Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001635.1 Kokia drynarioides strain JFW-HI SEQ_113276, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 728

Length: 1214
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36


Found at i:780 original size:24 final size:23

Alignment explanation


    Indices: 753--823  Score: 58
    Period size: 24  Copynumber: 3.0  Consensus size: 23

        743 CCCTTCATTA

                                     
        753 TCACCCTTT-TTCGAATCCTCACCT
          1 TCACCCTTTCTTC--ATCCTCACCT

                                     
        777 TCA-CCTTTACCTTCATCCTCACCT
          1 TCACCCTTT--CTTCATCCTCACCT

                        *           
        801 TCA-CCTTTACGCTCATCCTCACC
          1 TCACCCTTT-C-TTCATCCTCACC

        824 CCTCATTCTG


Statistics
Matches: 41,  Mismatches: 2, Indels: 8
        0.80            0.04        0.16

Matches are distributed among these distances:
  23    6  0.15
  24   32  0.78
  26    3  0.07

ACGTcount: A:0.17, C:0.45, G:0.03, T:0.35


Consensus pattern (23 bp):   
TCACCCTTTCTTCATCCTCACCT

Found at i:790 original size:12 final size:12

Alignment explanation


    Indices: 773--810  Score: 51
    Period size: 12  Copynumber: 3.2  Consensus size: 12

        763 TCGAATCCTC

                        
        773 ACCTTCACCTTT
          1 ACCTTCACCTTT

                        *
        785 ACCTTCATCC-TC
          1 ACCTTCA-CCTTT

                        
        797 ACCTTCACCTTT
          1 ACCTTCACCTTT

              
        809 AC
          1 AC

        811 GCTCATCCTC


Statistics
Matches: 22,  Mismatches: 2, Indels: 4
        0.79            0.07        0.14

Matches are distributed among these distances:
  11    2  0.09
  12   18  0.82
  13    2  0.09

ACGTcount: A:0.18, C:0.45, G:0.00, T:0.37


Consensus pattern (12 bp):   
ACCTTCACCTTT
Done.