Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001629.1 Kokia drynarioides strain JFW-HI SEQ_113267, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3512
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36


Found at i:740 original size:17 final size:18

Alignment explanation


    Indices: 713--746  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

        703 AACCAATAAA

                              
        713 CTATAATATATAACATAC
          1 CTATAATATATAACATAC

                        *    
        731 CTAT-ATATATAGCATA
          1 CTATAATATATAACATA

        747 TGGCCTACGA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17   11  0.73
  18    4  0.27

ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35


Consensus pattern (18 bp):   
CTATAATATATAACATAC
Done.