAGAAAAATTGCTCGAAG
*
46948 GAATGGATCATCTTGAATACTTTAA
192 GAATGGATCGTCTTGAATACTTTAA
* * * * * *
46973 GGAACCAAAGTTATAAAAAAAACTCGTAAATGTTTAACAAGTTTGGAACTTCGTCCCAGAA-CAA
1 GGAACCGAAGTTAT-AAAAGAACTCGTAAATGTTTGACAAGTTTCGAAGTTCGTCCAAGAACCAA
* * * * * * *
47037 GAGAGAAACAATTCTTACATAATTAAGTTTTTAATTCAAAGACCGAAAGTTATTTATAAAATGAC
65 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGAC
* * * *
47102 AAACTATTTAGAGCAAATGATGCGATTTC-CTGAGAAAGGAATGTTCA-AAAAATTGGTCGAAGG
130 AAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTT-AGAAAAATTGCTCGAAGG
* * * *
47165 AATGCATCATCTTGAATACTCTCA
193 AATGGATCGTCTTGAATACTTTAA
* * * ** *
47189 GGAATCAAATTTATAAAAGAACTATTAAAAT-TTTGACAAGTTTCGAAGTTCGTCAAAGAA-CAA
1 GGAACCGAAGTTATAAAAGAACTCGT-AAATGTTTGACAAGTTTCGAAGTTCGTCCAAGAACCAA
* * *
47252 GGGAGAAAAAAATTCTCACATAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGA
65 GAGAG-AAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGA
* * *
47317 CAAACTATTTAGACCAGATGATGCGATTTTTTGAGCATGGAATGTTCAG-AAAATTGCTCGAAGG
129 CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT-AGAAAAATTGCTCGAAGG
* *
47381 AATTGATCATCTTGAATACTTTAA
193 AATGGATCGTCTTGAATACTTTAA
* * * * *
47405 GAAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGAAAGTTCGTCGAAGAACTAA
1 GGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAA
* * * *
47469 GAGAGAAACAATTCTCACGTTAATGAGTTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
65 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGAC
* * *
47534 AAACTATTTAGACCAAATGATGCGATTTC-CAGAGCATGCAATGTTCGAAAAATTGGTCGAAGGA
130 AAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTAGAAAAATTGCTCGAAGGA
*
47598 ATGGATCGTCATGAATACTTTAA
194 ATGGATCGTCTTGAATACTTTAA
* * ** * * *
47621 GGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTAGGATGTTTGGCCAAGAACCAAG
1 GGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAG
* * * *
47686 AGAGAAACAAATTCTCATGTAAATATGTTTTTAATTCAAACACCAAAAGTTGTTTACAAAATGAC
66 AGAGAAAC-AATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGAC
* * * * * *
47751 AAACTATTTAGACCAAATGAAGCGATTTCCCGAGCATGGAATGTTCA-TAAAATAGCTCAAAGAA
130 AAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT-AGAAAAATTGCTCGAAGGA
* * *
47815 ATGGATTGCCTTGAATACTTTAG
194 ATGGATCGTCTTGAATACTTTAA
* * * * * * *
47838 GGAACCAAAGTTACAAAAGAACTCATAAAAGTTTAACAAGTTTGGAAATTCAGT-CAAGAACCAA
1 GGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTCGAAGTTC-GTCCAAGAACCAA
* * * * *
47902 GAGAGAAACAATTCACACG-AAA-ATGTTTTTGATCT-AAGA-CAACAAGTTGATTACAAAATGA
65 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAA-AAGTTGTTTACAAAATGA
* * *
47963 CCAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGTG-TTGTTCA-AAAAATTGCTCGAAG
129 CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATG-GAATGTT-AGAAAAATTGCTCGAAG
* * * *
48026 GGATGGATCATCTTGAGTACATTAA
192 GAATGGATCGTCTTGAATACTTTAA
* * * *
48051 GGAACAGAAGTTATAAAAGAACTCTTAAATGTTTGACAAGTTTAGAAGTTCGGCCAAGAACCAAG
1 GGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAG
* ** * * * *
48116 AGAGAAACAATTCTCACGT-AA-GAGTTTTTAATTCGAAGACTAAAAGTTTTTTATAGAATGACA
66 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACA
* *
48179 AACTATTTAGACCAAATGATGCGATTTCTCGAGCATGAAATGTTAGAAAAATTACTCGAAGGAAT
131 AACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGGAAT
*
48244 GGATCGTCTTGAATACTATAA
196 GGATCGTCTTGAATACTTTAA
* * * * * * *
48265 GGAA-TGAAAGTTATAAAAGAACTAGTAAAAGTTTGACATG-TTCGAAAATTCATCAAAGAACCA
1 GGAACCG-AAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTCG-AAGTTCGTCCAAGAACCA
* ** * *
48328 AGAGAAAAACAATTCTCATTTAAATAAGATTTTAATTCAAAGA-CAAAGAGTT-TATTACAAAAT
64 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAA-AGTTGT-TTACAAAAT
* * * * *
48391 GACACAAACTATTTAGATCAAACGATGTGATTTC-CTGAGCATGGAATGTTCGTAAAAA-TGGTC
127 G--ACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTAG-AAAAATTGCTC
* *
48454 GAAGGAATGGATCGTCTTTGAATACTCTCA
188 GAAGGAATGGATCGTC-TTGAATACTTTAA
* * * * ** * **
48484 GGAATCAAATTTATAAAAGAACTCTTAAATGTTTG-GTAGGTTCGAAAGTTCGTATAAGAACCAA
1 GGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAA
48548 GA
65 GA
48550 TGGTAAGATC
Statistics
Matches: 1853, Mismatches: 313, Indels: 109
0.81 0.14 0.05
Matches are distributed among these distances:
212 51 0.03
213 211 0.11
214 176 0.09
215 246 0.13
216 787 0.42
217 252 0.14
218 64 0.03
219 66 0.04
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.28
Consensus pattern (216 bp):
GGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAG
AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACA
AACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGGAAT
GGATCGTCTTGAATACTTTAA
Found at i:49325 original size:74 final size:74
Alignment explanation
Indices: 49241--49390 Score: 255
Period size: 74 Copynumber: 2.0 Consensus size: 74
49231 TGGAGGGATA
* *
49241 CAATGTTTCATTTAAGAGTTTTTAAATGAATCAACACATTCATTTATGAATGATGAATGATGGTT
1 CAATGATTCATTCAAGAGTTTTTAAATGAATCAACACATTCATTTATGAATGATGAATGATGGTT
49306 GTTCACATT
66 GTTCACATT
* *
49315 CAATGATTCATTCAAGAGTTTTTAAATGAATCAACATATTCATTTATGAATGATGAATGATTGTT
1 CAATGATTCATTCAAGAGTTTTTAAATGAATCAACACATTCATTTATGAATGATGAATGATGGTT
*
49380 GTTCACTTT
66 GTTCACATT
49389 CA
1 CA
49391 TTTTGTAAAG
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (74 bp):
CAATGATTCATTCAAGAGTTTTTAAATGAATCAACACATTCATTTATGAATGATGAATGATGGTT
GTTCACATT
Found at i:49938 original size:5 final size:5
Alignment explanation
Indices: 49928--49987 Score: 77
Period size: 5 Copynumber: 12.0 Consensus size: 5
49918 GATGTATGCT
* * *
49928 AGAAA AGAAA AGAAA CGAAA TGAAA A-AGAA AGAAA CGAAA AGAAA AGAAA
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGA-AA AGAAA AGAAA AGAAA AGAAA
49978 AGAAA AGAAA
1 AGAAA AGAAA
49988 TGAGATGAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
4 1 0.02
5 46 0.96
6 1 0.02
ACGTcount: A:0.75, C:0.03, G:0.20, T:0.02
Consensus pattern (5 bp):
AGAAA
Found at i:49959 original size:20 final size:21
Alignment explanation
Indices: 49930--49990 Score: 90
Period size: 20 Copynumber: 3.0 Consensus size: 21
49920 TGTATGCTAG
49930 AAAAGAAAAGAAACGAAATGA
1 AAAAGAAAAGAAACGAAATGA
*
49951 AAAAG-AAAGAAACGAAAAG-
1 AAAAGAAAAGAAACGAAATGA
*
49970 AAAAGAAAAGAAAAGAAATGA
1 AAAAGAAAAGAAACGAAATGA
49991 GATGAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 5 0.14
20 25 0.71
21 5 0.14
ACGTcount: A:0.74, C:0.03, G:0.20, T:0.03
Consensus pattern (21 bp):
AAAAGAAAAGAAACGAAATGA
Found at i:55633 original size:74 final size:74
Alignment explanation
Indices: 55550--55699 Score: 255
Period size: 74 Copynumber: 2.0 Consensus size: 74
55540 TGGAGGGATA
55550 CAATGTTTCATTCAAGAATTTTTAAATGAATCAACACATTCATTTATGAATGATAAAAGATGGAT
1 CAATGTTTCATTCAAGAATTTTTAAATGAATCAACACATTCATTTATGAATGATAAAAGATGGAT
55615 GTTCACATT
66 GTTCACATT
* * * *
55624 CAATGTTTCATTCAAGAGTTTTTAAATGAATCAACACATTCATTTATGAATGATGAATGATGGTT
1 CAATGTTTCATTCAAGAATTTTTAAATGAATCAACACATTCATTTATGAATGATAAAAGATGGAT
*
55689 GTTCACTTT
66 GTTCACATT
55698 CA
1 CA
55700 TTTTGTAAAG
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (74 bp):
CAATGTTTCATTCAAGAATTTTTAAATGAATCAACACATTCATTTATGAATGATAAAAGATGGAT
GTTCACATT
Found at i:56561 original size:216 final size:216
Alignment explanation
Indices: 56174--58256 Score: 1984
Period size: 216 Copynumber: 9.7 Consensus size: 216
56164 AATCATATCA
* * * * * * * *
56174 CAAGAGACAAAAAATTCTCATGTGAATTAGTTTTTAATTTAAAGACCAAAAGTTGTTCACAAAAT
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTACAAAAT
* * ** * *
56239 GACAAACTATTTAGACCAAATGGTACGATTTCCATAGCATGGAATGTTCAAAAAATTGCTCAAAA
66 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAG
* * * * ** * *
56304 GAATGGGTAGACTT-AAGTACTTTAAGCAATTGAAGTTATAAAAGAACTTGTGAAAGTTTGACAA
131 GAATGGATCGTCTTGAA-TACTTTAAGGAACCGAAGTTATAAAAGAACTTATAAAAGTTTGACAA
* * *
56368 CTTCGGAAGTTCGTTCAAGAAC
195 GTTCGGAAGTTCATCCAAGAAC
* * *
56390 TAAGAGAGAAA-ACATTCTCATGTAAATAAGTTTTTAATTTAAAGACTAAAAGTTGTTTACAAAA
1 CAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTACAAAA
* * * * * *
56454 TAACAAACTTTTTAGACCAAATGATGCAATTTCCTGAGCATGGAATGCTCTAAAAATTGCTCGAA
65 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAA
* * * * *
56519 GGAATGGATCGTCTTGAGTACTTTAAGGACCCAAAGTTATAAAAGAACTCATAAAAGTTTAACAA
130 GGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTATAAAAGTTTGACAA
* * *
56584 GTTCGAAAGTTCAACCAAGAAG
195 GTTCGGAAGTTCATCCAAGAAC
* * * * * * *
56606 AAAGAGAGAAACAATTCTTATGTAAATAAATTTTAAATTCAAAGACCAAAAAGTTTTTTACAAAA
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CTAAAAGTTGTTTACAAAA
* * * * * * * *
56671 TGAAAAACTATTTAAACCAATTGATGCAATTTCTCAATCAT-GAAGTGTTCGGAAAAATTG-TCG
65 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA-TGTTC-AAAAAATTGCTCG
* * * * * ** *
56734 AAGGAATGGATAGTCTTG-ATGCTCTCAGGAATCGAAGTTATAAAAGAACTCT-TAAATTTTTTA
128 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT-TATAAAAGTTTGA
* * * *
56797 GAAGTTCGAAAGTTCGTTCAAGAAC
192 CAAGTTCGGAAGTTCATCCAAGAAC
* * * * *
56822 CAAGAGAGAGAA-AATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAATGGTTT-----T
1 CAAGAGAGA-AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTACAAAA
* * * * * * * * *
56881 TAACAAAC-AATTAAAACAGAATGAAGTGA-TTCCACGAGAATGGAATGTTCAGAAAATTTCTCG
65 TGACAAACTATTTAGACCA-AATGATGCGATTTCC-CGAGCATGGAATGTTCAAAAAATTGCTCG
* * * * **
56944 AATGAATGGATCGCCTTGAATAATTTAAAGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
128 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTATAAAAGTTTGAC
* *
57009 AAGTTCTGAAATTCATCCAAGAAC
193 AAGTTCGGAAGTTCATCCAAGAAC
* * * * *
57033 CAAAAGAGAAACAATTCTCACATGAATCAGTTTTTTATTCAAAGACTAAAAGTTGTTTACAAAAT
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTACAAAAT
* * * * *** * *
57098 TAGAAACTATTTAGACCTAATGATGAGATTTTTTGAGCATGGAATGTTCAAAAAATTACTCGAAA
66 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAG
* * * * * * *
57163 GAAT-GATCGTCTTAAAAACTTTAAAGAACCAAAGTTACAAAAGAACTTATAAAAGTATAACAAG
131 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTATAAAAGTTTGACAAG
* *
57227 TTCAGAAGTTC-TACCAAGAAT
196 TTCGGAAGTTCAT-CCAAGAAC
* *
57248 CAAGAGAGAAACAATTCTCACG-AAA-ATG-TTTTAATTCAAAGACAAAAAGTT-TATTACAAAA
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGT-TTACAAAA
* * * * ** *
57309 TGACAAACTATTTAAACCAAATGATACGATTTCCCGAGCACGAAATGTTCAGGAAATTGGTCGAA
65 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAA
* * * * *
57374 TGAATGGATCGTCTTCAATACTTTCAGGAACCGAAGTTATAAAAGAACTCT-GAAATGTTTGACA
130 GGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT-TATAAAAGTTTGACA
**
57438 AGTTTAGAAGTTCATCCAAGAAC
194 AGTTCGGAAGTTCATCCAAGAAC
* * *
57461 CTAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTTAAAGA-TCAAAAGTT-TTATACAAA
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACT-AAAAGTTGTT-TACAAA
* *
57524 ATGACAAATTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGA
64 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGA
* * * * * *
57589 AGGAATGGATCGTCTTCAATACTTTAAGGAATCTAAGTTATAAAAGAACTCATAAAAGTATAACA
129 AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTATAAAAGTTTGACA
* * *
57654 AGTTCGAAAGTTC-TGGCAAGAAA
194 AGTTCGGAAGTTCAT-CCAAGAAC
* * *
57677 CAAGAGAGAAACAATTCTCACG-AAA-ACGTTTTTCATTCAAAGACAAAAAGTT-TATTACAAAA
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGT-TTACAAAA
* * ** * *
57739 TGACAAACTATTTGGACC-AACGATGCGATTTCCCGAGCATGGAATGTTCGTAAAATTGGTCAAA
65 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAA
* * ** * *
57803 GGAATGGATCATCTTGAATACTCTT-TGGAACAAAAGTTATAAAAGAACTCT-TAAATGTTTGAG
130 GGAATGGATCGTCTTGAATACT-TTAAGGAACCGAAGTTATAAAAGAACT-TATAAAAGTTTGAC
* *
57866 AAGTCCGGAAGTTCATTCAAGAAC
193 AAGTTCGGAAGTTCATCCAAGAAC
* * * *
57890 CAAGAGAGAGAA-AATCCTCACATAAATAAGTTTTTAATTTAAAGAATAAAAGTCT-TTTACAAA
1 CAAGAGAGA-AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGT-TGTTTACAAA
* * * * ***
