Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001638.1 Kokia drynarioides strain JFW-HI SEQ_113280, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1766
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36


Found at i:925 original size:28 final size:27

Alignment explanation


    Indices: 865--925  Score: 77
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        855 CCAAGAATTC

                            *   *   *  
        865 TATTAAAAAGAGGATCGAAGGAAATAA
          1 TATTAAAAAGAGGATCAAAGAAAACAA

                         *             
        892 TATTAAAAAGAGGGTCAAAGAAAACAA
          1 TATTAAAAAGAGGATCAAAGAAAACAA

                   
        919 TCATTAA
          1 T-ATTAA

        926 TTGAAAATTG


Statistics
Matches: 29,  Mismatches: 4, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  27   24  0.83
  28    5  0.17

ACGTcount: A:0.56, C:0.07, G:0.18, T:0.20


Consensus pattern (27 bp):   
TATTAAAAAGAGGATCAAAGAAAACAA
Done.