Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001631.1 Kokia drynarioides strain JFW-HI SEQ_113269, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2043
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35


Found at i:849 original size:29 final size:30

Alignment explanation


    Indices: 808--864  Score: 73
    Period size: 29  Copynumber: 1.9  Consensus size: 30

        798 CATAGTCTGG

                                          
        808 CACATGACTGTGTGAC-AGCCCGTGTGGCT
          1 CACATGACTGTGTGACTAGCCCGTGTGGCT

                           *    *        
        837 CACATGA-TCGTGTGTCTAGGCCGTGTGG
          1 CACATGACT-GTGTGACTAGCCCGTGTGG

        865 AACGGCTCAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  28    1  0.04
  29   13  0.54
  30   10  0.42

ACGTcount: A:0.16, C:0.25, G:0.33, T:0.26


Consensus pattern (30 bp):   
CACATGACTGTGTGACTAGCCCGTGTGGCT
Done.