57953 ATGACAAACTATTAAAACCAAATGAAGCAATTTCCCGAGCATGGAATGTTCGGTAAATTGCTCGA
64 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGA
* * * * ** *
58018 AGTAATGGATCGCCTTGAATACTTTAAGGAACCGAATTTATAAAATAACTCGTAAAAGATTGACA
129 AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTATAAAAGTTTGACA
** *
58083 AGTTCTAAAATTCATCCAAGAAC
194 AGTTCGGAAGTTCATCCAAGAAC
* * * * *
58106 CAAGAGAGAAACAATTCTCACATGAATTAGATTTTT-ATTCAAAGACCAAAATTTGTTTACAAAA
1 CAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTTAATTCAAAGACTAAAAGTTGTTTACAAAA
* * * * * *
58170 TTAAAAACTATTTAGACTC-AATGATGCGATTTCCCAAGCATTGAATGTTCAAAAAATTGGTCTA
65 TGACAAACTATTTAGAC-CAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGA
*
58234 AGGAATGGATCATCTTGAATACT
129 AGGAATGGATCGTCTTGAATACT
58257 CTCAAAATCG
Statistics
Matches: 1516, Mismatches: 301, Indels: 100
0.79 0.16 0.05
Matches are distributed among these distances:
209 17 0.01
210 41 0.03
211 105 0.07
212 83 0.05
213 209 0.14
214 62 0.04
215 153 0.10
216 747 0.49
217 91 0.06
218 8 0.01
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (216 bp):
CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTACAAAAT
GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAG
GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTATAAAAGTTTGACAAG
TTCGGAAGTTCATCCAAGAAC
Found at i:57846 original size:429 final size:424
Alignment explanation
Indices: 56174--58256 Score: 1975
Period size: 429 Copynumber: 4.8 Consensus size: 424
56164 AATCATATCA
* * * * * *
56174 CAAGAGACAAAAAATTCTCATGTGAATTAGTTTTTAATTTAAAGACCAAAAGTTGTTCACAAAAT
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTT-TTTACAAAAT
* * ** * *
56239 GACAAACTATTTAGACCAAATGGTACGATTTCCATAGCATGGAATGTTCAAAAAATTGCTCAAAA
65 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAG
* * * * * ** * * * *
56304 GAATGGGTAGACTTAAGTACTTTAAGCAATTGAAGTTATAAAAGAACTTGTGAAAGTTTGACAAC
130 GAATGGATCGTCTTAA-TACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTATAACAAG
* * * *
56369 TTCGGAAGTTC-GTTCAAG-AACTAAGAGAGAAA-ACATTCTCATGTAAATAAGTTTTTAATTTA
194 TTCGAAAGTTCTG-CCAAGAAAC-AAGAGAGAAACA-ATTCTCACG-AAA-AAGTTTTTAATTCA
* * * * *
56431 AAGACTAAAAGTTGTTTACAAAATAACAAACTTTTTAGACCAAATGATGCAATTTCCTGAGCATG
254 AAGACAAAAAGTT-TTTACAAAATGACAAACTATTTAGACC-AATGATGCGATTTCCCGAGCATG
* * * * *
56496 GAATGCTCTAAAAATTGCTCGAAGGAATGGATCGTCTTGAGTACTTTAAGGACCCAAAGTTATAA
317 GAATGTTC-GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
* * * *
56561 AAGAACTCAT-AAAAGTTTAACAAGTTCGAAAGTTCAACCAAGAAG
381 AAGAACTC-TGAAAAGTTTGACAAGTTTG-AAGTTCATCCAAGAAC
* * * * * *
56606 AAAGAGAGAAACAATTCTTATGTAAATAAATTTTAAATTCAAAGACCAAAAAGTTTTTTACAAAA
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACC-AAAAG-TTTTTACAAAA
* * * * * * * *
56671 TGAAAAACTATTTAAACCAATTGATGCAATTTCTCAATCAT-GAAGTGTTCGGAAAAATTG-TCG
64 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA-TGTTC-AAAAAATTGCTCG
* * * * * * ** * * *
56734 AAGGAATGGATAGTCTTGATGCTCTCAGGAATCGAAGTTATAAAAGAACTCTTAAATTTTTTAGA
127 AAGGAATGGATCGTCTTAATACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTATAACA
* * *
56799 AGTTCGAAAGTTC-GTTCAAGAACCAAGAGAGAGAA-AATTCTCACATAAATAAGTTTTTAATTC
192 AGTTCGAAAGTTCTG-CCAAGAAACAAGAGAGA-AACAATTCTCAC-GAAA-AAGTTTTTAATTC
* * * * * *
56862 AAAGACCAAAAATGGTTTTT-----A--ACAAACAATTAAAACAGAATGAAGTGA-TTCCACGAG
253 AAAGA-CAAAAA--GTTTTTACAAAATGACAAACTATTTAGAC-CAATGATGCGATTTCC-CGAG
* ** * * * * *
56919 AATGGAATGTTCAGAAAATTTCTCGAATGAATGGATCGCCTTGAATAATTTAAAGAACCGAAGTT
313 CATGGAATGTTC-GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTT
*
56984 ATAAAAGAACTC-GTAAAAGTTTGACAAGTTCTGAAATTCATCCAAGAAC
377 ATAAAAGAACTCTG-AAAAGTTTGACAAGTT-TGAAGTTCATCCAAGAAC
* * * * * * *
57033 CAAAAGAGAAACAATTCTCACATGAATCAGTTTTTTATTCAAAGACTAAAAGTTGTTTACAAAAT
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTT-TTTACAAAAT
* * * * *** * *
57098 TAGAAACTATTTAGACCTAATGATGAGATTTTTTGAGCATGGAATGTTCAAAAAATTACTCGAAA
65 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAG
* * * * * *
57163 GAAT-GATCGTCTTAAAAACTTTAAAGAACCAAAGTTACAAAAGAACTTATAAAAGTATAACAAG
130 GAATGGATCGTCTT-AATACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTATAACAAG
* * *
57227 TTC-AGAAGTTCTACCAAGAATCAAGAGAGAAACAATTCTCACGAAAATG-TTTTAATTCAAAGA
194 TTCGA-AAGTTCTGCCAAGAAACAAGAGAGAAACAATTCTCACGAAAAAGTTTTTAATTCAAAGA
* * * *
57290 CAAAAAGTTTATTACAAAATGACAAACTATTTAAACCAAATGATACGATTTCCCGAGCACGAAAT
258 CAAAAAGTTT-TTACAAAATGACAAACTATTTAGACC-AATGATGCGATTTCCCGAGCATGGAAT
* * * * *
57355 GTTCAGGAAATTGGTCGAATGAATGGATCGTCTTCAATACTTTCAGGAACCGAAGTTATAAAAGA
321 GTTC-GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
*
57420 ACTCTGAAATGTTTGACAAGTTTAGAAGTTCATCCAAGAAC
385 ACTCTGAAAAGTTTGACAAGTTT-GAAGTTCATCCAAGAAC
* * *
57461 CTAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTTAAAGATCAAAAGTTTTATACAAAAT
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTTT-TACAAAAT
* *
57526 GACAAATTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAG
65 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAG
*
57591 GAATGGATCGTCTTCAATACTTTAAGGAATCTAAGTTATAAAAGAACTCATAAAAGTATAACAAG
130 GAATGGATCGTCTT-AATACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTATAACAAG
* * *
57656 TTCGAAAGTTCTGGCAAGAAACAAGAGAGAAACAATTCTCACGAAAACGTTTTTCATTCAAAGAC
194 TTCGAAAGTTCTGCCAAGAAACAAGAGAGAAACAATTCTCACGAAAAAGTTTTTAATTCAAAGAC
* *
57721 AAAAAGTTTATTACAAAATGACAAACTATTTGGACCAACGATGCGATTTCCCGAGCATGGAATGT
259 AAAAAGTTT-TTACAAAATGACAAACTATTTAGACCAATGATGCGATTTCCCGAGCATGGAATGT
* * * *
57786 TCGTAAAATTGGTCAAAGGAATGGATCATCTTGAATACTCTT-TGGAACAAAAGTTATAAAAGAA
323 TCG-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAA
* * * ** *
57850 CTCTTAAATGTTTGAGAAGTCCGGAAGTTCATTCAAGAAC
386 CTCTGAAAAGTTTGACAAGT-TTGAAGTTCATCCAAGAAC
* * **
57890 CAAGAGAGAGAA-AATCCTCACATAAATAAGTTTTTAATTTAAAGAATAAAAGTCTTTTACAAAA
1 CAAGAGAGA-AACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGT-TTTTACAAAA
* * * * ***
57954 TGACAAACTATTAAAACCAAATGAAGCAATTTCCCGAGCATGGAATGTTCGGTAAATTGCTCGAA
64 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAA
* * * * * * *
58019 GTAATGGATCGCCTTGAATACTTTAAGGAACCGAATTTATAAAATAACTCGTAAAAG-ATTGACA
129 GGAATGGATCGTCTT-AATACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTA-TAACA
* * * **
58083 AGTTCTAAAATTCAT-CCAAGAACCAAGAGAGAAACAATTCTCACATGAATTAGATTTTT-ATTC
192 AGTTCGAAAGTTC-TGCCAAGAAACAAGAGAGAAACAATTCTCAC--GAAAAAG-TTTTTAATTC
* * * * *
58146 AAAGACCAAAATTTGTTTACAAAATTAAAAACTATTTAGACTCAATGATGCGATTTCCCAAGCAT
253 AAAGACAAAAAGTT-TTTACAAAATGACAAACTATTTAGAC-CAATGATGCGATTTCCCGAGCAT
* * * *
58211 TGAATGTTCAAAAAATTGGTCTAAGGAATGGATCATCTTGAATACT
316 GGAATGTTC-GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACT
58257 CTCAAAATCG
Statistics
Matches: 1372, Mismatches: 228, Indels: 102
0.81 0.13 0.06
Matches are distributed among these distances:
420 4 0.00
421 2 0.00
422 6 0.00
423 14 0.01
424 2 0.00
425 23 0.02
426 130 0.09
427 156 0.11
428 235 0.17
429 411 0.30
430 57 0.04
431 42 0.03
432 198 0.14
433 76 0.06
434 13 0.01
435 3 0.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (424 bp):
CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTTTTACAAAATG
ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGG
AATGGATCGTCTTAATACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTATAACAAGTT
CGAAAGTTCTGCCAAGAAACAAGAGAGAAACAATTCTCACGAAAAAGTTTTTAATTCAAAGACAA
AAAGTTTTTACAAAATGACAAACTATTTAGACCAATGATGCGATTTCCCGAGCATGGAATGTTCG
AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCTG
AAAAGTTTGACAAGTTTGAAGTTCATCCAAGAAC
Found at i:58050 original size:645 final size:640
Alignment explanation
Indices: 56174--58256 Score: 2138
Period size: 645 Copynumber: 3.2 Consensus size: 640
56164 AATCATATCA
* ** * * * *
56174 CAAGAGACAAAAAATTCTCATGTGAATTAGTTTTTAATTTAAAGACCAAAAGTTGTTCACAAAAT
1 CAAGAGA-GAAAAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTT-TTTACAAAAT
* * ** * *
56239 GACAAACTATTTAGACCAAATGGTACGATTTCCATAGCATGGAATGTTCAAAAAATTGCTCAAAA
64 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAG
* * * * * *
56304 GAATGGGTAGACTT-AAGTACTTTAAGCAAT-TGAAGTTATAAAAGAACTTGTGAAAGTTTGACA
129 GAATGGATCGTCTTGAA-TACTTTAAGGAATCT-AAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * * * *
56367 ACTTCGGAAGTTC-GTTCAAG-AACTAAGAGAGAAA-ACATTCTCATGTAAATAAGTTTTTAATT
192 AGTTCGAAAGTTCTG-CCAAGAAAC-AAGAGAGAAACA-ATTCTCACG-AAA-ACGTTTTTAATT
* * *
56429 TAAAGACTAAAAGTTGTTTACAAAATAACAAACTTTTTAGACCAAATGATGCAATTTCCTGAGCA
252 CAAAGACTAAAAGTTGTTTACAAAATAACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCA
* * * *
56494 TGGAATGCTCTAAAAATTGCTCGAAGGAATGGATCGTCTTGAGTACTTTAAGGACCCAAAGTTAT
317 TGGAATGTTCT-AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAT
* * * **
56559 AAAAGAACTCATAAAAGTTTAACAAGTTCGAAAGTTCAACCAAGAAGAAAGAGAGAAACAATTCT
381 AAAAGAACTCTTAAAAGTTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* ** * * *
56624 TATGTAAATAAATTTTAAATTCAAAGACCAAAAAGTTTTTTACAAAATGAAAAACTATTTAAACC
446 CACATAAATAAGTTTTTAATTCAAAGA-CAAAAAG-TTTTTACAAAATGACAAACTATTTAAACC
* * * * * * *
56689 AATTGATGCAATTTCTCAATCAT-GAAGTGTTCGGAAAAATTGTCGAAGGAATGGATAGTCTTG-
509 AAATGAAGCAATTTCCCGAGCATGGAA-TGTTCGG--AAATTGTCGAAGTAATGGATCGTCTTGA
* * * * * * * * * *
56752 ATGCTCTCAGGAATCGAAGTTATAAAAGAACTCTTAAATTTTTTAGAAG-TTCGAAAGTTCGTTC
571 ATACTTTCAGGAACCGAAGTTATAAAAGAACTCTGAAATGTTTGACAAGTTTAG-AAGTTCATCC
56816 AAGAAC
635 AAGAAC
56822 CAAGAGAGAGAAAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAATGGTTTTT-----
1 CAAGAGAGA-AAAATTCTCACATAAATAAGTTTTTAATTCAAAGACC-AAAA--GTTTTTACAAA
* * * * * * * *
56882 A--ACAAAC-AATTAAAACAGAATGAAGTGA-TTCCACGAGAATGGAATGTTCAGAAAATTTCTC
62 ATGACAAACTATTTAGACCA-AATGATGCGATTTCC-CGAGCATGGAATGTTCAAAAAATTGCTC
* * * * * *
56943 GAATGAATGGATCGCCTTGAATAATTTAAAGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA
125 GAAGGAATGGATCGTCTTGAATACTTTAAGGAATCTAAGTTATAAAAGAACTCGTAAAAGTTTGA
* * * *
57008 CAAGTTCTGAAA-TTCAT-CCAAGAACCAAAAGAGAAACAATTCTCAC-ATGAATCAGTTTTTTA
190 CAAGTTC-GAAAGTTC-TGCCAAGAAACAAGAGAGAAACAATTCTCACGA--AAAC-GTTTTTAA
* * * * **
57070 TTCAAAGACTAAAAGTTGTTTACAAAATTAGAAACTATTTAGACCTAATGATGAGATTTTTTGAG
250 TTCAAAGACTAAAAGTTGTTTACAAAATAACAAACTATTTAGACCAAATGATGCGATTTCCTGAG
* * * * *
57135 CATGGAATGTTCAAAAAATTACTCGAAA-GAAT-GATCGTCTTAAAAACTTTAAAGAACCAAAGT
315 CATGGAATGTTC-TAAAATTGCTC-AAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGT
* * * *
57198 TACAAAAGAACT-TATAAAAGTATAACAAGTTCAGAAGTTC-TACCAAGAATCAAGAGAGAAACA
378 TATAAAAGAACTCT-TAAAAGTTTAACAAGTTCGGAAGTTCAT-CCAAGAACCAAGAGAGAAACA
57261 ATTCTCACGA-AAAT--G-TTTTAATTCAAAGACAAAAAGTTTATTACAAAATGACAAACTATTT
441 ATTCTCAC-ATAAATAAGTTTTTAATTCAAAGACAAAAAGTTT-TTACAAAATGACAAACTATTT
* * *
57322 AAACCAAATGATA-CGATTTCCCGAGCACGAAATGTTCAGGAAATTGGTCGAA-TGAATGGATCG
504 AAACCAAATGA-AGCAATTTCCCGAGCATGGAATGTTC-GGAAATT-GTCGAAGT-AATGGATCG
*
57385 TCTTCAATACTTTCAGGAACCGAAGTTATAAAAGAACTCTGAAATGTTTGACAAGTTTAGAAGTT
565 TCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTCTGAAATGTTTGACAAGTTTAGAAGTT
57450 CATCCAAGAAC
630 CATCCAAGAAC
* * * *
57461 CTAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTTAAAGATCAAAAGTTTTATACAAAAT
1 CAAGAGAGAAA-AATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTTT-TACAAAAT
* *
57526 GACAAATTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAG
64 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAG
* * * *
57591 GAATGGATCGTCTTCAATACTTTAAGGAATCTAAGTTATAAAAGAACTCATAAAAGTATAACAAG
129 GAATGGATCGTCTTGAATACTTTAAGGAATCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* *
57656 TTCGAAAGTTCTGGCAAGAAACAAGAGAGAAACAATTCTCACGAAAACGTTTTTCATTCAAAGAC
194 TTCGAAAGTTCTGCCAAGAAACAAGAGAGAAACAATTCTCACGAAAACGTTTTTAATTCAAAGAC
* * * * *
57721 AAAAAGTT-TATTACAAAATGACAAACTATTTGGACC-AACGATGCGATTTCCCGAGCATGGAAT
259 TAAAAGTTGT-TTACAAAATAACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAAT
* * * *
57784 GTTCGTAAAATTGGTCAAAGGAATGGATCATCTTGAATACTCTT-TGGAACAAAAGTTATAAAAG
323 GTTC-TAAAATTGCTCAAAGGAATGGATCGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAG
* * * * * *
57848 AACTCTTAAATGTTTGAGAAGTCCGGAAGTTCATTCAAGAACCAAGAGAGAGAA-AATCCTCACA
386 AACTCTTAAAAGTTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGA-AACAATTCTCACA
* *
57912 TAAATAAGTTTTTAATTTAAAGA-ATAAAAGTCTTTTACAAAATGACAAACTATTAAAACCAAAT
450 TAAATAAGTTTTTAATTCAAAGACA-AAAAGT-TTTTACAAAATGACAAACTATTTAAACCAAAT
*
57976 GAAGCAATTTCCCGAGCATGGAATGTTCGGTAAATTGCTCGAAGTAATGGATCGCCTTGAATACT
513 GAAGCAATTTCCCGAGCATGGAATGTTCGG-AAATTG-TCGAAGTAATGGATCGTCTTGAATACT
* * * * * *
58041 TTAAGGAACCGAATTTATAAAATAACTC-GTAAAAGATTGACAAGTTCTA-AAATTCATCCAAGA
576 TTCAGGAACCGAAGTTATAAAAGAACTCTG-AAATGTTTGACAAGTT-TAGAAGTTCATCCAAGA
58104 AC
639 AC
* * *
58106 CAAGAGAGAAACAATTCTCACATGAATTAGATTTTT-ATTCAAAGACCAAAATTTGTTTACAAAA
1 CAAGAGAGAAA-AATTCTCACATAAATAAG-TTTTTAATTCAAAGACCAAAAGTT-TTTACAAAA
* * * * * *
58170 TTAAAAACTATTTAGACTC-AATGATGCGATTTCCCAAGCATTGAATGTTCAAAAAATTGGTCTA
63 TGACAAACTATTTAGAC-CAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGA
*
58234 AGGAATGGATCATCTTGAATACT
127 AGGAATGGATCGTCTTGAATACT
58257 CTCAAAATCG
Statistics
Matches: 1190, Mismatches: 180, Indels: 133
0.79 0.12 0.09
Matches are distributed among these distances:
636 5 0.00
637 9 0.01
638 76 0.06
639 113 0.09
640 6 0.01
641 41 0.03
642 227 0.19
643 216 0.18
644 147 0.12
645 288 0.24
646 13 0.01
647 1 0.00
648 39 0.03
649 4 0.00
650 2 0.00
651 3 0.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (640 bp):
CAAGAGAGAAAAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTACAAAATGA
CAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGA
ATGGATCGTCTTGAATACTTTAAGGAATCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
CGAAAGTTCTGCCAAGAAACAAGAGAGAAACAATTCTCACGAAAACGTTTTTAATTCAAAGACTA
AAAGTTGTTTACAAAATAACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTT
CTAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
TTAAAAGTTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA
AGTTTTTAATTCAAAGACAAAAAGTTTTTACAAAATGACAAACTATTTAAACCAAATGAAGCAAT
TTCCCGAGCATGGAATGTTCGGAAATTGTCGAAGTAATGGATCGTCTTGAATACTTTCAGGAACC
GAAGTTATAAAAGAACTCTGAAATGTTTGACAAGTTTAGAAGTTCATCCAAGAAC
Found at i:58688 original size:62 final size:57
Alignment explanation
Indices: 58618--58790 Score: 240
Period size: 62 Copynumber: 2.9 Consensus size: 57
58608 CAAAAAGGAG
*
58618 ACCCAAAAAAAAGGGAAAGAAAAAGTCAAGATGAAAACCCACAAAGGGCATTTTGAA
1 ACCCAAAAAAAAGGGAAAGAAAAAGTCAAGATGAAAACCCGCAAAGGGCATTTTGAA
* *
58675 ACCCAAAGAAAAAAAGGGGGAAAGAAAAAGTTAAGATGAAAATCCGCAAAGGGCATTTTGAA
1 ACCC--A-AAAAAAA--GGGAAAGAAAAAGTCAAGATGAAAACCCGCAAAGGGCATTTTGAA
* *
58737 ACCC-AAAAAAAGGGAAAGAAAAAGTCAAGATGAAAAACCTGCAAGGGGCATTTT
1 ACCCAAAAAAAAGGGAAAGAAAAAGTCAAGATG-AAAACCCGCAAAGGGCATTTT
58791 AAAAATCTAT
Statistics
Matches: 103, Mismatches: 7, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
56 20 0.19
57 22 0.21
58 7 0.07
59 1 0.01
60 7 0.07
62 46 0.45
ACGTcount: A:0.52, C:0.14, G:0.22, T:0.12
Consensus pattern (57 bp):
ACCCAAAAAAAAGGGAAAGAAAAAGTCAAGATGAAAACCCGCAAAGGGCATTTTGAA
Found at i:59663 original size:17 final size:17
Alignment explanation
Indices: 59643--59675 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
59633 GAAAGAAAGA
59643 AAAAAAAAAACAAAAAC
1 AAAAAAAAAACAAAAAC
*
59660 AAAAAAAAAAGAAAAA
1 AAAAAAAAAACAAAAA
59676 AAGAAAAAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.91, C:0.06, G:0.03, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAACAAAAAC
Found at i:59663 original size:18 final size:19
Alignment explanation
Indices: 59642--59683 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
59632 GGAAAGAAAG
*
59642 AAAAAAAAAA-ACAAAAAC
1 AAAAAAAAAAGAAAAAAAC
*
59660 AAAAAAAAAAGAAAAAAAG
1 AAAAAAAAAAGAAAAAAAC
59679 AAAAA
1 AAAAA
59684 GGAGTGGTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.90, C:0.05, G:0.05, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAGAAAAAAAC
Found at i:59675 original size:11 final size:11
Alignment explanation
Indices: 59634--59677 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
59624 TAAAAGAAGG
59634 AAAGAAAGAAAA
1 AAAGAAA-AAAA
*
59646 AAA-AAAACAA
1 AAAGAAAAAAA
*
59656 AAACAAAAAAA
1 AAAGAAAAAAA
59667 AAAGAAAAAAA
1 AAAGAAAAAAA
59678 GAAAAAGGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 6 0.21
11 19 0.68
12 3 0.11
ACGTcount: A:0.89, C:0.05, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAGAAAAAAA
Found at i:59682 original size:8 final size:8
Alignment explanation
Indices: 59617--59683 Score: 59
Period size: 8 Copynumber: 8.6 Consensus size: 8
59607 AATTTCACCT
*
59617 AAAAAAAT
1 AAAAAAAG
*
59625 AAAAGAAGG
1 AAAA-AAAG
*
59634 AAAGAAAG
1 AAAAAAAG
59642 AAAAAAA-
1 AAAAAAAG
*
59649 AAAACAA-
1 AAAAAAAG
*
59656 AAACAAA-
1 AAAAAAAG
59663 AAAAAAAG
1 AAAAAAAG
59671 AAAAAAAG
1 AAAAAAAG
59679 AAAAA
1 AAAAA
59684 GGAGTGGTCG
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
7 17 0.35
8 26 0.54
9 5 0.10
ACGTcount: A:0.85, C:0.03, G:0.10, T:0.01
Consensus pattern (8 bp):
AAAAAAAG
Found at i:60206 original size:112 final size:112
Alignment explanation
Indices: 60003--60284 Score: 359
Period size: 112 Copynumber: 2.5 Consensus size: 112
59993 TTTTTAATCT
* * * * * * * *
60003 TTTTATACACCTTACAACCTTCTTTAAGCATTTTTGCATCGGAAAAATGATTAATGGACTAATGA
1 TTTTATCCACCTTACAACCTTGTTCAAGCATTTTTGCATTGAAAAAACGGTTAATGGACCAATGA
* *
60068 TTCGTAATCTTTTCATTCACGCGAGCTTTGC-CTCCAATAAAATTCAA
66 TTCGTAATCTTTTCATTCACACGAGCTTT-CTCTCCAATAAAACTCAA
60115 TTTTATCCACCTTACAACCTTGTTCAAGCATTTTTGCATTGAAAAAACGGTTAATGGACCAATGA
1 TTTTATCCACCTTACAACCTTGTTCAAGCATTTTTGCATTGAAAAAACGGTTAATGGACCAATGA
* * *
60180 TTCGTAATCTTTTCATTCATATGAGCTTTCTCTCCAATAAAACTCAG
66 TTCGTAATCTTTTCATTCACACGAGCTTTCTCTCCAATAAAACTCAA
* * *
60227 TTTCATCCACCTTACAGCCTTGATTCAAGCATTTCCTTTGCATTTGAAATAACGGTTA
1 TTTTATCCACCTTACAACCTTG-TTCAAGCA-TT--TTTGCA-TTGAAAAAACGGTTA
60285 CTGGTCTAAC
Statistics
Matches: 148, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
111 1 0.01
112 117 0.79
113 8 0.05
114 2 0.01
116 6 0.04
117 14 0.09
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.37
Consensus pattern (112 bp):
TTTTATCCACCTTACAACCTTGTTCAAGCATTTTTGCATTGAAAAAACGGTTAATGGACCAATGA
TTCGTAATCTTTTCATTCACACGAGCTTTCTCTCCAATAAAACTCAA
Found at i:60735 original size:49 final size:50
Alignment explanation
Indices: 60650--61009 Score: 290
Period size: 49 Copynumber: 7.4 Consensus size: 50
60640 TCTATAGGTT
* * * * *
60650 TGAAGGGAAAGATTGAATCCACAACAGTC-AATCTTGTACCATGA-AGATA
1 TGAAGGGAAAGGTTGAAGCCGCAAC-GGCGAACCTTGTACCATGAGAGATA
* * *
60699 TAAAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACC-TTAGAGACA
1 TGAAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCATGAGAGATA
* * * * * *
60748 TGATGGGAAAGATTGAAGCCGCAACAGTGAATCTTATACCATGA-AGATA
1 TGAAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCATGAGAGATA
* * * * * * **
60797 TGGAGGGAAAGGTTGAA-CCTGCAACGACAAACCTTATATC-TTAGAGACG
1 TGAAGGGAAAGGTTGAAGCC-GCAACGGCGAACCTTGTACCATGAGAGATA
* * *
60846 TGATGGGAAAGATTGAAGCCGCAACGGCGAATCTTGTACCAT-AGAGATA
1 TGAAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCATGAGAGATA
* * * * * *
60895 TGGAGGGAAAGGTT-AAGACGCAATGGTGAACCTTGTACC-TTAGAGATG
1 TGAAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCATGAGAGATA
* * * * *
60943 TGATGGGAAAGATTGAAGCCGTAATGGCGAATCTTGTACCATG-GAGATA
1 TGAAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCATGAGAGATA
* *
60992 TGGAGGGATAGGTTGAAG
1 TGAAGGGAAAGGTTGAAG
61010 TCGTAATGAC
Statistics
Matches: 241, Mismatches: 60, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
47 1 0.00
48 46 0.19
49 188 0.78
50 6 0.02
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (50 bp):
TGAAGGGAAAGGTTGAAGCCGCAACGGCGAACCTTGTACCATGAGAGATA
Found at i:60830 original size:98 final size:98
Alignment explanation
Indices: 60654--61088 Score: 486
Period size: 98 Copynumber: 4.4 Consensus size: 98
60644 TAGGTTTGAA
* * * **
60654 GGGAAAGATTGAATCCACAACAGTCAATCTTGTACCATGAAGATATAAAGGGAAAGGTTGAAGCC
1 GGGAAAGATTGAAGCCGCAACAGTGAATCTTGTACCATGAAGATATGGAGGGAAAGGTTGAAGCC
* * *
60719 GCAACGGCGAACCTTGTACCTTAGAGACATGAT
66 GCAACGACGAACCTTATACCTTAGAGACGTGAT
*
60752 GGGAAAGATTGAAGCCGCAACAGTGAATCTTATACCATGAAGATATGGAGGGAAAGGTTGAA-CC
1 GGGAAAGATTGAAGCCGCAACAGTGAATCTTGTACCATGAAGATATGGAGGGAAAGGTTGAAGCC
* *
60816 TGCAACGACAAACCTTATATCTTAGAGACGTGAT
66 -GCAACGACGAACCTTATACCTTAGAGACGTGAT
* * *
60850 GGGAAAGATTGAAGCCGCAACGGCGAATCTTGTACCAT-AGAGATATGGAGGGAAAGGTT-AAGA
1 GGGAAAGATTGAAGCCGCAACAGTGAATCTTGTACCATGA-AGATATGGAGGGAAAGGTTGAAGC
* ** * *
60913 CGCAATGGTGAACCTTGTACCTTAGAGATGTGAT
65 CGCAACGACGAACCTTATACCTTAGAGACGTGAT
* ** * * * *
60947 GGGAAAGATTGAAGCCGTAATGGCGAATCTTGTACCATGGAGATATGGAGGGATAGGTTGAAGTC
1 GGGAAAGATTGAAGCCGCAACAGTGAATCTTGTACCATGAAGATATGGAGGGAAAGGTTGAAGCC
* * *
61012 GTAATGACGAACCTTATACCTTAGAG--GTGAAAA
66 GCAACGACGAACCTTATACCTTAGAGACGTG--AT
* * * *
61045 GGGAAAGATTGAGGCCGCAGC-GATGAATCTTATACCCTGAAGAT
1 GGGAAAGATTGAAGCCGCAACAG-TGAATCTTGTACCATGAAGAT
61089 GAGATAAAGC
Statistics
Matches: 289, Mismatches: 40, Indels: 16
0.84 0.12 0.05
Matches are distributed among these distances:
96 3 0.01
97 86 0.30
98 200 0.69
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.22
Consensus pattern (98 bp):
GGGAAAGATTGAAGCCGCAACAGTGAATCTTGTACCATGAAGATATGGAGGGAAAGGTTGAAGCC
GCAACGACGAACCTTATACCTTAGAGACGTGAT
Found at i:61075 original size:195 final size:195
Alignment explanation
Indices: 60650--61088 Score: 528
Period size: 195 Copynumber: 2.2 Consensus size: 195
60640 TCTATAGGTT
* * *
60650 TGAAGGGAAAGATTGAATCCACAACAGTC-AATCTTGTACCATGAAGATATAAAGGGAAAGGTTG
1 TGAAGGGAAAGATTGAAGCCGCAAC-GACGAATCTTGTACCATGAAGATATAAAGGGAAAGGTTG
* *
60714 AAGCCGCAACGGCGAACCTTGTACCTTAGAGACATGATGGGAAAGATTGAAGCCGCAACAGTGAA
65 AAGACGCAACGGCGAACCTTGTACCTTAGAGACATGATGGGAAAGATTGAAGCCGCAACAGCGAA
*
60779 TCTTATACCATGAAGATATGGAGGGAAAGGTTGAACCTGCAACGACAAACCTTATATCTTAGAGA
130 TCTTATACCATGAAGATATGGAGGGAAAGGTTGAACCTGCAACGACAAACCTTATACCTTAGAGA
60844 CG
195 -G
* * **
60846 TGATGGGAAAGATTGAAGCCGCAACGGCGAATCTTGTACCAT-AGAGATATGGAGGGAAAGGTT-
1 TGAAGGGAAAGATTGAAGCCGCAACGACGAATCTTGTACCATGA-AGATATAAAGGGAAAGGTTG
* * ** * **
60909 AAGACGCAATGGTGAACCTTGTACCTTAGAGATGTGATGGGAAAGATTGAAGCCGTAATGGCGAA
65 AAGACGCAACGGCGAACCTTGTACCTTAGAGACATGATGGGAAAGATTGAAGCCGCAACAGCGAA
* * * * * * *
60974 TCTTGTACCATGGAGATATGGAGGGATAGGTTGAA-GTCGTAATGACGAACCTTATACCTTAGAG
130 TCTTATACCATGAAGATATGGAGGGAAAGGTTGAACCT-GCAACGACAAACCTTATACCTTAGAG
61038 -G
194 AG
* * * * *
61039 TGAAAAGGGAAAGATTGAGGCCGCAGCGATGAATCTTATACCCTGAAGAT
1 TG--AAGGGAAAGATTGAAGCCGCAACGACGAATCTTGTACCATGAAGAT
61089 GAGATAAAGC
Statistics
Matches: 207, Mismatches: 30, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
193 3 0.01
194 1 0.00
195 150 0.72
196 53 0.26
ACGTcount: A:0.35, C:0.15, G:0.28, T:0.22
Consensus pattern (195 bp):
TGAAGGGAAAGATTGAAGCCGCAACGACGAATCTTGTACCATGAAGATATAAAGGGAAAGGTTGA
AGACGCAACGGCGAACCTTGTACCTTAGAGACATGATGGGAAAGATTGAAGCCGCAACAGCGAAT
CTTATACCATGAAGATATGGAGGGAAAGGTTGAACCTGCAACGACAAACCTTATACCTTAGAGAG
Found at i:61409 original size:42 final size:42
Alignment explanation
Indices: 61302--62098 Score: 721
Period size: 42 Copynumber: 19.5 Consensus size: 42
61292 CCAAGCAAAG
** *
61302 CATCATCCAATCTCTTACCCCAATCATAGGGCAGATTGAAG-
1 CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
* * ** * * *
61343 C--CATCGAATCTTTTACCCAAATCATCGGGTAAATTGAAGA
1 CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
* * * * *
61383 CACCATTCAATCCCTTACCCTGATCATAGGGCATATTGAAG-
1 CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
** * *
61424 --TCATCCAATCTCTTACCCCCATAATGGGGCAGATTTAAGA
1 CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
* *
61464 CATCATCCAATCTCTTACCCTCTATCATGAGGCAGATTGAAGA
1 CATCATCCAATCTCTTACCCT-GATCATGGGGCAGATTGAAGA
* * *
61507 CATCATCCAATCTCTTACCTTGATCATCGGGTAGATTGAAGA
1 CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
* * *
61549 CGTCATCCAATCTCTTACCCCGATCATGGGGTAGATTGAAG-
1 CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
* * *
61590 C--CATCCAATCTCTTA-CCTCAATCATTGGGCAGATTAAAGA
1 CATCATCCAATCTCTTACCCT-GATCATGGGGCAGATTGAAGA
61630 CATCATCCAATCTCTTA-CCTCGATCATGGGGCAGATTGAAG-
1 CATCATCCAATCTCTTACCCT-GATCATGGGGCAGATTGAAGA
* * *
61671 C--CATCCAATCTCTTACCCCGATCATGGGGTAGATTAAAGA
1 CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
* * * *
61711 CATCATCCAATATCTTACCCAGATCATGGGGCAAAATGAAG-
1 CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
* * *
61752 C--CATCCAATCTCTTTCCCCGATCATGGGGTAGATTGAAGA
1 CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
*
61792 CATCATCCAATCTCTTATCCC-GATCATGGGGCAGATTAAAGA
1 CATCATCCAATCTCTTA-CCCTGATCATGGGGCAGATTGAAGA
** * * * *
61834 TGTCATCAAATTTCTTACCCCGATCATGGGGTAGATTGAAG-
1 CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
* * *
61875 --TCATCTAATCTCTTACCCCGATCATGGGACAGATTGAAGA
1 CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
* ** * *
61915 CATCACCCAATCTCTTACCCCAACCATGAGGCAGATTGAAG-
1 CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
* * * * *
61956 --TCATTCAATCTCTTACCCTAATAATAGGGCATATTGAAGA
1 CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
* * ** *
61996 CA--ATTCAATCT-TTCACCCTAATCAAAGGGCAAATTGAAGA
1 CATCATCCAATCTCTT-ACCCTGATCATGGGGCAGATTGAAGA
* * * *
62036 CATCAACCAATCTCTTACCTTGATCATAGGGCAAATTGAAGA
1 CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
* *
62078 CATCATCAAATCTTTTACCCT
1 CATCATCCAATCTCTTACCCT
62099 TAAATCAAGA
Statistics
Matches: 626, Mismatches: 100, Indels: 59
0.80 0.13 0.08
Matches are distributed among these distances:
38 2 0.00
39 224 0.36
40 40 0.06
41 7 0.01
42 311 0.50
43 42 0.07
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
CATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGA
Found at i:61464 original size:81 final size:81
Alignment explanation
Indices: 61302--62081 Score: 745
Period size: 81 Copynumber: 9.6 Consensus size: 81
61292 CCAAGCAAAG
** * * *
61302 CATCATCCAATCTCTTACCCCAATCATAGGGCAGATTGAAGCCATCGAATCTTTTACCCAAATCA
1 CATCATCCAATCTCTTACCCTGATCATAGGGCAGATTGAAGCCATCCAATCTCTTACCCCAATCA
* *
61367 TCGGGTAAATTGAAGA
66 TGGGGTAGATTGAAGA
* * * * * * *
61383 CACCATTCAATCCCTTACCCTGATCATAGGGCATATTGAAGTCATCCAATCTCTTACCCCCATAA
1 CATCATCCAATCTCTTACCCTGATCATAGGGCAGATTGAAGCCATCCAATCTCTTACCCCAATCA
* *
61448 TGGGGCAGATTTAAGA
66 TGGGGTAGATTGAAGA
* **
61464 CATCATCCAATCTCTTACCCTCTATCAT-GAGGCAGATTGAAGACATCATCCAATCTCTTACCTT
1 CATCATCCAATCTCTTACCCT-GATCATAG-GGCAGATTGAAG-C--CATCCAATCTCTTACCCC
* *
61528 GATCATCGGGTAGATTGAAGA
61 AATCATGGGGTAGATTGAAGA
* * * * *
61549 CGTCATCCAATCTCTTACCCCGATCATGGGGTAGATTGAAGCCATCCAATCTCTTACCTCAATCA
1 CATCATCCAATCTCTTACCCTGATCATAGGGCAGATTGAAGCCATCCAATCTCTTACCCCAATCA
* * *
61614 TTGGGCAGATTAAAGA
66 TGGGGTAGATTGAAGA
* *
61630 CATCATCCAATCTCTTA-CCTCGATCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCCGATC
1 CATCATCCAATCTCTTACCCT-GATCATAGGGCAGATTGAAGCCATCCAATCTCTTACCCCAATC
*
61694 ATGGGGTAGATTAAAGA
65 ATGGGGTAGATTGAAGA
* * * * * * *
61711 CATCATCCAATATCTTACCCAGATCATGGGGCAAAATGAAGCCATCCAATCTCTTTCCCCGATCA
1 CATCATCCAATCTCTTACCCTGATCATAGGGCAGATTGAAGCCATCCAATCTCTTACCCCAATCA
61776 TGGGGTAGATTGAAGA
66 TGGGGTAGATTGAAGA
* * * * * *
61792 CATCATCCAATCTCTTATCCC-GATCATGGGGCAGATTAAAGATGTCATCAAATTTCTTACCCCG
1 CATCATCCAATCTCTTA-CCCTGATCATAGGGCAGATT---GAAGCCATCCAATCTCTTACCCCA
61856 ATCATGGGGTAGATTGAAG-
62 ATCATGGGGTAGATTGAAGA
* * *
61875 --TCATCTAATCTCTTACCCCGATCAT-GGGACAGATTGAAGACATCACCCAATCTCTTACCCCA
1 CATCATCCAATCTCTTACCCTGATCATAGGG-CAGATTGAAG-C--CATCCAATCTCTTACCCCA
* * *
61937 ACCATGAGGCAGATTGAAG-
62 ATCATGGGGTAGATTGAAGA
* * * * * * *
61956 --TCATTCAATCTCTTACCCTAATAATAGGGCATATTGAAGACAATTCAATCT-TTCACCCTAAT
1 CATCATCCAATCTCTTACCCTGATCATAGGGCAGATTGAAG-CCATCCAATCTCTT-ACCCCAAT
** * *
62018 CAAAGGGCAAATTGAAGA
64 CATGGGGTAGATTGAAGA
* * * *
62036 CATCAACCAATCTCTTACCTTGATCATAGGGCAAATTGAAGACATC
1 CATCATCCAATCTCTTACCCTGATCATAGGGCAGATTGAAGCCATC
62082 ATCAAATCTT
Statistics
Matches: 584, Mismatches: 93, Indels: 44
0.81 0.13 0.06
Matches are distributed among these distances:
78 5 0.01
79 26 0.04
80 8 0.01
81 381 0.65
82 57 0.10
83 1 0.00
84 54 0.09
85 52 0.09
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (81 bp):
CATCATCCAATCTCTTACCCTGATCATAGGGCAGATTGAAGCCATCCAATCTCTTACCCCAATCA
TGGGGTAGATTGAAGA
Found at i:61648 original size:123 final size:122
Alignment explanation
Indices: 61302--62081 Score: 719
Period size: 123 Copynumber: 6.4 Consensus size: 122
61292 CCAAGCAAAG
* * * *
61302 CATCATCCAATCTCTTACCCCAATCATAGGGCAGATTGAAGCCATCGAATCTTTTACCCAAATCA
1 CATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCCATCCAATCTCTTACCC-AATCA
* * * * * * * *
61367 TCGGGTAAATTGAAGACACCATTCAATCCCTTACCCTGATCATAGGGCATATTGAAG-
65 TGGGGCAGATTGAAGACATCATCCAATCTCTTACCCCGATCATAGGGCAGATTGAAGA
* * * *
61424 --TCATCCAATCTCTTACCCCCATAATGGGGCAGATTTAAGACATCATCCAATCTCTTACCCTCT
1 CATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG-C--CATCCAATCTCTTA-CC-CA
* ** * *
61487 ATCATGAGGCAGATTGAAGACATCATCCAATCTCTTACCTTGATCATCGGGTAGATTGAAGA
61 ATCATGGGGCAGATTGAAGACATCATCCAATCTCTTACCCCGATCATAGGGCAGATTGAAGA
* *
61549 CGTCATCCAATCTCTTACCCCGATCATGGGGTAGATTGAAGCCATCCAATCTCTTACCTCAATCA
1 CATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCCATCCAATCTCTTACC-CAATCA
* * * *
61614 TTGGGCAGATTAAAGACATCATCCAATCTCTTACCTCGATCATGGGGCAGATTGAAG-
65 TGGGGCAGATTGAAGACATCATCCAATCTCTTACCCCGATCATAGGGCAGATTGAAGA
* * *
61671 C--CATCCAATCTCTTACCCCGATCATGGGGTAGATTAAAGACATCATCCAATATCTTACCCAGA
1 CATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG-C--CATCCAATCTCTTACCCA-A
* * * * *
61734 TCATGGGGCAAAATGAAG-C--CATCCAATCTCTTTCCCCGATCATGGGGTAGATTGAAGA
62 TCATGGGGCAGATTGAAGACATCATCCAATCTCTTACCCCGATCATAGGGCAGATTGAAGA
* * * * * *
61792 CATCATCCAATCTCTTATCCCGATCATGGGGCAGATTAAAGATGTCATCAAATTTCTTACCCCGA
1 CATCATCCAATCTCTTACCCCGATCATGGGGCAGATT---GAAGCCATCCAATCTCTTA-CCCAA
* *
61857 TCATGGGGTAGATTGAAG---TCATCTAATCTCTTACCCCGATCAT-GGGACAGATTGAAGA
62 TCATGGGGCAGATTGAAGACATCATCCAATCTCTTACCCCGATCATAGGG-CAGATTGAAGA
* * * * * * *
61915 CATCACCCAATCTCTTACCCCAACCATGAGGCAGATTGAAGTCATTCAATCTCTTACCCTAATAA
1 CATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCCATCCAATCTCTTACCC-AATCA
* * * ** * *
61980 TAGGGCATATTGAAGACA--ATTCAATCT-TTCACCCTAATCAAAGGGCAAATTGAAGA
65 TGGGGCAGATTGAAGACATCATCCAATCTCTT-ACCCCGATCATAGGGCAGATTGAAGA
* ** * * *
62036 CATCAACCAATCTCTTACCTTGATCATAGGGCAAATTGAAGACATC
1 CATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCCATC
62082 ATCAAATCTT
Statistics
Matches: 549, Mismatches: 82, Indels: 55
0.80 0.12 0.08
Matches are distributed among these distances:
119 3 0.01
120 139 0.25
121 64 0.12
122 10 0.02
123 225 0.41
124 69 0.13
125 1 0.00
126 3 0.01
127 35 0.06
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (122 bp):
CATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCAATCAT
GGGGCAGATTGAAGACATCATCCAATCTCTTACCCCGATCATAGGGCAGATTGAAGA
Found at i:62014 original size:40 final size:40
Alignment explanation
Indices: 61922--62079 Score: 144
Period size: 40 Copynumber: 3.9 Consensus size: 40
61912 AGACATCACC
* * * * *
61922 CAATCTCTTACCCCAA-CCATGAGGCAGATTGAAGTC-ATT
1 CAATCTCTTACCCTAATCAAAG-GGCAAATTGAAGACAATT
*
61961 CAATCTCTTACCCTAAT-AATAGGGCATATTGAAGACAATT
1 CAATCTCTTACCCTAATCAA-AGGGCAAATTGAAGACAATT
**
62001 CAATCT-TTCACCCTAATCAAAGGGCAAATTGAAGACATCAAC
1 CAATCTCTT-ACCCTAATCAAAGGGCAAATTGAAGACA--ATT
* * *
62043 CAATCTCTTACCTTGATCATAGGGCAAATTGAAGACA
1 CAATCTCTTACCCTAATCAAAGGGCAAATTGAAGACA
62080 TCATCAAATC
Statistics
Matches: 100, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
39 30 0.30
40 34 0.34
41 2 0.02
42 32 0.32
43 2 0.02
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (40 bp):
CAATCTCTTACCCTAATCAAAGGGCAAATTGAAGACAATT
Found at i:63192 original size:18 final size:18
Alignment explanation
Indices: 63169--63205 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
63159 TGTAATATAG
63169 TTATATATT-TATTTTATT
1 TTATATATTGT-TTTTATT
63187 TTATATATTGTTTTTATT
1 TTATATATTGTTTTTATT
63205 T
1 T
63206 CCTTATTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (18 bp):
TTATATATTGTTTTTATT
Found at i:65552 original size:17 final size:17
Alignment explanation
Indices: 65530--65564 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
65520 TCATAGGGCC
65530 TATAATCCATTCTTGGA
1 TATAATCCATTCTTGGA
65547 TATAATCCATTCTTGGA
1 TATAATCCATTCTTGGA
65564 T
1 T
65565 TTTATTCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (17 bp):
TATAATCCATTCTTGGA
Found at i:74484 original size:4 final size:4
Alignment explanation
Indices: 74468--74535 Score: 129
Period size: 4 Copynumber: 17.2 Consensus size: 4
74458 TGGTTCTAAT
74468 TTTA TTT- TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
74515 TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA T
74536 ATTTATAAAA
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 3 0.05
4 60 0.95
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:74979 original size:50 final size:49
Alignment explanation
Indices: 74919--75034 Score: 126
Period size: 50 Copynumber: 2.3 Consensus size: 49
74909 TACTGCAACC
* * * * * *
74919 TTAGGAAGATAGGATTGGATATTGTAG-CTTTATCCTACTCCACTATATCT
1 TTAGGGAGATAGGATTGG-TAATGTAGCCATAATCC-AATCCACTATAACT
*
74969 TTAGGGAGATAGGACTTGGTAATGTAGCCATAATCCAATCCACTGTAACT
1 TTAGGGAGATAGGA-TTGGTAATGTAGCCATAATCCAATCCACTATAACT
*
75019 TTAGGGATATAGGATT
1 TTAGGGAGATAGGATT
75035 TGACTTCATA
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
49 2 0.04
50 44 0.79
51 10 0.18
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.34
Consensus pattern (49 bp):
TTAGGGAGATAGGATTGGTAATGTAGCCATAATCCAATCCACTATAACT
Found at i:75387 original size:42 final size:42
Alignment explanation
Indices: 75279--75526 Score: 286
Period size: 42 Copynumber: 5.8 Consensus size: 42
75269 ACTTCTGTAG
* * *
75279 CTTCAATTTGCCCCTCTGGATTAGAGGTAAAAGACTGGATGGTA
1 CTTCAATCTGCCCCTCTAGATTAGGGGTAAAAGACTGGAT-G-A
75323 GCTTCAATCTGCCCCTCTAGATTAGGGGTAAAAGACTGGATGA
1 -CTTCAATCTGCCCCTCTAGATTAGGGGTAAAAGACTGGATGA
* *
75366 CTTTAATCTGCCCCTCTAGATTAGGGGTAAAAGATTGGATGA
1 CTTCAATCTGCCCCTCTAGATTAGGGGTAAAAGACTGGATGA
*
75408 CTTCAATCTTCCCCTCT-GAATTAGGGGTAAAAGACTGGAT-A
1 CTTCAATCTGCCCCTCTAG-ATTAGGGGTAAAAGACTGGATGA
* * * * *
75449 GCTTCAATTTGCCCCTCTAGAATTAGGGTTAAAAGATTGGAAGG
1 -CTTCAATCTGCCCCTCTAG-ATTAGGGGTAAAAGACTGGATGA
* * *
75493 CTTCAATATACCCTTCTAGATT-GAGGGTAAAAGA
1 CTTCAATCTGCCCCTCTAGATTAG-GGGTAAAAGA
75527 TTAGATGGTG
Statistics
Matches: 180, Mismatches: 18, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
41 3 0.02
42 102 0.57
43 37 0.21
44 1 0.01
45 37 0.21
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (42 bp):
CTTCAATCTGCCCCTCTAGATTAGGGGTAAAAGACTGGATGA
Found at i:75715 original size:42 final size:42
Alignment explanation
Indices: 75669--75764 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
75659 TAGAGATGTA
* *
75669 AGATTTGCCTTTACAACTCCAATCTAGC-CCTTTACAGCTTTG
1 AGATTCGCCTTTACAACTCCAATCTA-CTCCTCTACAGCTTTG
** * * *
75711 AGATTCGCCTTTACGGCTTCAATCTACTTCTCTACAGTTTTG
1 AGATTCGCCTTTACAACTCCAATCTACTCCTCTACAGCTTTG
75753 AGATTCGCCTTT
1 AGATTCGCCTTT
75765 GCGGCCTCAA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
41 1 0.02
42 45 0.98
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.39
Consensus pattern (42 bp):
AGATTCGCCTTTACAACTCCAATCTACTCCTCTACAGCTTTG
Found at i:75841 original size:49 final size:49
Alignment explanation
Indices: 75787--75979 Score: 167
Period size: 49 Copynumber: 4.0 Consensus size: 49
75777 TGTTTCTCTT
*** * *
75787 CATCTTTAGGGTATAAGATTCGTTGTTATGGCTTCAATCTTTCTCTTCA
1 CATCTTTAGGGTATAAGATTCACCGTTACGGCTTCAATCTTTCCCTTCA
* * * * * * *
75836 TATCTTTAGGGTATAAGGTTCGCCGTTGCGACTTCAACCTTTCCCTCCA
1 CATCTTTAGGGTATAAGATTCACCGTTACGGCTTCAATCTTTCCCTTCA
* * * * *
75885 CAACTCTAGGGTATAAGGTTCACCATTATGGCTTCAATCTTTCCCTTCA
1 CATCTTTAGGGTATAAGATTCACCGTTACGGCTTCAATCTTTCCCTTCA
* * * * *
75934 CGTCTTTAAGATATAAGATTCA---TTGCGGCTTCAATCTTTCCATTCA
1 CATCTTTAGGGTATAAGATTCACCGTTACGGCTTCAATCTTTCCCTTCA
75980 TGTCTTCTAG
Statistics
Matches: 115, Mismatches: 29, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
46 21 0.18
49 94 0.82
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (49 bp):
CATCTTTAGGGTATAAGATTCACCGTTACGGCTTCAATCTTTCCCTTCA
Found at i:76956 original size:7 final size:7
Alignment explanation
Indices: 76944--77010 Score: 59
Period size: 7 Copynumber: 9.7 Consensus size: 7
76934 CAACCTCTCA
76944 TTTTTCT
1 TTTTTCT
76951 TTTTTCT
1 TTTTTCT
*
76958 TTTCTCT
1 TTTTTCT
*
76965 TTTCTCT
1 TTTTTCT
*
76972 TTTCTC-
1 TTTTTCT
*
76978 TTTCT-T
1 TTTTTCT
76984 TTTTTCT
1 TTTTTCT
76991 TTTCTT-T
1 TTT-TTCT
76998 TTTTCTCT
1 TTTT-TCT
77006 TTTTT
1 TTTTT
77011 TGCATGAAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
6 10 0.19
7 36 0.68
8 7 0.13
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (7 bp):
TTTTTCT
Found at i:76960 original size:13 final size:12
Alignment explanation
Indices: 76944--77011 Score: 64
Period size: 13 Copynumber: 5.2 Consensus size: 12
76934 CAACCTCTCA
76944 TTTTTCTTTTTT
1 TTTTTCTTTTTT
76956 CTTTTCTCTTTTCTCT
1 -TTTT-TCTTTT-T-T
* *
76972 TTTCTCTTTCTT
1 TTTTTCTTTTTT
76984 TTTTTCTTTTCTT
1 TTTTTCTTTT-TT
76997 TTTTTCTCTTTTT
1 TTTTTCT-TTTTT
77010 TT
1 TT
77012 GCATGAAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
12 9 0.20
13 18 0.39
14 14 0.30
15 4 0.09
16 1 0.02
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTTTCTTTTTT
Found at i:76962 original size:12 final size:12
Alignment explanation
Indices: 76952--77000 Score: 62
Period size: 12 Copynumber: 3.9 Consensus size: 12
76942 CATTTTTCTT
*
76952 TTTTCTTTTCTC
1 TTTTCTTTTTTC
*
76964 TTTTCTCTTTTC
1 TTTTCTTTTTTC
76976 TCTTTCTTTTTTTC
1 T-TTTC-TTTTTTC
76990 TTTTCTTTTTT
1 TTTTCTTTTTT
77001 TCTCTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
12 17 0.53
13 8 0.25
14 7 0.22
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:76967 original size:14 final size:13
Alignment explanation
Indices: 76944--77011 Score: 77
Period size: 14 Copynumber: 5.2 Consensus size: 13
76934 CAACCTCTCA
76944 TTTTTCT-TTTTT
1 TTTTTCTCTTTTT
*
76956 CTTTTCTCTTTTCT
1 TTTTTCTCTTTT-T
*
76970 CTTTTCTCTTTCTT
1 TTTTTCTCTTT-TT
76984 TTTTTCT-TTTCTT
1 TTTTTCTCTTT-TT
76997 TTTTTCTCTTTTT
1 TTTTTCTCTTTTT
77010 TT
1 TT
77012 GCATGAAATA
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
12 6 0.12
13 21 0.42
14 22 0.44
15 1 0.02
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTCTCTTTTT
Found at i:76972 original size:21 final size:20
Alignment explanation
Indices: 76939--77009 Score: 81
Period size: 21 Copynumber: 3.5 Consensus size: 20
76929 CATCTCAACC
76939 TCTCATTTTTCTTTTTTCTTT
1 TCTC-TTTTTCTTTTTTCTTT
*
76960 TCTC-TTTTCTCTTTTCTCTT
1 TCTCTTTTTCTTTTTTCT-TT
* *
76980 TCTTTTTTTCTTTTCTTTTTT
1 TCTCTTTTTCTTTT-TTCTTT
77001 TCTCTTTTT
1 TCTCTTTTT
77010 TTGCATGAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
19 12 0.29
20 5 0.12
21 22 0.52
22 3 0.07
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.77
Consensus pattern (20 bp):
TCTCTTTTTCTTTTTTCTTT
Found at i:81771 original size:22 final size:22
Alignment explanation
Indices: 81743--81793 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
81733 CACCAGTCAC
* *
81743 CGATGACGGCAACCACCGTCTT
1 CGATGACAGCAACCACCATCTT
* *
81765 CGATGACAGCGACCACTATCTT
1 CGATGACAGCAACCACCATCTT
81787 CGATGAC
1 CGATGAC
81794 CAGAATTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.25, C:0.33, G:0.22, T:0.20
Consensus pattern (22 bp):
CGATGACAGCAACCACCATCTT
Found at i:94013 original size:24 final size:24
Alignment explanation
Indices: 93981--94027 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
93971 CTTTGCTGAT
*
93981 GGCTCTCCAAGGTGGGCGACCAAA
1 GGCTCTCCAAGGTGGCCGACCAAA
94005 GGCTCTCCAAGGTGGCCGACCAA
1 GGCTCTCCAAGGTGGCCGACCAA
94028 GGGATCTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.23, C:0.32, G:0.32, T:0.13
Consensus pattern (24 bp):
GGCTCTCCAAGGTGGCCGACCAAA
Found at i:94152 original size:7 final size:7
Alignment explanation
Indices: 94140--94186 Score: 94
Period size: 7 Copynumber: 6.7 Consensus size: 7
94130 GAATGTGAAT
94140 GATGAGG
1 GATGAGG
94147 GATGAGG
1 GATGAGG
94154 GATGAGG
1 GATGAGG
94161 GATGAGG
1 GATGAGG
94168 GATGAGG
1 GATGAGG
94175 GATGAGG
1 GATGAGG
94182 GATGA
1 GATGA
94187 TTTGAAATGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.30, C:0.00, G:0.55, T:0.15
Consensus pattern (7 bp):
GATGAGG
Found at i:95636 original size:53 final size:54
Alignment explanation
Indices: 95569--95679 Score: 152
Period size: 53 Copynumber: 2.1 Consensus size: 54
95559 AATGTGTAAC
* * * *
95569 ATTTATAAATGTTTTCGTTTAATCGAGTTTTATTACTTAATATTAATCTTACAT
1 ATTTATAAATGTTTTCGCTTAATCGAGTTCTATTACTTAACATTAACCTTACAT
* * *
95623 ATTT-TAAATGTTTTTGCTTAATCGAGTTCTATTACTTAACGTTAACCTTGCAT
1 ATTTATAAATGTTTTCGCTTAATCGAGTTCTATTACTTAACATTAACCTTACAT
95676 ATTT
1 ATTT
95680 CGAAGTTTAA
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 46 0.92
54 4 0.08
ACGTcount: A:0.29, C:0.12, G:0.09, T:0.50
Consensus pattern (54 bp):
ATTTATAAATGTTTTCGCTTAATCGAGTTCTATTACTTAACATTAACCTTACAT
Found at i:96803 original size:6 final size:6
Alignment explanation
Indices: 96792--96821 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
96782 CCAATTATTC
96792 TATTTT TATTTT TATTTT TATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT
96822 GATGGAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TATTTT
Found at i:99560 original size:21 final size:20
Alignment explanation
Indices: 99510--99560 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
99500 AATAGTTAAA
99510 AAAAATCA-AAACTTTGTTT
1 AAAAATCATAAACTTTGTTT
* *
99529 AAAAAT-TTAAACTTTTTCTT
1 AAAAATCATAAACTTTGT-TT
*
99549 TAAAATCATAAA
1 AAAAATCATAAA
99561 AAACTGATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 14 0.56
20 7 0.28
21 4 0.16
ACGTcount: A:0.49, C:0.10, G:0.02, T:0.39
Consensus pattern (20 bp):
AAAAATCATAAACTTTGTTT
Found at i:100132 original size:147 final size:148
Alignment explanation
Indices: 99459--100090 Score: 830
Period size: 145 Copynumber: 4.3 Consensus size: 148
99449 TGATTAAAAT
* * *
99459 AAAATCACTACTTTACTTCAAAATCAAAATTTTTATTTCGAAATAGTTAAAAAAAATCAAAACTT
1 AAAATCACTACTTTACTTAAAAATCAAAACTTTTATTTCGAAATAGTT-AAAAAAATCAAAAATT
* * * ** *
99524 TGTTTAAAAATTTAAACTTTTTCTTTAAAATCA-TAAAAAACTGATTTTTATTTTTTTTAAATCT
65 TGTTTAAAAATTTAAATTTTTTCTTTAAAATAACTAAAAAACAGATTTTTA-TTTTTAAAAATAT
* *
99588 AAATTTTCTTTCTTTTTTAATG
129 AAACTTTC--TCTTTTTTAAAG
* * * * ** *
99610 AAAATTACTACTTTACTTAAAAATCCAAGCTTTTATTTCGAAATAGTAAAAAAAATTTAAATTTT
1 AAAATCACTACTTTACTTAAAAATCAAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAAATTT
* *
99675 GTTTAAAAATTTAAATTTTTTCTTTAAAATCACTAAAAAACAGATTTTTATTTTTAAAAAATCTA
66 GTTTAAAAATTTAAATTTTTTCTTTAAAATAACTAAAAAACAGATTTTTATTTTT-AAAAATATA
*
99740 AAC--T-T-TTTTTTAATG
130 AACTTTCTCTTTTTTAAAG
* * * * *
99755 AAAATTACTACTTTACTTAAAAATCTAAACTTTTATTTTGAAATAGTTAATAAATTCAAAAATTT
1 AAAATCACTACTTTACTTAAAAATCAAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAAATTT
*
99820 GTTTAAAAATTTAAAATTTTTCTTTAAAATAACTAAAAAACAGATTTTTATTTTTAAAAATATAA
66 GTTTAAAAATTTAAATTTTTTCTTTAAAATAACTAAAAAACAGATTTTTATTTTTAAAAATATAA
99885 ACTTTCTCTTTTTTAAAG
131 ACTTTCTCTTTTTTAAAG
* * *
99903 AAAATCACTATTTTATTTAAAAATTC-AAACTTCTATTTCGAAATAGTT-AAAAAATCAAAAATT
1 AAAATCACTACTTTACTTAAAAA-TCAAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAAATT
* * * *
99966 TATTTAAAAATTTAATTTTTTTCTTTAAAATAACTAAAAAATATATTTTTATTTTTAAAAATATA
65 TGTTTAAAAATTTAAATTTTTTCTTTAAAATAACTAAAAAACAGATTTTTATTTTTAAAAATATA
100031 AACTTTCTC-TTTTTAAAG
130 AACTTTCTCTTTTTTAAAG
* *
100049 AAAATCACTATTTTACTTAAAAATCAAAATTTTTATTTCGAA
1 AAAATCACTACTTTACTTAAAAATCAAAACTTTTATTTCGAA
100091 GTTTTTTAAA
Statistics
Matches: 431, Mismatches: 42, Indels: 21
0.87 0.09 0.04
Matches are distributed among these distances:
144 11 0.03
145 121 0.28
146 47 0.11
147 83 0.19
148 49 0.11
149 3 0.01
150 50 0.12
151 67 0.16
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (148 bp):
AAAATCACTACTTTACTTAAAAATCAAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAAATTT
GTTTAAAAATTTAAATTTTTTCTTTAAAATAACTAAAAAACAGATTTTTATTTTTAAAAATATAA
ACTTTCTCTTTTTTAAAG
Found at i:100583 original size:11 final size:11
Alignment explanation
Indices: 100567--100598 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
100557 TGACAAGCCA
100567 AAAAAGAAAAG
1 AAAAAGAAAAG
100578 AAAAAGAAAAG
1 AAAAAGAAAAG
*
100589 AAAAATAAAA
1 AAAAAGAAAA
100599 ACCTCTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.03
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:103094 original size:46 final size:45
Alignment explanation
Indices: 103033--103170 Score: 240
Period size: 46 Copynumber: 3.0 Consensus size: 45
103023 GAAGTGTTGG
103033 GAATTGAATTGGGAGATATATTTGTTTATTGGATTGATTGTTAAAT
1 GAATTGAATT-GGAGATATATTTGTTTATTGGATTGATTGTTAAAT
*
103079 GATTTGAATTCGGAGATATATTTGTTTATTGGATTGATTGTTAAAT
1 GAATTGAATT-GGAGATATATTTGTTTATTGGATTGATTGTTAAAT
103125 GAATTGAATTGTGAGATATATTTGTTTATTGGATTGATTGTTAAAT
1 GAATTGAATTG-GAGATATATTTGTTTATTGGATTGATTGTTAAAT
103171 TTATTCAAGT
Statistics
Matches: 88, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
45 1 0.01
46 87 0.99
ACGTcount: A:0.30, C:0.01, G:0.22, T:0.47
Consensus pattern (45 bp):
GAATTGAATTGGAGATATATTTGTTTATTGGATTGATTGTTAAAT
Found at i:103616 original size:17 final size:18
Alignment explanation
Indices: 103588--103624 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
103578 AAAAAACATC
103588 ATATATTATATATTTAAA
1 ATATATTATATATTTAAA
*
103606 ATATA-TATATATTTTAA
1 ATATATTATATATTTAAA
103623 AT
1 AT
103625 TGTAAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATATATTATATATTTAAA
Found at i:103630 original size:25 final size:24
Alignment explanation
Indices: 103588--103642 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 24
103578 AAAAAACATC
*
103588 ATATATTATATATTTAAAATATAT
1 ATATATTATAAATTTAAAATATAT
*
103612 ATATATTTTAAATTGTAAAATATAT
1 ATATATTATAAATT-TAAAATATAT
*
103637 AAATAT
1 ATATAT
103643 AATTTTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (24 bp):
ATATATTATAAATTTAAAATATAT
Found at i:108848 original size:73 final size:71
Alignment explanation
Indices: 108729--108878 Score: 255
Period size: 73 Copynumber: 2.1 Consensus size: 71
108719 TACGGCATCA
108729 TCACCACCCCAACATGCCCACCATCATCAGAGGTTCTCTCCACCACATATATTACTCTGCAAAAA
1 TCACCACCCCAACATGCCCACCATCATCAGAGGTTCTCTCCACCAC--ATATTACTCTGCAAAAA
108794 ATTCATGG
64 ATTCATGG
* * *
108802 TCACCACCCCAACATGCTCACCATCATCAGAGGTTTTCTCCACCACATATTACTCTTCAAAAAAT
1 TCACCACCCCAACATGCCCACCATCATCAGAGGTTCTCTCCACCACATATTACTCTGCAAAAAAT
108867 TCATGG
66 TCATGG
108873 TCACCA
1 TCACCA
108879 TGAGTTTCAA
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
71 30 0.41
73 44 0.59
ACGTcount: A:0.31, C:0.35, G:0.09, T:0.25
Consensus pattern (71 bp):
TCACCACCCCAACATGCCCACCATCATCAGAGGTTCTCTCCACCACATATTACTCTGCAAAAAAT
TCATGG
Found at i:112020 original size:25 final size:25
Alignment explanation
Indices: 111991--112041 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
111981 CAAAATATCG
111991 TCCACAACATTAGCTTCGTTAGTTC
1 TCCACAACATTAGCTTCGTTAGTTC
*
112016 TCCACAACATTAGCTTCGTTGGTTC
1 TCCACAACATTAGCTTCGTTAGTTC
112041 T
1 T
112042 AACTCTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.27, G:0.14, T:0.37
Consensus pattern (25 bp):
TCCACAACATTAGCTTCGTTAGTTC
Found at i:114221 original size:227 final size:227
Alignment explanation
Indices: 113826--114237 Score: 779
Period size: 227 Copynumber: 1.8 Consensus size: 227
113816 AAACCTGTCC
*
113826 CATATACCACACTTTTAACAATGTGAGATATGAGGTTTTAAGTACCATTTTTCCTCAACAATCAT
1 CATATACCACACTTTTAACAATGTGAGATATGAGGTTTTAAGCACCATTTTTCCTCAACAATCAT
*
113891 TTTCATGTAGCTTACTTTGAGCTTCAATTTCTCATTCATTACTCAACCATTTCGAGCATATTATA
66 TTTCATGTAGCTTACTTTAAGCTTCAATTTCTCATTCATTACTCAACCATTTCGAGCATATTATA
*
113956 TATTGTTTTAAAGGTCTCATGGAGTAAAATATAATAATAATAATAATATTTATTATTTTGAGCAT
131 TATCGTTTTAAAGGTCTCATGGAGTAAAATATAATAATAATAATAATATTTATTATTTTGAGCAT
114021 ATACCACACTTTTAAAGGTATATTGTTTTGAG
196 ATACCACACTTTTAAAGGTATATTGTTTTGAG
114053 CATATACCACACTTTTAACAATGTGAGATATGAGGTTTTAAGCACCATTTTTCCTCAACAATCAT
1 CATATACCACACTTTTAACAATGTGAGATATGAGGTTTTAAGCACCATTTTTCCTCAACAATCAT
*
114118 TTTCATGTAGCTTACTTTAAGCTTCAATTTCTCATTCATTACTCAACCATTTTGAGCATATTATA
66 TTTCATGTAGCTTACTTTAAGCTTCAATTTCTCATTCATTACTCAACCATTTCGAGCATATTATA
*
114183 TATCGTTTTAAAGGTCTCATGGAGTAGAATATAATAATAATAATAATATTTATTA
131 TATCGTTTTAAAGGTCTCATGGAGTAAAATATAATAATAATAATAATATTTATTA
114238 CTTAAAAACT
Statistics
Matches: 180, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
227 180 1.00
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (227 bp):
CATATACCACACTTTTAACAATGTGAGATATGAGGTTTTAAGCACCATTTTTCCTCAACAATCAT
TTTCATGTAGCTTACTTTAAGCTTCAATTTCTCATTCATTACTCAACCATTTCGAGCATATTATA
TATCGTTTTAAAGGTCTCATGGAGTAAAATATAATAATAATAATAATATTTATTATTTTGAGCAT
ATACCACACTTTTAAAGGTATATTGTTTTGAG
Found at i:115386 original size:8 final size:8
Alignment explanation
Indices: 115373--115409 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
115363 TTTAAATTCT
*
115373 AAATTTTG
1 AAATTTTA
115381 AAATTTTA
1 AAATTTTA
115389 AAATTTTA
1 AAATTTTA
115397 AAATTTTA
1 AAATTTTA
115405 AAATT
1 AAATT
115410 ATATATCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (8 bp):
AAATTTTA
Found at i:115525 original size:21 final size:23
Alignment explanation
Indices: 115483--115526 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
115473 AATATATAAC
* *
115483 TTTTTAAAATATTTCAATAATTT
1 TTTTTAAAATATATCAAAAATTT
115506 TTTTTAAAAT-TAT-AAAAATTT
1 TTTTTAAAATATATCAAAAATTT
115527 ATATTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 2 0.11
23 10 0.53
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (23 bp):
TTTTTAAAATATATCAAAAATTT
Found at i:115546 original size:18 final size:18
Alignment explanation
Indices: 115519--115558 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
115509 TTAAAATTAT
* *
115519 AAAAATTTATATTTTTAA
1 AAAAAATTATATTTATAA
115537 AAAAAATTATATTTATAA
1 AAAAAATTATATTTATAA
115555 AAAA
1 AAAA
115559 TTTAAAATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAAAATTATATTTATAA
Found at i:116826 original size:69 final size:69
Alignment explanation
Indices: 116751--116892 Score: 275
Period size: 69 Copynumber: 2.1 Consensus size: 69
116741 AAAAAATGTT
116751 ATTTACTTCTAAAATAGCAATAAAGTGTCTCCAAAGCTCAAACTATACTTTCAATCAGTATTAAA
1 ATTTACTTCTAAAATAGCAATAAAGTGTCTCCAAAGCTCAAACTATACTTTCAATCAGTATTAAA
116816 TCAG
66 TCAG
*
116820 ATTTACTTCTAAAATAGCAATAAAGTGTCTCCAAAGCTGAAACTATACTTTCAATCAGTATTAAA
1 ATTTACTTCTAAAATAGCAATAAAGTGTCTCCAAAGCTCAAACTATACTTTCAATCAGTATTAAA
116885 TCAG
66 TCAG
116889 ATTT
1 ATTT
116893 TAATATAATC
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 72 1.00
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (69 bp):
ATTTACTTCTAAAATAGCAATAAAGTGTCTCCAAAGCTCAAACTATACTTTCAATCAGTATTAAA
TCAG
Found at i:117074 original size:20 final size:20
Alignment explanation
Indices: 117046--117098 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 20
117036 TTTTATAATA
117046 TTATGAATTTTTAAATGAATTT
1 TTAT-AATTTTTAAA-GAATTT
*
117068 TT-TAA-TTTTAAAGATTTT
1 TTATAATTTTTAAAGAATTT
117086 TTCATAATTTTTA
1 TT-ATAATTTTTA
117099 TTTTTTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
18 7 0.26
19 7 0.26
20 5 0.19
21 6 0.22
22 2 0.07
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (20 bp):
TTATAATTTTTAAAGAATTT
Found at i:118966 original size:25 final size:25
Alignment explanation
Indices: 118932--119020 Score: 106
Period size: 25 Copynumber: 3.6 Consensus size: 25
118922 GTCAGAAAAG
* *
118932 GAAAGACTTTGTGGTGAAATGTAAA
1 GAAAGCCTTTGTGGCGAAATGTAAA
* * *
118957 GAGAGCCTTTGTGACGAAATATAAA
1 GAAAGCCTTTGTGGCGAAATGTAAA
* * *
118982 GAAAGCTTTTGTGGCAAAATGTACA
1 GAAAGCCTTTGTGGCGAAATGTAAA
119007 GAAAGCCTTTGTGG
1 GAAAGCCTTTGTGG
119021 AGCTTACTAA
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.36, C:0.10, G:0.27, T:0.27
Consensus pattern (25 bp):
GAAAGCCTTTGTGGCGAAATGTAAA
Found at i:120708 original size:21 final size:21
Alignment explanation
Indices: 120684--120736 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
120674 TTATGCTAGC
120684 TCTACCGATACAAGT-ATG-A
1 TCTACCGATACAAGTCATGCA
*
120703 TTTCTATCGATACAAGTCATGCA
1 --TCTACCGATACAAGTCATGCA
120726 TCTACCGATAC
1 TCTACCGATAC
120737 CGAAAACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 24 0.86
22 3 0.11
23 1 0.04
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (21 bp):
TCTACCGATACAAGTCATGCA
Found at i:123743 original size:21 final size:21
Alignment explanation
Indices: 123696--123737 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
123686 TTATTATATC
123696 AAATATTATAATATTAGTGTA
1 AAATATTATAATATTAGTGTA
123717 AAATATTATAATATTAGTGTA
1 AAATATTATAATATTAGTGTA
123738 GTATATAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.43
Consensus pattern (21 bp):
AAATATTATAATATTAGTGTA
Found at i:123746 original size:18 final size:20
Alignment explanation
Indices: 123696--123765 Score: 78
Period size: 21 Copynumber: 3.7 Consensus size: 20
123686 TTATTATATC
123696 AAATATTATAATATTAGTGT
1 AAATATTATAATATTAGTGT
123716 AAAATATTATAATATTAGTGT
1 -AAATATTATAATATTAGTGT
*
123737 -AGTA-TATAATA-TA--GT
1 AAATATTATAATATTAGTGT
*
123752 AATTATTATAATAT
1 AAATATTATAATAT
123766 ATTATTCTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
15 2 0.05
16 3 0.07
17 9 0.20
18 7 0.16
19 3 0.07
21 20 0.45
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (20 bp):
AAATATTATAATATTAGTGT
Found at i:126389 original size:30 final size:30
Alignment explanation
Indices: 126353--126508 Score: 199
Period size: 30 Copynumber: 5.3 Consensus size: 30
126343 ACCGAAAAAG
*
126353 GAGCCTTTATGGTTGGAATATGTTATATGT
1 GAGCCTTTATGGTTGGAATCTGTTATATGT
* *
126383 GAGCCTTTTTGGTTGGAATCTATTATATGT
1 GAGCCTTTATGGTTGGAATCTGTTATATGT
*
126413 GAGCCTTTATGGTTGGAATCTGTTATATGA
1 GAGCCTTTATGGTTGGAATCTGTTATATGT
* * *
126443 GAGCCTTTGTGG-CGGAATTTGTTATATGT
1 GAGCCTTTATGGTTGGAATCTGTTATATGT
* * * *
126472 GAACCTTTAAGGCT-GAATCTGTTCTATGT
1 GAGCCTTTATGGTTGGAATCTGTTATATGT
126501 GAGCCTTT
1 GAGCCTTT
126509 GTGGCTAAAC
Statistics
Matches: 108, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
29 43 0.40
30 65 0.60
ACGTcount: A:0.21, C:0.12, G:0.26, T:0.42
Consensus pattern (30 bp):
GAGCCTTTATGGTTGGAATCTGTTATATGT
Found at i:126447 original size:60 final size:59
Alignment explanation
Indices: 126353--126539 Score: 220
Period size: 60 Copynumber: 3.2 Consensus size: 59
126343 ACCGAAAAAG
* * *
126353 GAGCCTTTATGGTTGGAATATGTTATATGTGAGCCTTTTTGGTTGGAATCTATTATATGT
1 GAGCCTTTATGGTTGGAATCTGTTATATGTGAGCCTTTGTGG-CGGAATCTATTATATGT
* * *
126413 GAGCCTTTATGGTTGGAATCTGTTATATGAGAGCCTTTGTGGCGGAATTTGTTATATGT
1 GAGCCTTTATGGTTGGAATCTGTTATATGTGAGCCTTTGTGGCGGAATCTATTATATGT
* * * * * *
126472 GAACCTTTAAGGCT-GAATCTGTTCTATGTGAGCCTTTGTGGC-TAAACTA-T-TATGT
1 GAGCCTTTATGGTTGGAATCTGTTATATGTGAGCCTTTGTGGCGGAATCTATTATATGT
126527 GAAGCCTTTATGG
1 G-AGCCTTTATGG
126540 CTATCTTCGT
Statistics
Matches: 109, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
55 6 0.06
56 10 0.09
57 3 0.03
58 26 0.24
59 25 0.23
60 39 0.36
ACGTcount: A:0.22, C:0.12, G:0.26, T:0.41
Consensus pattern (59 bp):
GAGCCTTTATGGTTGGAATCTGTTATATGTGAGCCTTTGTGGCGGAATCTATTATATGT
Found at i:126658 original size:28 final size:28
Alignment explanation
Indices: 126613--126679 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
126603 AAAGGATGCT
* *
126613 TTTGTGACTATCTATGCTTATGGACGCC
1 TTTGTGACTATATATGCTTATGAACGCC
* *
126641 TTTGTGGCTATATTTGCTTATGAACGCC
1 TTTGTGACTATATATGCTTATGAACGCC
*
126669 TTTATGACTAT
1 TTTGTGACTAT
126680 CTATTGTTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.43
Consensus pattern (28 bp):
TTTGTGACTATATATGCTTATGAACGCC
Found at i:127915 original size:15 final size:16
Alignment explanation
Indices: 127889--127918 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
127879 TCAATTTCGG
127889 TAATAGTTATATAATA
1 TAATAGTTATATAATA
127905 TAATA-TTATATAAT
1 TAATAGTTATATAAT
127919 CATTAAAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
TAATAGTTATATAATA
Found at i:131268 original size:3 final size:3
Alignment explanation
Indices: 131260--131288 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
131250 CCCATTTCCT
131260 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
131289 GGTGATCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:142697 original size:46 final size:46
Alignment explanation
Indices: 142622--142709 Score: 140
Period size: 46 Copynumber: 1.9 Consensus size: 46
142612 ATGGTACAGA
** * *
142622 AACTGACACCTTTCCTTTAAGTTATAGGCAAATCTAAATCATCAGG
1 AACTGACACCTTTCCTTTAAACTAAAGGCAAATATAAATCATCAGG
142668 AACTGACACCTTTCCTTTAAACTAAAGGCAAATATAAATCAT
1 AACTGACACCTTTCCTTTAAACTAAAGGCAAATATAAATCAT
142710 TAAGAGAACT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (46 bp):
AACTGACACCTTTCCTTTAAACTAAAGGCAAATATAAATCATCAGG
Found at i:145126 original size:46 final size:46
Alignment explanation
Indices: 145070--145171 Score: 177
Period size: 46 Copynumber: 2.2 Consensus size: 46
145060 ATGATAAGAG
* *
145070 AATAAGAATGGTACCAAAGTGTCCAAATTTAAAAATTAACAAACAA
1 AATAAAAATGGTACCAAAATGTCCAAATTTAAAAATTAACAAACAA
145116 AATAAAAATGGTACCAAAATGTCCAAATTTAAAAATTAACAAACAA
1 AATAAAAATGGTACCAAAATGTCCAAATTTAAAAATTAACAAACAA
145162 AACTAAAAAT
1 AA-TAAAAAT
145172 AAGCAATACA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
46 46 0.87
47 7 0.13
ACGTcount: A:0.58, C:0.13, G:0.08, T:0.22
Consensus pattern (46 bp):
AATAAAAATGGTACCAAAATGTCCAAATTTAAAAATTAACAAACAA
Found at i:148739 original size:9 final size:9
Alignment explanation
Indices: 148727--148759 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
148717 TTAAAAAAGG
148727 TAAAAATAT
1 TAAAAATAT
148736 TAAAAAT-T
1 TAAAAATAT
*
148744 TAAAATTAT
1 TAAAAATAT
148753 TAAAAAT
1 TAAAAAT
148760 TTGTCAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (9 bp):
TAAAAATAT
Found at i:148747 original size:17 final size:17
Alignment explanation
Indices: 148727--148761 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
148717 TTAAAAAAGG
148727 TAAAAATATTAAAAATT
1 TAAAAATATTAAAAATT
*
148744 TAAAATTATTAAAAATT
1 TAAAAATATTAAAAATT
148761 T
1 T
148762 GTCAAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAAAATATTAAAAATT
Found at i:149274 original size:19 final size:19
Alignment explanation
Indices: 149237--149316 Score: 67
Period size: 19 Copynumber: 4.3 Consensus size: 19
149227 TCATCGACTA
* * *
149237 TTTTCATCTTTTTACAATT
1 TTTTAATCTTTTAATAATT
149256 TTTTAATCTTTTAATAATT
1 TTTTAATCTTTTAATAATT
* *
149275 TTATAA-CTTTAAAT-ATT
1 TTTTAATCTTTTAATAATT
*
149292 TTTAAAATTCTTTT-ATAATT
1 TTT-TAA-TCTTTTAATAATT
149312 TTTTA
1 TTTTA
149317 TTATTTTTAT
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
17 5 0.10
18 9 0.19
19 24 0.50
20 10 0.21
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTAATCTTTTAATAATT
Found at i:149325 original size:48 final size:49
Alignment explanation
Indices: 149254--149349 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 49
149244 CTTTTTACAA
* *
149254 TTTTTTAATCTTTTAATAATTTTATAACTTT-AAATATTTTTAAAATTC
1 TTTTATAATCTTTTAATAATTTTATAAATTTCAAATATTTTTAAAATTC
* * * * *
149302 TTTTATAATTTTTTATTATTTTTATAAATTTCAATTTTTTTTAAAATT
1 TTTTATAATCTTTTAATAATTTTATAAATTTCAAATATTTTTAAAATT
149350 ATTATAAACT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
48 26 0.65
49 14 0.35
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (49 bp):
TTTTATAATCTTTTAATAATTTTATAAATTTCAAATATTTTTAAAATTC
Found at i:158764 original size:14 final size:14
Alignment explanation
Indices: 158747--158773 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
158737 TGAAATAGTG
158747 ATTATTAAATATTA
1 ATTATTAAATATTA
158761 ATTATTAAATATT
1 ATTATTAAATATT
158774 TACGAAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTATTAAATATTA
Found at i:159910 original size:40 final size:41
Alignment explanation
Indices: 159837--159952 Score: 110
Period size: 40 Copynumber: 2.8 Consensus size: 41
159827 GATTTGGGCA
* * * *
159837 TTGAGCTTAGCAAGATTTATGTCTATGTATTGTATTGAGCC
1 TTGAGCCTAGCAAGATTTATGCCAATGTATTGTATCGAGCC
* *
159878 TTG-GCCTAGC-AGATGTTATGCCAATGTGTTGTATCGGGCC
1 TTGAGCCTAGCAAGAT-TTATGCCAATGTATTGTATCGAGCC
* * * *
159918 TTGAGCCTAACAAGCTATATGCCAGTGTACTTGTA
1 TTGAGCCTAGCAAGATTTATGCCAATGTA-TTGTA
159953 ACCCAAAAAC
Statistics
Matches: 60, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
39 4 0.07
40 29 0.48
41 19 0.32
42 8 0.13
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (41 bp):
TTGAGCCTAGCAAGATTTATGCCAATGTATTGTATCGAGCC
Found at i:160079 original size:12 final size:12
Alignment explanation
Indices: 160062--160086 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
160052 CTTAAAAACA
160062 CAATTTTTAAAT
1 CAATTTTTAAAT
160074 CAATTTTTAAAT
1 CAATTTTTAAAT
160086 C
1 C
160087 TCGATCTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (12 bp):
CAATTTTTAAAT
Found at i:161992 original size:18 final size:19
Alignment explanation
Indices: 161959--161999 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
161949 TCGACTAAGT
* *
161959 AGGAAGGGGAAAGAAATGA
1 AGGAAGGAGAAAGAAAAGA
161978 AGGAAGGAG-AAGAAAAGA
1 AGGAAGGAGAAAGAAAAGA
161996 AGGA
1 AGGA
162000 GTTCCACGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.56, C:0.00, G:0.41, T:0.02
Consensus pattern (19 bp):
AGGAAGGAGAAAGAAAAGA
Found at i:164309 original size:4 final size:4
Alignment explanation
Indices: 164300--164349 Score: 64
Period size: 4 Copynumber: 11.8 Consensus size: 4
164290 TGGTTTTCAT
*
164300 TTTA TTTA TTTA TTTA TTTA TCTA TTTA TTTA TTTTA TTTTA TTTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA -TTTA -TTTA TTT
164350 TACTAACTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
4 29 0.67
5 14 0.33
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:164338 original size:5 final size:5
Alignment explanation
Indices: 164293--164351 Score: 54
Period size: 5 Copynumber: 12.0 Consensus size: 5
164283 TCCAATTTGG
*
164293 TTTTCA TTTTA -TTTA -TTTA -TTTA TTTATC TATTTA -TTTA TTTTA
1 TTTT-A TTTTA TTTTA TTTTA TTTTA TTT-TA T-TTTA TTTTA TTTTA
164337 TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA
164352 CTAACTAATT
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
4 16 0.34
5 22 0.47
6 7 0.15
7 2 0.04
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:165729 original size:28 final size:28
Alignment explanation
Indices: 165694--165823 Score: 116
Period size: 28 Copynumber: 4.6 Consensus size: 28
165684 ATGGTGCTTC
* * * *
165694 TTCGAGCCAGAATGCAGAGTAATGCCCT
1 TTCGAGCCAGAATACAGAATAACGCTCT
* * *
165722 TTTGAGCCAAAATTCAGAATAACGCTCT
1 TTCGAGCCAGAATACAGAATAACGCTCT
* * * ** *
165750 TTCGAACTAGAATATAGAATAGTGATCT
1 TTCGAGCCAGAATACAGAATAACGCTCT
* *
165778 TTTGAGCCAGAATACATAATAACGCTCT
1 TTCGAGCCAGAATACAGAATAACGCTCT
*
165806 TTCGAGCCAGAATTCAGA
1 TTCGAGCCAGAATACAGA
165824 GTATTTCTCA
Statistics
Matches: 76, Mismatches: 26, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
28 76 1.00
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (28 bp):
TTCGAGCCAGAATACAGAATAACGCTCT
Found at i:179935 original size:12 final size:12
Alignment explanation
Indices: 179913--179967 Score: 67
Period size: 12 Copynumber: 4.6 Consensus size: 12
179903 GAGAGTTCTC
*
179913 AAGAGGAAAAAG
1 AAGAAGAAAAAG
*
179925 AA-AATGAAAAAC
1 AAGAA-GAAAAAG
179937 AAGAAGAAAAAG
1 AAGAAGAAAAAG
*
179949 AAGAAGAAAAAC
1 AAGAAGAAAAAG
179961 AAGAAGA
1 AAGAAGA
179968 TACCCATACA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
11 1 0.03
12 34 0.92
13 2 0.05
ACGTcount: A:0.73, C:0.04, G:0.22, T:0.02
Consensus pattern (12 bp):
AAGAAGAAAAAG
Found at i:179939 original size:24 final size:24
Alignment explanation
Indices: 179912--179967 Score: 87
Period size: 24 Copynumber: 2.3 Consensus size: 24
179902 GGAGAGTTCT
*
179912 CAAGAGGAAAAAGAA-AATGAAAAA
1 CAAGAAGAAAAAGAAGAA-GAAAAA
179936 CAAGAAGAAAAAGAAGAAGAAAAA
1 CAAGAAGAAAAAGAAGAAGAAAAA
179960 CAAGAAGA
1 CAAGAAGA
179968 TACCCATACA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 28 0.93
25 2 0.07
ACGTcount: A:0.71, C:0.05, G:0.21, T:0.02
Consensus pattern (24 bp):
CAAGAAGAAAAAGAAGAAGAAAAA
Found at i:181773 original size:19 final size:18
Alignment explanation
Indices: 181746--181781 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
181736 AAAGGATGAA
*
181746 AGGATGAGAGAATTGAGAG
1 AGGAAGAGAGAA-TGAGAG
181765 AGGAAGAGAGAATGAGA
1 AGGAAGAGAGAATGAGA
181782 ATGTGAAGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.47, C:0.00, G:0.42, T:0.11
Consensus pattern (18 bp):
AGGAAGAGAGAATGAGAG
Found at i:195871 original size:35 final size:35
Alignment explanation
Indices: 195825--195895 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
195815 TATAGCAAAG
195825 ATAAATTCTATTCGCGTATTACTATCTCTTGCAGT
1 ATAAATTCTATTCGCGTATTACTATCTCTTGCAGT
195860 ATAAATTCTATTCGCGTATTACTATCTCTTGCAGT
1 ATAAATTCTATTCGCGTATTACTATCTCTTGCAGT
195895 A
1 A
195896 AATTCAAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.42
Consensus pattern (35 bp):
ATAAATTCTATTCGCGTATTACTATCTCTTGCAGT
Found at i:202413 original size:5 final size:5
Alignment explanation
Indices: 202403--202430 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
202393 GCAACTTGAG
202403 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
202431 ATGTTGTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:203063 original size:5 final size:5
Alignment explanation
Indices: 203049--203213 Score: 54
Period size: 5 Copynumber: 30.2 Consensus size: 5
203039 TCTTTTGAAA
203049 TATTT ATATTT TA-TT TAGTTT TATGTT T-TATT TA-TT TATTTT TATTTT
1 TATTT -TATTT TATTT TA-TTT TAT-TT TAT-TT TATTT TA-TTT TA-TTT
*
203097 TATTT GTACTTT TATTTT TGTTGT TATTT GT-TTT TATTT TATTT T-TTT
1 TATTT -TA-TTT TA-TTT TATT-T TATTT -TATTT TATTT TATTT TATTT
* * * *
203145 GGACTTAT ATGTTT TATTT TATTT TATTAT TCACTT TATTTT TATTA TATTAT
1 -TA-TT-T -TATTT TATTT TATTT TATT-T T-ATTT TA-TTT TATTT TATT-T
*
203198 T-TGTT TATTC TATTT T
1 TAT-TT TATTT TATTT T
203214 GTATATTTTT
Statistics
Matches: 123, Mismatches: 15, Indels: 43
0.68 0.08 0.24
Matches are distributed among these distances:
4 12 0.10
5 54 0.44
6 47 0.38
7 9 0.07
8 1 0.01
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.72
Consensus pattern (5 bp):
TATTT
Found at i:203072 original size:10 final size:10
Alignment explanation
Indices: 203049--203142 Score: 59
Period size: 11 Copynumber: 9.1 Consensus size: 10
203039 TCTTTTGAAA
203049 TATTTATATTT
1 TATTTAT-TTT
*
203060 TATTTAGTTT
1 TATTTATTTT
203070 TATGTT-TTATT
1 TAT-TTATT-TT
203081 TATTTATTTT
1 TATTTATTTT
*
203091 TATTT-TTAT
1 TATTTATTTT
* *
203100 T-TGTACTTT
1 TATTTATTTT
*
203109 TATTTTTGTTGT
1 TATTTAT-TT-T
*
203121 TATTTGTTTT
1 TATTTATTTT
203131 TATTTTATTTT
1 TA-TTTATTTT
203142 T
1 T
203143 TTGGACTTAT
Statistics
Matches: 64, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
8 2 0.03
9 7 0.11
10 21 0.33
11 27 0.42
12 7 0.11
ACGTcount: A:0.17, C:0.01, G:0.06, T:0.76
Consensus pattern (10 bp):
TATTTATTTT
Found at i:203077 original size:17 final size:14
Alignment explanation
Indices: 203049--203095 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 14
203039 TCTTTTGAAA
203049 TATTTATATTTTATT
1 TATTTAT-TTTTATT
203064 TAGTTTTATGTTTTATT
1 TA--TTTAT-TTTTATT
203081 TATTTATTTTTATT
1 TATTTATTTTTATT
203095 T
1 T
203096 TTATTTGTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 8 0.28
15 7 0.24
17 14 0.48
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.74
Consensus pattern (14 bp):
TATTTATTTTTATT
Found at i:203083 original size:21 final size:20
Alignment explanation
Indices: 203058--203101 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 20
203048 ATATTTATAT
203058 TTTATTTAGTTTTATGTTTTA
1 TTTATTTAGTTTTAT-TTTTA
*
203079 TTTATTTATTTTTATTTTTA
1 TTTATTTAGTTTTATTTTTA
203099 TTT
1 TTT
203102 GTACTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (20 bp):
TTTATTTAGTTTTATTTTTA
Found at i:203094 original size:6 final size:6
Alignment explanation
Indices: 203062--203142 Score: 60
Period size: 6 Copynumber: 13.5 Consensus size: 6
203052 TTATATTTTA
* * *
203062 TTTAGT TTTATGT TTTATTT ATTTATT TTTATT TTTATT TGTACT TTTATT
1 TTTATT TTTAT-T TTTA-TT -TTTATT TTTATT TTTATT TTTATT TTTATT
* * *
203113 TTTGTT GTTA-- TTTGTT TTTA-T TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTT
203143 TTGGACTTAT
Statistics
Matches: 58, Mismatches: 11, Indels: 12
0.72 0.14 0.15
Matches are distributed among these distances:
4 2 0.03
5 5 0.09
6 38 0.66
7 8 0.14
8 5 0.09
ACGTcount: A:0.15, C:0.01, G:0.07, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:203115 original size:24 final size:23
Alignment explanation
Indices: 203083--203168 Score: 90
Period size: 24 Copynumber: 3.8 Consensus size: 23
203073 GTTTTATTTA
203083 TTTATTTTTATTTTTATTTGTACT
1 TTTATTTTTA-TTTTATTTGTACT
*
203107 TTTATTTTTGTTGTTATTTGT--T
1 TTTATTTTTATT-TTATTTGTACT
*
203129 TTTA-TTTTATTTT-TTTGGACT
1 TTTATTTTTATTTTATTTGTACT
*
203150 TATATGTTTTATTTTATTT
1 TTTAT-TTTTATTTTATTT
203169 TATTATTCAC
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
19 4 0.08
20 2 0.04
21 10 0.19
22 5 0.10
23 11 0.21
24 20 0.38
ACGTcount: A:0.15, C:0.02, G:0.08, T:0.74
Consensus pattern (23 bp):
TTTATTTTTATTTTATTTGTACT
Found at i:203187 original size:28 final size:27
Alignment explanation
Indices: 203127--203195 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 27
203117 TTGTTATTTG
*
203127 TTTTTATTTTATTTTTTTGGACTTATA
1 TTTTTATTTTATTTTTTTGCACTTATA
*
203154 TGTTTTATTTTATTTTATTATTCACTT-TA
1 T-TTTTATTTTATTTT-TT-TGCACTTATA
*
203183 TTTTTATTATATT
1 TTTTTATTTTATT
203196 ATTTGTTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 1 0.03
28 25 0.69
29 5 0.14
30 5 0.14
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.71
Consensus pattern (27 bp):
TTTTTATTTTATTTTTTTGCACTTATA
Found at i:204943 original size:29 final size:29
Alignment explanation
Indices: 204871--204943 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
204861 TATGGTCAGG
*
204871 CCACACGACCATGTAACCCACACAGGCTA
1 CCACACGACCATGTGACCCACACAGGCTA
** * *
204900 CCACACGATTATGTGACCCATACGGGCTA
1 CCACACGACCATGTGACCCACACAGGCTA
*
204929 CCACACAACCATGTG
1 CCACACGACCATGTG
204944 GTAGGTTGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.32, C:0.37, G:0.16, T:0.15
Consensus pattern (29 bp):
CCACACGACCATGTGACCCACACAGGCTA
Found at i:210039 original size:12 final size:13
Alignment explanation
Indices: 210022--210050 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
210012 ATGGTATATA
210022 TTTTTTG-GTGTT
1 TTTTTTGAGTGTT
210034 TTTTTTGAGTGTT
1 TTTTTTGAGTGTT
210047 TTTT
1 TTTT
210051 GTTCTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.03, C:0.00, G:0.21, T:0.76
Consensus pattern (13 bp):
TTTTTTGAGTGTT
Found at i:221822 original size:186 final size:186
Alignment explanation
Indices: 221508--221882 Score: 642
Period size: 186 Copynumber: 2.0 Consensus size: 186
221498 ATGATGAAGA
*
221508 GTTTCTTGGTTCTAAAGTACCATATCTAAGTGACATAGGGGCATTGATGTATCTTGCAAACAACA
1 GTTTCTTGGTTCTAAAGTACCATATCTAAGTGACATAGAGGCATTGATGTATCTTGCAAACAACA
* *
221573 CAAGACCTGATATAGCTTTCGTTGTAAACTTGTTAGCAAGATTTAGTTCTTCTTTAACATGTAGA
66 CAAGACCTGATATAGCTTTCGCTGTAAACTTGTTAGCAAGATTTAGTTCTTCTTCAACATGTAGA
* * *
221638 CACTGTAATGAAATTAAACAAATATTTAAATATTTCAGAAGGACCATTTATATGGG
131 CACTATAATGAAATTAAACAAATATTTAAATATCTCAGAAGGACCATTGATATGGG
*
221694 GTTTCTTGGTTCTGAAGTACCATATCTAAGTGACATAGAGGCATTGATGTATCTTGCAAACAACA
1 GTTTCTTGGTTCTAAAGTACCATATCTAAGTGACATAGAGGCATTGATGTATCTTGCAAACAACA
* *
221759 CAAGACCTGATATAGCTTTTGCTGTAAATTTGTTAGCAAGATTTAGTTCTTCTTCAACATGTAGA
66 CAAGACCTGATATAGCTTTCGCTGTAAACTTGTTAGCAAGATTTAGTTCTTCTTCAACATGTAGA
* * *
221824 CATTATAATGGAATTAAACAAATATTTAGATATCTCAGAAGGACCATTGATATGGG
131 CACTATAATGAAATTAAACAAATATTTAAATATCTCAGAAGGACCATTGATATGGG
221880 GTT
1 GTT
221883 ATTTTATTCA
Statistics
Matches: 177, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
186 177 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.34
Consensus pattern (186 bp):
GTTTCTTGGTTCTAAAGTACCATATCTAAGTGACATAGAGGCATTGATGTATCTTGCAAACAACA
CAAGACCTGATATAGCTTTCGCTGTAAACTTGTTAGCAAGATTTAGTTCTTCTTCAACATGTAGA
CACTATAATGAAATTAAACAAATATTTAAATATCTCAGAAGGACCATTGATATGGG
Found at i:223198 original size:24 final size:25
Alignment explanation
Indices: 223171--223222 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 25
223161 TATTATTTTA
*
223171 ATTTAATATTTA-ATAATTTTATAT
1 ATTTAATATTTATAAAATTTTATAT
**
223195 ATTTTTTATTTATTAAAATTTTATAT
1 ATTTAATATTTA-TAAAATTTTATAT
223221 AT
1 AT
223223 AGTCATCATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 10 0.43
26 13 0.57
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (25 bp):
ATTTAATATTTATAAAATTTTATAT
Found at i:226290 original size:106 final size:106
Alignment explanation
Indices: 226162--226367 Score: 313
Period size: 106 Copynumber: 1.9 Consensus size: 106
226152 TATACTATGC
** *
226162 AATATATACATCGAGAGATTAATGATTTGTAAAGATGACAAAAACTTTTGTTGTCTAAACATACC
1 AATATATACATCGAGAGATTAATGATAGGTAAAGATGACAAAAACATTTGTTGTCTAAACATACC
* *
226227 CTTTGAGGTTTCTCTTAAAAAGTGAGAGTGAACATCCATGT
66 ATTTGAAGTTTCTCTTAAAAAGTGAGAGTGAACATCCATGT
* * *
226268 AATATATACATCTAGAGATTAATGATAGGTAAAGATTACAGAAACATTTGTTGTCTAAACATACC
1 AATATATACATCGAGAGATTAATGATAGGTAAAGATGACAAAAACATTTGTTGTCTAAACATACC
** *
226333 ATTTGAAGTTTCTCTTGTAAAGTTAGAGTGAACAT
66 ATTTGAAGTTTCTCTTAAAAAGTGAGAGTGAACAT
226368 TGATGGAACA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
106 89 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (106 bp):
AATATATACATCGAGAGATTAATGATAGGTAAAGATGACAAAAACATTTGTTGTCTAAACATACC
ATTTGAAGTTTCTCTTAAAAAGTGAGAGTGAACATCCATGT
Found at i:229139 original size:19 final size:20
Alignment explanation
Indices: 229115--229152 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
229105 TTATTCAATA
229115 AATAAAATT-GTTATTTTTT
1 AATAAAATTAGTTATTTTTT
*
229134 AATAAAATTATTTATTTTT
1 AATAAAATTAGTTATTTTT
229153 GATTTTGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
AATAAAATTAGTTATTTTTT
Found at i:230925 original size:27 final size:27
Alignment explanation
Indices: 230860--230928 Score: 86
Period size: 26 Copynumber: 2.6 Consensus size: 27
230850 TCATATCATT
* * *
230860 CGGGGTGGTCAGGCGATAGATATCATA
1 CGGGTTGGTCAGGCCATAGATATAATA
* *
230887 -GAGTTGGTCAGGCCATGGATATAATA
1 CGGGTTGGTCAGGCCATAGATATAATA
230913 CGGGTTGGTCAGGCCA
1 CGGGTTGGTCAGGCCA
230929 CGAGTATCAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 21 0.60
27 14 0.40
ACGTcount: A:0.25, C:0.16, G:0.36, T:0.23
Consensus pattern (27 bp):
CGGGTTGGTCAGGCCATAGATATAATA
Found at i:231319 original size:26 final size:28
Alignment explanation
Indices: 231273--231329 Score: 100
Period size: 26 Copynumber: 2.1 Consensus size: 28
231263 GAATTTGGAA
231273 TTAATTATATTTATGTTTATGTTTGTAT
1 TTAATTATATTTATGTTTATGTTTGTAT
231301 TTAATTA-A-TTATGTTTATGTTTGTAT
1 TTAATTATATTTATGTTTATGTTTGTAT
231327 TTA
1 TTA
231330 TGGTTTGGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 21 0.72
27 1 0.03
28 7 0.24
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (28 bp):
TTAATTATATTTATGTTTATGTTTGTAT
Found at i:231349 original size:7 final size:7
Alignment explanation
Indices: 231333--231376 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
231323 GTATTTATGG
231333 TTTGGGT
1 TTTGGGT
*
231340 TTTGGTT
1 TTTGGGT
*
231347 TTTAGGT
1 TTTGGGT
231354 TTTGGGT
1 TTTGGGT
231361 TTT-GGT
1 TTTGGGT
231367 TTTAGGGT
1 TTT-GGGT
231375 TT
1 TT
231377 AGGGCATGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
6 6 0.19
7 20 0.65
8 5 0.16
ACGTcount: A:0.05, C:0.00, G:0.34, T:0.61
Consensus pattern (7 bp):
TTTGGGT
Found at i:231482 original size:8 final size:8
Alignment explanation
Indices: 231448--231486 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
231438 TTAATGAAGG
231448 TAAAACCT
1 TAAAACCT
231456 T-AAACCT
1 TAAAACCT
* *
231463 TAAACCCC
1 TAAAACCT
231471 TAAAACCT
1 TAAAACCT
231479 TAAAACCT
1 TAAAACCT
231487 AAATCCTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (8 bp):
TAAAACCT
Found at i:231489 original size:23 final size:22
Alignment explanation
Indices: 231448--231497 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 22
231438 TTAATGAAGG
231448 TAAAACCTTAAACCTTAAACCCC
1 TAAAACCTTAAACCTTAAA-CCC
*
231471 TAAAACCTTAAAACC-TAAATCC
1 TAAAACCTT-AAACCTTAAACCC
231493 TAAAA
1 TAAAA
231498 AGAGTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 7 0.28
23 13 0.52
24 5 0.20
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (22 bp):
TAAAACCTTAAACCTTAAACCC
Found at i:232327 original size:26 final size:26
Alignment explanation
Indices: 232293--232397 Score: 156
Period size: 26 Copynumber: 4.0 Consensus size: 26
232283 CCTTAAACCC
*
232293 TAAATACAAATATCAACATAATTAAT
1 TAAATACAAATATAAACATAATTAAT
* *
232319 TAAACACAAATGTAAACATAATTAAT
1 TAAATACAAATATAAACATAATTAAT
* * *
232345 TAAATACAAACATAAAAATTATTAAT
1 TAAATACAAATATAAACATAATTAAT
232371 TAAATACAAATATAAACATAATTAAT
1 TAAATACAAATATAAACATAATTAAT
232397 T
1 T
232398 CAAAATTCAT
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 68 1.00
ACGTcount: A:0.59, C:0.10, G:0.01, T:0.30
Consensus pattern (26 bp):
TAAATACAAATATAAACATAATTAAT
Found at i:232413 original size:28 final size:28
Alignment explanation
Indices: 232382--232459 Score: 138
Period size: 28 Copynumber: 2.8 Consensus size: 28
232372 AAATACAAAT
* *
232382 ATAAACATAATTAATTCAAAATTCATTC
1 ATAAACTTAATTAATTCCAAATTCATTC
232410 ATAAACTTAATTAATTCCAAATTCATTC
1 ATAAACTTAATTAATTCCAAATTCATTC
232438 ATAAACTTAATTAATTCCAAAT
1 ATAAACTTAATTAATTCCAAAT
232460 GAAAAATGTC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.37
Consensus pattern (28 bp):
ATAAACTTAATTAATTCCAAATTCATTC
Found at i:235351 original size:27 final size:27
Alignment explanation
Indices: 235332--235392 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
235322 CTACCTATAT
*
235332 GGCACCATTGGTGCCGCCTACCCAATA
1 GGCACCATTGATGCCGCCTACCCAATA
* *
235359 GGCACCATTGATTCCGCCTACCCCATA
1 GGCACCATTGATGCCGCCTACCCAATA
235386 GGCACCA
1 GGCACCA
235393 CTCGAAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.23, C:0.39, G:0.20, T:0.18
Consensus pattern (27 bp):
GGCACCATTGATGCCGCCTACCCAATA
Found at i:236759 original size:21 final size:21
Alignment explanation
Indices: 236709--236763 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
236699 GATAGTGTAG
*
236709 ACTTCTACCGATACAAGTCAC
1 ACTTCTACCGAAACAAGTCAC
* * *
236730 AGTTGTACCGAAACAAGTGAC
1 ACTTCTACCGAAACAAGTCAC
*
236751 TCTTCTACCGAAA
1 ACTTCTACCGAAA
236764 TAAGCCTTAC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.24
Consensus pattern (21 bp):
ACTTCTACCGAAACAAGTCAC
Found at i:237584 original size:52 final size:52
Alignment explanation
Indices: 237455--237748 Score: 331
Period size: 52 Copynumber: 5.6 Consensus size: 52
237445 TTGCATTTTT
* * * * * *
237455 TATACTCACGATGATATAGAGTCATTGGACCT-TTAATCCGTATTAGGAATT-A
1 TATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTA-AAGG-ATTCA
* *
237507 TATACACTCACGATGACACATAGTCATTGGACCTCATAATCCGTAAGGGATTCA
1 TAT--ACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCA
* *
237561 TATACTCACCATGACATATAGTCATCGGACCTCATAATCCGTAAAGGATTCA
1 TATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCA
* * *
237613 TATACTCATGATGACACATAGTCATCGGACCTTATAATCCATAAAGGATTCA
1 TATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCA
* * * * ** * *
237665 CACACTCACAATGAAACATAGTCATTAGACCTCATAACCCATAAAGGATTCA
1 TATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCA
* *
237717 TATACTCACGATAAGACATAGTCATCGGACCT
1 TATACTCACGATGACACATAGTCATCGGACCT
237749 TTTTCAGTTA
Statistics
Matches: 207, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
52 163 0.79
53 3 0.01
54 32 0.15
55 9 0.04
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (52 bp):
TATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCA
Found at i:243589 original size:71 final size:71
Alignment explanation
Indices: 243462--243596 Score: 175
Period size: 71 Copynumber: 1.9 Consensus size: 71
243452 TAGAAGTTTA
* ** *
243462 AGGCCACAACTTCTTTGCTCTCTAGAGTTTTTTCTACTGATATAACTCTTAGTTGTATCAGTAGA
1 AGGCCACAACTTCTTTGCTCTCTAGAGTTTGTTCTACCAATAGAACTCTTAGTTGTATCAGTAGA
243527 AGTCCC
66 AGTCCC
* * *
243533 AGGCCACAACTTCTTTGCTCTTTTA-AGTTTGTTCTACCAATAGAAGTCTT-GATTGTATCGGTA
1 AGGCCACAACTTCTTTGCTC-TCTAGAGTTTGTTCTACCAATAGAACTCTTAG-TTGTATCAGTA
243596 G
64 G
243597 TTTGTCCTGT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
70 1 0.02
71 51 0.93
72 3 0.05
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.39
Consensus pattern (71 bp):
AGGCCACAACTTCTTTGCTCTCTAGAGTTTGTTCTACCAATAGAACTCTTAGTTGTATCAGTAGA
AGTCCC
Found at i:252225 original size:71 final size:71
Alignment explanation
Indices: 252116--252247 Score: 176
Period size: 71 Copynumber: 1.9 Consensus size: 71
252106 GTTCCAGCCC
* * *
252116 ACAATTTCTTTGCTCTCTGGAGTTTGTTCTGCTAATAGAACTCTTAGTTGTATCAGTAGAAGTCC
1 ACAATTTCTTTGCTCTCTAGAGTTTGTTCTACCAATAGAACTCTTAGTTGTATCAGTAGAAGTCC
252181 CAGGCT
66 CAGGCT
* * * * *
252187 ACAACTTT-TTTGCTCTCTAGAGTTTTTTCTACCGATAGAAGTCTTGGTTGTATCGGTAGAA
1 ACAA-TTTCTTTGCTCTCTAGAGTTTGTTCTACCAATAGAACTCTTAGTTGTATCAGTAGAA
252248 CCAAGAGATG
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
71 49 0.94
72 3 0.06
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (71 bp):
ACAATTTCTTTGCTCTCTAGAGTTTGTTCTACCAATAGAACTCTTAGTTGTATCAGTAGAAGTCC
CAGGCT
Found at i:264038 original size:52 final size:50
Alignment explanation
Indices: 263959--264124 Score: 219
Period size: 52 Copynumber: 3.2 Consensus size: 50
263949 GGTTGTTACA
263959 CATCGGACCTCATAATCCGTAAGGGATTCATATACTAACATTGACACATAGT
1 CATCGGACCTCATAATCCGTAA-GGATTCATATACT-ACATTGACACATAGT
*
264011 CATCGGACCTCATAATCTGTGAAGGATTCATATACT-CATGATGACACATAGT
1 CATCGGACCTCATAATCCGT-AAGGATTCATATACTACAT--TGACACATAGT
*
264063 CACCGGACCTCATAATCCGTAAAGGATTCATATACTCACGA-TGACACATAGT
1 CATCGGACCTCATAATCCGT-AAGGATTCATATACT-AC-ATTGACACATAGT
*
264115 CATCGAACCT
1 CATCGGACCT
264125 TTTTCATTTA
Statistics
Matches: 102, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
50 3 0.03
52 95 0.93
53 2 0.02
54 1 0.01
55 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.26
Consensus pattern (50 bp):
CATCGGACCTCATAATCCGTAAGGATTCATATACTACATTGACACATAGT
Found at i:269112 original size:21 final size:21
Alignment explanation
Indices: 269069--269113 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
269059 AAATACTTTC
*
269069 AAAATAATATTTGTTGCTTTGT
1 AAAATAATATTTATT-CTTTGT
269091 AAAATAAATATTTATT-TTTGT
1 AAAAT-AATATTTATTCTTTGT
269112 AA
1 AA
269114 TTTAACAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 7 0.33
22 5 0.24
23 9 0.43
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49
Consensus pattern (21 bp):
AAAATAATATTTATTCTTTGT
Done.